Ss1.1-Thy1-THY010039D08.5
|
AAATACCGGAGGAAAGGTTCAGGTCCGGACATTCAGAACGACCGCTCTGCTCCTCGTCTC
TTTGGTTCCGGAGGTCGCTGTGGCCGTGGGAAATGCTGGCGCGCGCGGCGCGGGGGACTG
GAGCCCTTTTGCTGAGGGGCTCCGTACAGGCTTCTGGCCGTGCTCCGCGCCGCTCCTCCT
CTGGATTGCCCCGAAACACCGTGGTACTATTTGTGCCCCAGCAGGAGGCCTGGGTGGTGG
AGCGAATGGGCCGATTCCACCGGATCCTGGAGCCTGGCTTGAACATCCTCATCCCTGTGT
TAGACCGGATCCGCTATGTCCAGAGTCTCAAGGAAATTGTCATCAACGTGCCTGAGCAGT
CAGCTGTGACTCTTGACAATGTAACTCTGCAAATTGATGGAGTCCTTTACCTGCGCATCA
TGGACCCTTACAAGGCCAGCTATGGTGTGGAGGACCCTGAGTATGCTGTCACCCAACTAG
CTCAGACAACCATGAGATCAGAGCTCGGCAAACTCTCTCTGGACAAAGTCTTCCGGGAGC
GGGAGTCCCTGAATGCTAGCATCGTAGATGCCATCAACCAGGCTGCTGACTGCTGGGGCA
TCCGCTGCCTCCGTTATGAGATCAAGGATATCCATGTGCCACCCCGGGTGAAAGAGTCCA
TGCAGATGCAGGTGGAGGCAGAGCGGCGGAAACGGGCCACGGTGCTGGAGTCTGAGGGTA
CTCGAGAGTCGGCCATCAACGTGGCAGAGGGGAAGAAGCAGGCACAGATCCTGGCCTCCG
AGGCAGAAAAGGCTGAACAAATAAATCAGGCAGCAGGAGAGGCCAGTGCAGTTCTGGCCA
AGGCCAAGGCTAAAGCTGAAGCTATTCGCATTCTGGCTGCAGCTCTGACACAACATAATG
GAGATGCAGCAGCCTCACTGACTGTGGCCGAGCAGTATGTCAGCGCGTTCTCTAAACTGG
CCAAAGACTCCAACACTATCCTGCTGCCCTCCAACCCTGGCGATGTCACCAGTATGGTGG
CTCAGGCCATGGGTGTGTATGGGGCCCTCACCAAAGCCCCAGTGCCAGGGCCTCAGGACT
CAGTCTCCAGCAGGAGCAGCAGAGATGTCCAGGGCACAGATGCAAGTCTTGATGAGGAAC
TCGATCGAGTCAAGCTGAGTTAATGGAGTTGGGCTTAGTCAGGGAGGCGGGGGATAGGGA
AGCAGCATTCCCAGACTCTGGCTATAGCCTCCCTGCCAAGATTTTGGTTATTATTTTTTT
ATTTGAACTTTAATCATGTAATAAACTGGCCAATGGCAAAACAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAATACCGGAGGAAAGGTTCAGGTCCGGACATTCAGAACGACCGCTCTGCTCCTCGTCTC
TTTGGTTCCGGAGGTCGCTGTGGCCGTGGGAAATGCTGGCGCGCGCGGCGCGGGGGACTG
GAGCCCTTTTGCTGAGGGGCTCCGTACAGGCTTCTGGCCGTGCTCCGCGCCGCTCCTCCT
CTGGATTGCCCCGAAACACCGTGGTACTATTTGTGCCCCAGCAGGAGGCCTGGGTGGTGG
AGCGAATGGGCCGATTCCACCGGATCCTGGAGCCTGGCTTGAACATCCTCATCCCTGTGT
TAGACCGGATCCGCTATGTCCAGAGTCTCAAGGAAATTGTCATCAACGTGCCTGAGCAGT
CAGCTGTGACTCTTGACAATGTAACTCTGCAAATTGATGGAGTCCTTTACCTGCGCATCA
TGGACCCTTACAAGGCCAGCTATGGTGTGGAGGACCCTGAGTATGCTGTCACCCAACTAG
CTCAGACAACCATGAGATCAGAGCTCGGCAAACTCTCTCTGGACAAAGTCTTCCGGGAGC
GGGAGTCCCTGAATGCTAGCATCGTAGATGCCATCAACCAGGCTGCTGACTGCTGGGGCA
TCCGCTGCCTCCGTTATGAGATCAAGGATATCCATGTGCCACCCCGGGTGAAAGAGTCCA
TGCAGATGCAGGTGGAGGCAGAGCGGCGGAAACGGGCCACGGTGCTGGAGTCTGAGGGTA
CTCGAGAGTCGGCCATCAACGTGGCAGAGGGGAAGAAGCAGGCACAGATCCTGGCCTCCG
AGGCAGAAAAGGCTGAACAAATAAATCAGGCAGCAGGAGAGGCCAGTGCAGTTCTGGCCA
AGGCCAAGGCTAAAGCTGAAGCTATTCGCATTCTGGCTGCAGCTCTGACACAACATAATG
GAGATGCAGCAGCCTCACTGACTGTGGCCGAGCAGTATGTCAGCGCGTTCTCTAAACTGG
CCAAAGACTCCAACACTATCCTGCTGCCCTCCAACCCTGGCGATGTCACCAGTATGGTGG
CTCAGGCCATGGGTGTGTATGGGGCCCTCACCAAAGCCCCAGTGCCAGGGCCTCAGGACT
CAGTCTCCAGCAGGAGCAGCAGAGATGTCCAGGGCACAGATGCAAGTCTTGATGAGGAAC
TCGATCGAGTCAAGCTGAGTTAATGGAGTTGGGCTTAGTCAGGGAGGCGGGGGATAGGGA
AGCAGCATTCCCAGACTCTGGCTATAGCCTCCCTGCCAAGATTTTGGTTATTATTTTTTT
ATTTGAACTTTAATCATGTAATAAACTGGCCAATGGCAAAACAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
137-295, gnl|bosTau2|chr8 (27889780-27889623) |
|
137-295, gnl|Hg17|chr9 (35092821-35092663) |
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137-295, gnl|Mm7|chr4 (43044923-43044766) |
| |
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528-677, gnl|bosTau2|chr8 (27888579-27888430) |
|
528-677, gnl|canFam2|chr11 (54706826-54707027) |
