Ss1.1-Thy1-THY010039D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTGGTGGCGGCCGCTGGCCAGTGTAAGATGGCGGCGGCGTTGGTGGCGGCAGTGGAC GGGGCGGCTGGGCCTGGAACAGTCGGAGCAGCCGCTGGCAGAAGGATGACCCAAGACGGG AAGCGGGCTGCAGAGTCTCGCCGGCTCCCGTGCTTGTAACTGCCCCAGCCGGACACCCCC CCCCCTTTGACCTACCCGTCCTTCAGTGAATCTACAGGCCTATTTTCTCAGGAGCTCAGC CTGGCCCTACTTCAGTGATAAAGGAGGAAAGTTTAAAACAATACTGGTGTTTCAAAAGCA AACGGACTAGTAGAAGACATTCTATTCAGTGAATCTACAGGCCTATTTTCTCAGGAGCTC AGCCTGGCCCTACTTCAGTGATAAAGGAGGAAAGGCTGGCTACAGTAAACATCATTCAAG ATGTCCAGCAAAGGGAGCAGCACAGATGGCAAAACAGACTTAGCTAATGGAAGCCTGTCT AGCAGTCCAGAGGAGATGTCTGGTGCTGAGGAAGGGAGAGAGACATCCTCAGGCATTGAA GTGGAGGCCTCAGACCTGAGCTTGAGCTTGACTGGGGATGATGGTGGCCCCAATCGCACC AGCACAGAAAGTCGAGGCACGGATACAGAGAGCTCAGGTGAAGACAAGGACTCTGACAGC ATGGAGGACACTGGCCATTACTCCATCAATGATGAAAACCAAGTCCATGACCCCTCAGAG GAAGAGGAGGAGGAAGAAGAGGAGGAAGAAGAGCATCCTCGTCGCCGTGTACAGCGCAAG CGGGCCAATCGTGATCAGGACTCATCCGACGATGAGCGAGCCCTGGAGGACTGGGTAGCC TCAGAGACATCAGCCCTGCCCCGACCTCGCTGGCAAGCCCTTCCTGCTCTTCGGGAGCGG GAGCTGGGTTCAAGTGCCCGTTTTGTGTATGAGGCTTGTGGGGCAAGAGTCTTTGTGCAG CGTTTCCGTCTGCAGCATGGGCTTGAGGGCCATACTGGTTGTGTTAATACCCTGCACTTT AACCAGCGCGGCACCTGGCTGGCCAGTGGCAGCGATGACCTGAAAGTGGTGGTTTGGGAC TGGGTGCGGCGACAGCCAGTATTGGACTTTGAGAGTGGCCACAAAAGCAATGTCTTCCAG GCCAAGTTCCTTCCTAACAGTGGTGATTCTACCCTGGCCATGTGTGCCCGTGATGGGCAG GTTCGGGTAGCAGAGTTGTCTGCTACACAGTGCTGCAAGAATACGAAGCGTGTGGCACAG CACAAGGGAGCATCCCACAAATTGGCCCTGGAACCAGACTCTCCCTGTACGTTCCTGTCT GCAGGTGAAGATGCAGTTGTCTTTACCATTGACCTTAGACAAGACCGGCCAGCTTCGAAA TTGGTGGTGACAAAAGAAAAGGAGAAGAAAGTGGGGCTGTATACAATCTATGTGAATCCC GCCAATACACATCAGTTTGCAGTGGGTGGACGAGATCAGTTTGTAAGGATTTATGACCAG AGGAAAATTGATGAGAATGAAAACAATGGAGTACTCAAGAAATTCTGTCCTCATCACCTG GTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAG CTCCTGGCCAGTTACAACGATGAAGACATTTACCTCTTCAACTCCTCTCACAGTGATGGG GCCCAGTATATTAAAAGATACAAGGGCCACAGAAATAACGCCACAGTAAAAGGCGTCAAT TTCTATGGCCCCAAGAGTGAGTTTGTGGTGAGCGGTAGTGACTGCGGGCACATCTTCCTC TGGGAGAAATCATCCTGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTA AATTGTCTTGAGCCCCATCCTCACCTGCCTGTGCTGGCAACCAGTGGCCTAGACCATGAT GTCAAGATCTGGGCACCCACAGCCGAAACTTCCACTGAGCTTACAGGGTTAAAGGATGTG ATTAAGAAGAACAAGCGGGAACGGGATGAAGATAGCTTACACCACACTGACTTATTTGAT AGCCACATGCTCTGGTTCCTCATGCATCACCTGAGACAGAGACGCCATCACCGGCGCTGG CGAGAACCTGGGGTTGGGGCCACAGACGCAGATTCGGATGAGTCTCCCAGCTCCTCAGAC ACATCGGACGAGGAGGAGGGCCCCGACCGGGTGCAGTGTATGCCATCCTGAGGCCTCGTA CCCAGGAGGGGCAGGCCAGGGCTGCCAACCTGATCCTGCCTGGGCAGCCCTTTCCTGTCC CAGGCCCTTACATTCAGCAGAAACGCACTTTGGACATTTTTGCTTTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTGGTGGCGGCCGCTGGCCAGTGTAAGATGGCGGCGGCGTTGGTGGCGGCAGTGGAC