Ss1.1-Thy1-THY010039F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTCGGCGGCAGCGGCGGCGGCGGTAAGATGGCTGCCCACGGGGGCTCCGCGGCGTCGT CGGCGCTGAAGGGGTTAATTCAGCAGTTTACCGCCATCACCGGTGCAAGTGAAAGTGTAG GGAAACATATGCTTGAAGCCTGCAACAATAATCTGGAGATGGCAGTCACTATGTTTTTGG ATGGTGGAGGAATCGCTGAAGAGCCCAGTACCAGTTCAGCAAGTGTTTCCACTGTCAGAC CACACACAGAAGAGGAAGTCCGTGCTCCAATTCCTCAAAAGCAGGAAATATTGGTGGAAC CAGAACCTTTGTTTGGTGCTCCTAAAAGACGGCGACCTGCACGTTCAATATTTGATGGTT TCCGGGATTTTCAAACTGAAACTATTCGGCAAGAACAGGAATTAAGAAATGGAGGAGCAA TAGATAAGAAACTAACTACCCTTGCAGATCTGTTCCGGCCACCCATTGATTTGATGCATA AAGGCAGCTTTGAAACAGCCAAAGAGTGTGGCCAGATGCAGAATAAGTGGCTGATGATAA ACATTCAAAATGTGCAAGACTTTGCATGCCAGTGCCTCAACCGCGACGTATGGAGCAATG AAGCTGTGAAGAATATTATCCGGGAACATTTCATTTTCTGGCAGGTTTATCATGACAGTG AAGAGGGTCAGAGATACATACAGTTTTATAAGCTAGGGGATTTCCCCTATGTTTCCATCT TGGATCCACGGACAGGTCAGAAGCTAGTAGAGTGGCACCAGTTAGATGTATCTTCTTTCT TGGACCAAGTAACGGGATTTCTGGGTGAACACGGGCAGCTGGATGGACTTTCTAGCAGTC CCCCCAAAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTCGGCGGCAGCGGCGGCGGCGGTAAGATGGCTGCCCACGGGGGCTCCGCGGCGTCGT CGGCGCTGAAGGGGTTAATTCAGCAGTTTACCGCCATCACCGGTGCAAGTGAAAGTGTAG GGAAACATATGCTTGAAGCCTGCAACAATAATCTGGAGATGGCAGTCACTATGTTTTTGG ATGGTGGAGGAATCGCTGAAGAGCCCAGTACCAGTTCAGCAAGTGTTTCCACTGTCAGAC CACACACAGAAGAGGAAGTCCGTGCTCCAATTCCTCAAAAGCAGGAAATATTGGTGGAAC CAGAACCTTTGTTTGGTGCTCCTAAAAGACGGCGACCTGCACGTTCAATATTTGATGGTT TCCGGGATTTTCAAACTGAAACTATTCGGCAAGAACAGGAATTAAGAAATGGAGGAGCAA TAGATAAGAAACTAACTACCCTTGCAGATCTGTTCCGGCCACCCATTGATTTGATGCATA AAGGCAGCTTTGAAACAGCCAAAGAGTGTGGCCAGATGCAGAATAAGTGGCTGATGATAA ACATTCAAAATGTGCAAGACTTTGCATGCCAGTGCCTCAACCGCGACGTATGGAGCAATG AAGCTGTGAAGAATATTATCCGGGAACATTTCATTTTCTGGCAGGTTTATCATGACAGTG AAGAGGGTCAGAGATACATACAGTTTTATAAGCTAGGGGATTTCCCCTATGTTTCCATCT TGGATCCACGGACAGGTCAGAAGCTAGTAGAGTGGCACCAGTTAGATGTATCTTCTTTCT TGGACCAAGTAACGGGATTTCTGGGTGAACACGGGCAGCTGGATGGACTTTCTAGCAGTC CCCCCAAAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-104, gnl|bosTau2|chr1 (42366378-42366275) | |
| 1-104, gnl|canFam2|chr33 (32550625-32550793) | |
| 1-104, gnl|echTel1|scaffold_286000 (49966-49799) | |
| 1-104, gnl|hg17|chr3 (197647443-197647608) | |
| 1-104, gnl|Hg17|chr3 (197647606-197647506) | |
| 1-104, gnl|mm7|chr16 (32006952-32006784) | |
| 1-104, gnl|Mm7|chr16 (32006784-32006887) | |
| 1-104, gnl|monDom2|scaffold_24 (26164836-26165004) | |
| 1-104, gnl|oryCun1|scaffold_214084 (5650-5839) | |
| 1-104, gnl|panTro1|chr2 (201821172-201821337) | |
| 1-104, gnl|rn3|chr11 (70335551-70335722) | |
| 498-646, gnl|bosTau2|chr1 (42347253-42347105) | |
| 498-646, gnl|canFam2|chr33 (32510671-32510858) | |
| 498-646, gnl|danRer3|chrNA (153929293-153929464) | |
| 498-646, gnl|dasNov1|scaffold_13111 (1461-1274) | |
| 498-646, gnl|echTel1|scaffold_228172 (9600-9779) | |
| 498-646, gnl|fr1|chrUn (234799050-234799212) | |
| 498-646, gnl|galGal2|chr9 (8875350-8875526) | |
| 498-646, gnl|hg17|chr3 (197587072-197587256) | |
