Non-Coding RNA Search

Ss1.1-Thy1-THY010039C06.5

Sequence:


               
               TCCGGCACCATGTCTGGCTTGTCTGATCCACAAGCCCTGCGTGGCCCTTGCCCGCTAGCG
TTGCTGCTTTTATTCCTGCTCGGCCCCAGCTCCGTCCTCACGATCTCCTTCCATCTGCCC
GTTAATTCCCGCAAGTGCCTCCGCGAGGAGATCCACAAGGACCTGCTGGTGACGGGCGCG
TACGAGATCACCGACCAGTCTGGGGGCGCTGGCGGCCCGCGCACCCACCTCAAGATAACA
GATTCTGCTGGCCATATTCTGTACTCCAAGGAGGATGCAACCAAGGGGAAGTTTGCCTTT
ACCACTGAAGATTATGACATGTTTGAAGTGTGTTTTGAGAGCAAGGGAACAGGGCGGATA
CCTGACCAACTCGTGATCCTAGACATGAAGCATGGAGTGGAGGCAAAAAATTACGAAGAG
ATTGCAAAAGTTGAGAAGCTCAAACCTTTGGAGGTGGAGCTACGACGCCTAGAAGACCTT
TCAGAGTCTATTGTTAATGATTTTGCCTATATGAAGAAGCGAGAGGAAGAGATGCGTGAT
ACCAATGAATCCACAAACACTCGGGTCCTGTACTTCAGCATCTTTTCAATGTTCTGCCTC
ATTGGACTAGCCACCTGGCAGGTCTTCTACCTGCGTCGTTTCTTCAAAGCCAAGAAGTTG
ATTGAGTAATAAAGCCCAGTCTCCTCCCACTTGTATCTTAGCCAGCAGAACATCGCTGGG
ACGTGCCTGGCTTAAGGCATCCTACCAACAGCACCATCAAGGCACGTTGGAGCTTTCTTG
CCAGAACTGGTCTCTTTTGGTGTGGGAGGATGTGGGTGGATGTGGGTTACCACCTACACC
CAACATGTTAAAGATGGACTTTTTTTTAACTTGGTAGGATTTGGACTGGTTTTGCAACAG
TAGGACTATTACTAGAGTCACCTACAACAAAAAATAGGGGTTACCTAGATAATGCCAAAG
CCAGCATGTGTACTGGGTTTCCTCAAATGATCTGTGTAAACCATGTTTTCTTTCCTTCTC
CCACTTACTCACCAGCTTGGGCTTCCACTCTAGTTCCTTTACCAAGATTTGTGTGACCAT
GTTGAACTTGTTTCATTCTGATTGTCTCTTTGATTGTCTCTTTGGGTTTCTCTGTGGCAA
CCTTTAACTTTCTCTTGACCCTTAGCTGAAATGTTTAGGTAGCTTCTGATGATACCCTTT
CATCATTTTATGTCTCTTATAAAGGGCGATGGATGTGACACCTGATAGAAATGAGCTTTG
AACTGTAGATAACTCTTAAAGAAAATTACATTTTAGAGAATTAAAATATTTGTGCTCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGCACCATGTCTGGCTTGTCTGATCCACAAGCCCTGCGTGGCCCTTGCCCGCTAGCG
TTGCTGCTTTTATTCCTGCTCGGCCCCAGCTCCGTCCTCACGATCTCCTTCCATCTGCCC
GTTAATTCCCGCAAGTGCCTCCGCGAGGAGATCCACAAGGACCTGCTGGTGACGGGCGCG
TACGAGATCACCGACCAGTCTGGGGGCGCTGGCGGCCCGCGCACCCACCTCAAGATAACA
GATTCTGCTGGCCATATTCTGTACTCCAAGGAGGATGCAACCAAGGGGAAGTTTGCCTTT
ACCACTGAAGATTATGACATGTTTGAAGTGTGTTTTGAGAGCAAGGGAACAGGGCGGATA
CCTGACCAACTCGTGATCCTAGACATGAAGCATGGAGTGGAGGCAAAAAATTACGAAGAG
ATTGCAAAAGTTGAGAAGCTCAAACCTTTGGAGGTGGAGCTACGACGCCTAGAAGACCTT
TCAGAGTCTATTGTTAATGATTTTGCCTATATGAAGAAGCGAGAGGAAGAGATGCGTGAT
ACCAATGAATCCACAAACACTCGGGTCCTGTACTTCAGCATCTTTTCAATGTTCTGCCTC
ATTGGACTAGCCACCTGGCAGGTCTTCTACCTGCGTCGTTTCTTCAAAGCCAAGAAGTTG
ATTGAGTAATAAAGCCCAGTCTCCTCCCACTTGTATCTTAGCCAGCAGAACATCGCTGGG
ACGTGCCTGGCTTAAGGCATCCTACCAACAGCACCATCAAGGCACGTTGGAGCTTTCTTG
CCAGAACTGGTCTCTTTTGGTGTGGGAGGATGTGGGTGGATGTGGGTTACCACCTACACC
CAACATGTTAAAGATGGACTTTTTTTTAACTTGGTAGGATTTGGACTGGTTTTGCAACAG
TAGGACTATTACTAGAGTCACCTACAACAAAAAATAGGGGTTACCTAGATAATGCCAAAG
CCAGCATGTGTACTGGGTTTCCTCAAATGATCTGTGTAAACCATGTTTTCTTTCCTTCTC
CCACTTACTCACCAGCTTGGGCTTCCACTCTAGTTCCTTTACCAAGATTTGTGTGACCAT
GTTGAACTTGTTTCATTCTGATTGTCTCTTTGATTGTCTCTTTGGGTTTCTCTGTGGCAA
CCTTTAACTTTCTCTTGACCCTTAGCTGAAATGTTTAGGTAGCTTCTGATGATACCCTTT
CATCATTTTATGTCTCTTATAAAGGGCGATGGATGTGACACCTGATAGAAATGAGCTTTG
AACTGTAGATAACTCTTAAAGAAAATTACATTTTAGAGAATTAAAATATTTGTGCTCAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1360136|emb|CAA66072.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1360136|emb|CAA66072.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-90, - strand, RNAz p=0.923739
               