GGGGCGGCTGGGCCTGGAACAGTCGGAGCAGCCGCTGGCAGAAGGATGACCCAAGACGGG AAGCGGGCTGCAGAGTCTCGCCGGCTCCCGTGCTTGTAACTGCCCCAGCCGGACACCCCC CCCCCTTTGACCTACCCGTCCTTCAGTGAATCTACAGGCCTATTTTCTCAGGAGCTCAGC CTGGCCCTACTTCAGTGATAAAGGAGGAAAGTTTAAAACAATACTGGTGTTTCAAAAGCA AACGGACTAGTAGAAGACATTCTATTCAGTGAATCTACAGGCCTATTTTCTCAGGAGCTC AGCCTGGCCCTACTTCAGTGATAAAGGAGGAAAGGCTGGCTACAGTAAACATCATTCAAG ATGTCCAGCAAAGGGAGCAGCACAGATGGCAAAACAGACTTAGCTAATGGAAGCCTGTCT AGCAGTCCAGAGGAGATGTCTGGTGCTGAGGAAGGGAGAGAGACATCCTCAGGCATTGAA GTGGAGGCCTCAGACCTGAGCTTGAGCTTGACTGGGGATGATGGTGGCCCCAATCGCACC AGCACAGAAAGTCGAGGCACGGATACAGAGAGCTCAGGTGAAGACAAGGACTCTGACAGC ATGGAGGACACTGGCCATTACTCCATCAATGATGAAAACCAAGTCCATGACCCCTCAGAG GAAGAGGAGGAGGAAGAAGAGGAGGAAGAAGAGCATCCTCGTCGCCGTGTACAGCGCAAG CGGGCCAATCGTGATCAGGACTCATCCGACGATGAGCGAGCCCTGGAGGACTGGGTAGCC TCAGAGACATCAGCCCTGCCCCGACCTCGCTGGCAAGCCCTTCCTGCTCTTCGGGAGCGG GAGCTGGGTTCAAGTGCCCGTTTTGTGTATGAGGCTTGTGGGGCAAGAGTCTTTGTGCAG CGTTTCCGTCTGCAGCATGGGCTTGAGGGCCATACTGGTTGTGTTAATACCCTGCACTTT AACCAGCGCGGCACCTGGCTGGCCAGTGGCAGCGATGACCTGAAAGTGGTGGTTTGGGAC TGGGTGCGGCGACAGCCAGTATTGGACTTTGAGAGTGGCCACAAAAGCAATGTCTTCCAG GCCAAGTTCCTTCCTAACAGTGGTGATTCTACCCTGGCCATGTGTGCCCGTGATGGGCAG GTTCGGGTAGCAGAGTTGTCTGCTACACAGTGCTGCAAGAATACGAAGCGTGTGGCACAG CACAAGGGAGCATCCCACAAATTGGCCCTGGAACCAGACTCTCCCTGTACGTTCCTGTCT GCAGGTGAAGATGCAGTTGTCTTTACCATTGACCTTAGACAAGACCGGCCAGCTTCGAAA TTGGTGGTGACAAAAGAAAAGGAGAAGAAAGTGGGGCTGTATACAATCTATGTGAATCCC GCCAATACACATCAGTTTGCAGTGGGTGGACGAGATCAGTTTGTAAGGATTTATGACCAG AGGAAAATTGATGAGAATGAAAACAATGGAGTACTCAAGAAATTCTGTCCTCATCACCTG GTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAG CTCCTGGCCAGTTACAACGATGAAGACATTTACCTCTTCAACTCCTCTCACAGTGATGGG GCCCAGTATATTAAAAGATACAAGGGCCACAGAAATAACGCCACAGTAAAAGGCGTCAAT TTCTATGGCCCCAAGAGTGAGTTTGTGGTGAGCGGTAGTGACTGCGGGCACATCTTCCTC TGGGAGAAATCATCCTGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTA AATTGTCTTGAGCCCCATCCTCACCTGCCTGTGCTGGCAACCAGTGGCCTAGACCATGAT GTCAAGATCTGGGCACCCACAGCCGAAACTTCCACTGAGCTTACAGGGTTAAAGGATGTG ATTAAGAAGAACAAGCGGGAACGGGATGAAGATAGCTTACACCACACTGACTTATTTGAT AGCCACATGCTCTGGTTCCTCATGCATCACCTGAGACAGAGACGCCATCACCGGCGCTGG CGAGAACCTGGGGTTGGGGCCACAGACGCAGATTCGGATGAGTCTCCCAGCTCCTCAGAC ACATCGGACGAGGAGGAGGGCCCCGACCGGGTGCAGTGTATGCCATCCTGAGGCCTCGTA CCCAGGAGGGGCAGGCCAGGGCTGCCAACCTGATCCTGCCTGGGCAGCCCTTTCCTGTCC CAGGCCCTTACATTCAGCAGAAACGCACTTTGGACATTTTTGCTTTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 469-2328, - strand, RNAz p=0.980841 | |
| 825-1104, + strand, RNAz p=0.96971 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-2328, - strand, RNAz p=0.980841 | |