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528-677, gnl|danRer3|chr10 (10383345-10383159) |
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528-677, gnl|dasNov1|scaffold_24748 (4380-4178) |
|
528-677, gnl|echTel1|scaffold_307714 (2165-2363) |
|
528-677, gnl|fr1|chrUn (226676587-226676754) |
|
528-677, gnl|hg17|chr9 (35091371-35091569) |
|
528-677, gnl|Hg17|chr9 (35091565-35091417) |
|
528-677, gnl|mm7|chr4 (43043550-43043730) |
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528-677, gnl|Mm7|chr4 (43043727-43043578) |
|
528-677, gnl|monDom2|scaffold_17 (46817935-46817734) |
|
528-677, gnl|oryCun1|scaffold_210675 (44065-43866) |
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528-677, gnl|panTro1|chr11 (35647037-35647235) |
|
528-677, gnl|rheMac2|chr15 (42450655-42450455) |
|
528-677, gnl|rn3|chr5 (59520574-59520754) |
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528-677, gnl|tetNig1|chrUn_random (53516288-53516122) |
|
528-677, gnl|xenTro1|scaffold_713 (497723-497576) |
| |
|
1021-1300, gnl|bosTau2|chr8 (27887186-27886907) |
|
1021-1300, gnl|Hg17|chr9 (35090174-35089895) |
|
1021-1300, gnl|Mm7|chr4 (43042112-43041840) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
137-295, gnl|bosTau2|chr8 (27889780-27889623) |
|
137-295, gnl|Hg17|chr9 (35092821-35092663) |
|
137-295, gnl|Mm7|chr4 (43044923-43044766) |
| |
|
528-677, gnl|bosTau2|chr8 (27888579-27888430) |
|
528-677, gnl|canFam2|chr11 (54706826-54707027) |
|
528-677, gnl|danRer3|chr10 (10383345-10383159) |
|
528-677, gnl|dasNov1|scaffold_24748 (4380-4178) |
|
528-677, gnl|echTel1|scaffold_307714 (2165-2363) |
|
528-677, gnl|fr1|chrUn (226676587-226676754) |
|
528-677, gnl|hg17|chr9 (35091371-35091569) |
|
528-677, gnl|Hg17|chr9 (35091565-35091417) |
|
528-677, gnl|mm7|chr4 (43043550-43043730) |
|
528-677, gnl|Mm7|chr4 (43043727-43043578) |
|
528-677, gnl|monDom2|scaffold_17 (46817935-46817734) |
|
528-677, gnl|oryCun1|scaffold_210675 (44065-43866) |
|
528-677, gnl|panTro1|chr11 (35647037-35647235) |
|
528-677, gnl|rheMac2|chr15 (42450655-42450455) |
|
528-677, gnl|rn3|chr5 (59520574-59520754) |
|
528-677, gnl|tetNig1|chrUn_random (53516288-53516122) |
|
528-677, gnl|xenTro1|scaffold_713 (497723-497576) |
| |
|
1021-1300, gnl|bosTau2|chr8 (27887186-27886907) |
|
1021-1300, gnl|Hg17|chr9 (35090174-35089895) |
|
1021-1300, gnl|Mm7|chr4 (43042112-43041840) |
|
csp (0.483559) |
|
lnt (0.426925) |
|
nmm (0.398406) |
|
med (0.348756) |
|
nje (0.33184) |
|
cag (0.302389) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
nms (0.213858) |
|
ldo (0.194005) |
|
sto (0.179824) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
pty (0.142714) |
|
che (0.136314) |
|
ste (0.135208) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
csp (0.483559) |
|
lnt (0.426925) |
|
nmm (0.398406) |
|
med (0.348756) |
|
nje (0.33184) |
|
cag (0.302389) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
nms (0.213858) |
|
ldo (0.194005) |
|
sto (0.179824) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
pty (0.142714) |
|
che (0.136314) |
|
ste (0.135208) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