               
               667-775, + strand, RNAz p=0.512985

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.923739
               

               
               667-775, + strand, RNAz p=0.512985

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006827, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006827, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-234, gnl|bosTau2|chr10 (56795971-56795738)
               

               
               1-234, gnl|canFam2|chr8 (51295131-51295503)
               

               
               1-234, gnl|dasNov1|scaffold_282 (54227-54608)
               

               
               1-234, gnl|echTel1|scaffold_317142 (168487-168868)
               

               
               1-234, gnl|hg17|chr14 (74712740-74713121)
               

               
               1-234, gnl|Hg17|chr14 (74713044-74712811)
               

               
               1-234, gnl|mm7|chr12 (83373941-83374320)
               

               
               1-234, gnl|Mm7|chr12 (83374243-83374010)
               

               
               1-234, gnl|monDom2|scaffold_8 (59297893-59297513)
               

               
               1-234, gnl|oryCun1|scaffold_177482 (33301-32932)
               

               
               1-234, gnl|panTro1|chr15 (74741426-74741807)
               

               
               1-234, gnl|rheMac2|chr7 (138288781-138289162)
               

               
               1-234, gnl|rn3|chr6 (109363960-109363579)
               


               
               547-1318, gnl|bosTau2|chr10 (56737547-56736799)
               

               
               547-1318, gnl|Hg17|chr14 (74671463-74670710)
               

               
               547-1318, gnl|Mm7|chr12 (83343117-83342409)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr10 (56795971-56795738)
               

               
               1-234, gnl|canFam2|chr8 (51295131-51295503)
               

               
               1-234, gnl|dasNov1|scaffold_282 (54227-54608)
               

               
               1-234, gnl|echTel1|scaffold_317142 (168487-168868)
               

               
               1-234, gnl|hg17|chr14 (74712740-74713121)
               

               
               1-234, gnl|Hg17|chr14 (74713044-74712811)
               

               
               1-234, gnl|mm7|chr12 (83373941-83374320)
               

               
               1-234, gnl|Mm7|chr12 (83374243-83374010)
               

               
               1-234, gnl|monDom2|scaffold_8 (59297893-59297513)
               

               
               1-234, gnl|oryCun1|scaffold_177482 (33301-32932)
               

               
               1-234, gnl|panTro1|chr15 (74741426-74741807)
               

               
               1-234, gnl|rheMac2|chr7 (138288781-138289162)
               

               
               1-234, gnl|rn3|chr6 (109363960-109363579)
               


               
               547-1318, gnl|bosTau2|chr10 (56737547-56736799)
               

               
               547-1318, gnl|Hg17|chr14 (74671463-74670710)
               

               
               547-1318, gnl|Mm7|chr12 (83343117-83342409)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               mas (0.42061)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	1-90, - strand, RNAz p=0.923739
	667-775, + strand, RNAz p=0.512985

	1-234, gnl\|bosTau2\|chr10 (56795971-56795738)
	1-234, gnl\|canFam2\|chr8 (51295131-51295503)
	1-234, gnl\|dasNov1\|scaffold_282 (54227-54608)
	1-234, gnl\|echTel1\|scaffold_317142 (168487-168868)
	1-234, gnl\|hg17\|chr14 (74712740-74713121)
	1-234, gnl\|Hg17\|chr14 (74713044-74712811)
	1-234, gnl\|mm7\|chr12 (83373941-83374320)
	1-234, gnl\|Mm7\|chr12 (83374243-83374010)
	1-234, gnl\|monDom2\|scaffold_8 (59297893-59297513)
	1-234, gnl\|oryCun1\|scaffold_177482 (33301-32932)
	1-234, gnl\|panTro1\|chr15 (74741426-74741807)
	1-234, gnl\|rheMac2\|chr7 (138288781-138289162)
	1-234, gnl\|rn3\|chr6 (109363960-109363579)

	547-1318, gnl\|bosTau2\|chr10 (56737547-56736799)
	547-1318, gnl\|Hg17\|chr14 (74671463-74670710)
	547-1318, gnl\|Mm7\|chr12 (83343117-83342409)

	mas (0.42061)
	ute (0.265569)
	eep (0.245128)
	cly (0.241284)
	eru (0.240096)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	duo (0.172801)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	lun (0.150489)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	med (0.116252)
	cbl (0.114797)