| 825-1104, + strand, RNAz p=0.96971 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-198, gnl|bosTau2|chr3 (4784315-4784515) | |
| 1-198, gnl|Hg17|chr1 (157045336-157045139) | |
| 1-198, gnl|Mm7|chr1 (172118317-172118511) | |
| 469-1141, gnl|bosTau2|chr3 (4800360-4801017) | |
| 469-1141, gnl|Hg17|chr1 (157023234-157022559) | |
| 469-1141, gnl|Mm7|chr1 (172142501-172143155) | |
| 1377-1488, gnl|bosTau2|chr3 (4808145-4808256) | |
| 1377-1488, gnl|canFam2|chr38 (24984586-24984429) | |
| 1377-1488, gnl|danRer3|chr2 (34371411-34371546) | |
| 1377-1488, gnl|dasNov1|scaffold_119611 (1138-1295) | |
| 1377-1488, gnl|echTel1|scaffold_286136 (31145-30990) | |
| 1377-1488, gnl|hg17|chr1 (157014159-157014317) | |
| 1377-1488, gnl|Hg17|chr1 (157014270-157014159) | |
| 1377-1488, gnl|loxAfr1|scaffold_55017 (3508-3666) | |
| 1377-1488, gnl|mm7|chr1 (172150193-172150032) | |
| 1377-1488, gnl|Mm7|chr1 (172150080-172150191) | |
| 1377-1488, gnl|monDom2|scaffold_13 (61290050-61289892) | |
| 1377-1488, gnl|oryCun1|scaffold_153097 (3580-3738) | |
| 1377-1488, gnl|panTro1|chr1 (139092325-139092483) | |
| 1377-1488, gnl|rheMac2|chr1 (138854135-138854293) | |
| 1377-1488, gnl|rn3|chr13 (88231489-88231339) | |
| 1377-1488, gnl|tetNig1|chr15_random (2254032-2253918) | |
| 1377-1488, gnl|xenTro1|scaffold_96 (1187910-1187784) | |
| 1723-1859, gnl|bosTau2|chr3 (4817918-4818054) | |
| 1723-1859, gnl|canFam2|chr38 (24994221-24994085) | |
| 1723-1859, gnl|danRer3|chr2 (34370183-34370315) | |
| 1723-1859, gnl|dasNov1|scaffold_499 (44329-44465) | |
| 1723-1859, gnl|echTel1|scaffold_319549 (64846-64982) | |
| 1723-1859, gnl|hg17|chr1 (157005509-157005645) | |
| 1723-1859, gnl|Hg17|chr1 (157005648-157005512) | |
| 1723-1859, gnl|loxAfr1|scaffold_12910 (3661-3534) | |
| 1723-1859, gnl|mm7|chr1 (172159249-172159113) | |
| 1723-1859, gnl|Mm7|chr1 (172159108-172159244) | |
| 1723-1859, gnl|monDom2|scaffold_13 (61300791-61300655) | |
| 1723-1859, gnl|oryCun1|scaffold_198225 (49382-49510) | |
| 1723-1859, gnl|panTro1|chr1 (139083669-139083805) | |
| 1723-1859, gnl|rheMac2|chr1 (138844796-138844932) | |
| 1723-1859, gnl|rn3|chr13 (88369436-88369300) | |
| 1723-1859, gnl|tetNig1|chr15_random (2254705-2254569) | |
| 2094-2328, gnl|bosTau2|chr3 (4822832-4823066) | |
| 2094-2328, gnl|Hg17|chr1 (157000572-157000340) | |
| 2094-2328, gnl|Mm7|chr1 (172164728-172164959) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-198, gnl|bosTau2|chr3 (4784315-4784515) | |
| 1-198, gnl|Hg17|chr1 (157045336-157045139) | |
| 1-198, gnl|Mm7|chr1 (172118317-172118511) | |
| 469-1141, gnl|bosTau2|chr3 (4800360-4801017) | |
| 469-1141, gnl|Hg17|chr1 (157023234-157022559) | |
| 469-1141, gnl|Mm7|chr1 (172142501-172143155) | |
| 1377-1488, gnl|bosTau2|chr3 (4808145-4808256) | |
| 1377-1488, gnl|canFam2|chr38 (24984586-24984429) | |
| 1377-1488, gnl|danRer3|chr2 (34371411-34371546) | |
| 1377-1488, gnl|dasNov1|scaffold_119611 (1138-1295) | |
| 1377-1488, gnl|echTel1|scaffold_286136 (31145-30990) | |
| 1377-1488, gnl|hg17|chr1 (157014159-157014317) | |
| 1377-1488, gnl|Hg17|chr1 (157014270-157014159) | |
| 1377-1488, gnl|loxAfr1|scaffold_55017 (3508-3666) | |
| 1377-1488, gnl|mm7|chr1 (172150193-172150032) | |
| 1377-1488, gnl|Mm7|chr1 (172150080-172150191) | |
| 1377-1488, gnl|monDom2|scaffold_13 (61290050-61289892) | |
| 1377-1488, gnl|oryCun1|scaffold_153097 (3580-3738) | |
| 1377-1488, gnl|panTro1|chr1 (139092325-139092483) | |
| 1377-1488, gnl|rheMac2|chr1 (138854135-138854293) | |
| 1377-1488, gnl|rn3|chr13 (88231489-88231339) | |
| 1377-1488, gnl|tetNig1|chr15_random (2254032-2253918) | |
| 1377-1488, gnl|xenTro1|scaffold_96 (1187910-1187784) | |
| 1723-1859, gnl|bosTau2|chr3 (4817918-4818054) | |
| 1723-1859, gnl|canFam2|chr38 (24994221-24994085) | |
| 1723-1859, gnl|danRer3|chr2 (34370183-34370315) | |
| 1723-1859, gnl|dasNov1|scaffold_499 (44329-44465) | |
| 1723-1859, gnl|echTel1|scaffold_319549 (64846-64982) | |
| 1723-1859, gnl|hg17|chr1 (157005509-157005645) | |
| 1723-1859, gnl|Hg17|chr1 (157005648-157005512) | |
| 1723-1859, gnl|loxAfr1|scaffold_12910 (3661-3534) | |
| 1723-1859, gnl|mm7|chr1 (172159249-172159113) | |
| 1723-1859, gnl|Mm7|chr1 (172159108-172159244) | |
| 1723-1859, gnl|monDom2|scaffold_13 (61300791-61300655) | |
| 1723-1859, gnl|oryCun1|scaffold_198225 (49382-49510) | |
| 1723-1859, gnl|panTro1|chr1 (139083669-139083805) | |
| 1723-1859, gnl|rheMac2|chr1 (138844796-138844932) | |
| 1723-1859, gnl|rn3|chr13 (88369436-88369300) | |
| 1723-1859, gnl|tetNig1|chr15_random (2254705-2254569) | |
| 2094-2328, gnl|bosTau2|chr3 (4822832-4823066) | |
| 2094-2328, gnl|Hg17|chr1 (157000572-157000340) | |
| 2094-2328, gnl|Mm7|chr1 (172164728-172164959) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eep (0.245128) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cov (0.132153) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eep (0.245128) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ute (0.132784) | |
| cov (0.132153) | |
| jca (0.11396) |