| 498-646, gnl|Hg17|chr3 (197587223-197587075) | |
| 498-646, gnl|loxAfr1|scaffold_9746 (43358-43542) | |
| 498-646, gnl|mm7|chr16 (32047072-32046904) | |
| 498-646, gnl|Mm7|chr16 (32046919-32047067) | |
| 498-646, gnl|monDom2|scaffold_24 (26122125-26122279) | |
| 498-646, gnl|oryCun1|scaffold_205986 (36835-36667) | |
| 498-646, gnl|panTro1|chr2 (201758396-201758580) | |
| 498-646, gnl|rheMac2|chr2 (189067060-189066876) | |
| 498-646, gnl|rn3|chr11 (70292220-70292388) | |
| 498-646, gnl|tetNig1|chr15 (6070433-6070271) | |
| 498-646, gnl|xenTro1|scaffold_1579 (80367-80553) | |
| 734-852, gnl|bosTau2|chr1 (42344950-42344832) | |
| 734-852, gnl|canFam2|chr33 (32507905-32508046) | |
| 734-852, gnl|danRer3|chrNA (153926345-153926486) | |
| 734-852, gnl|echTel1|scaffold_228172 (6271-6412) | |
| 734-852, gnl|fr1|chrUn (234798531-234798675) | |
| 734-852, gnl|galGal2|chr9 (8873700-8873841) | |
| 734-852, gnl|hg17|chr3 (197583200-197583341) | |
| 734-852, gnl|Hg17|chr3 (197583338-197583220) | |
| 734-852, gnl|mm7|chr16 (32050560-32050419) | |
| 734-852, gnl|Mm7|chr16 (32050420-32050538) | |
| 734-852, gnl|monDom2|scaffold_24 (26118459-26118600) | |
| 734-852, gnl|oryCun1|scaffold_205986 (40030-39889) | |
| 734-852, gnl|panTro1|chr2 (201754708-201754849) | |
| 734-852, gnl|rheMac2|chr2 (189071169-189071028) | |
| 734-852, gnl|rn3|chr11 (70289477-70289618) | |
| 734-852, gnl|tetNig1|chr15 (6071094-6070954) | |
| 734-852, gnl|xenTro1|scaffold_1579 (77418-77556) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-104, gnl|bosTau2|chr1 (42366378-42366275) | |
| 1-104, gnl|canFam2|chr33 (32550625-32550793) | |
| 1-104, gnl|echTel1|scaffold_286000 (49966-49799) | |
| 1-104, gnl|hg17|chr3 (197647443-197647608) | |
| 1-104, gnl|Hg17|chr3 (197647606-197647506) | |
| 1-104, gnl|mm7|chr16 (32006952-32006784) | |
| 1-104, gnl|Mm7|chr16 (32006784-32006887) | |
| 1-104, gnl|monDom2|scaffold_24 (26164836-26165004) | |
| 1-104, gnl|oryCun1|scaffold_214084 (5650-5839) | |
| 1-104, gnl|panTro1|chr2 (201821172-201821337) | |
| 1-104, gnl|rn3|chr11 (70335551-70335722) | |
| 498-646, gnl|bosTau2|chr1 (42347253-42347105) | |
| 498-646, gnl|canFam2|chr33 (32510671-32510858) | |
| 498-646, gnl|danRer3|chrNA (153929293-153929464) | |
| 498-646, gnl|dasNov1|scaffold_13111 (1461-1274) | |
| 498-646, gnl|echTel1|scaffold_228172 (9600-9779) | |
| 498-646, gnl|fr1|chrUn (234799050-234799212) | |
| 498-646, gnl|galGal2|chr9 (8875350-8875526) | |
| 498-646, gnl|hg17|chr3 (197587072-197587256) | |
| 498-646, gnl|Hg17|chr3 (197587223-197587075) | |
| 498-646, gnl|loxAfr1|scaffold_9746 (43358-43542) | |
| 498-646, gnl|mm7|chr16 (32047072-32046904) | |
| 498-646, gnl|Mm7|chr16 (32046919-32047067) | |
| 498-646, gnl|monDom2|scaffold_24 (26122125-26122279) | |
| 498-646, gnl|oryCun1|scaffold_205986 (36835-36667) | |
| 498-646, gnl|panTro1|chr2 (201758396-201758580) | |
| 498-646, gnl|rheMac2|chr2 (189067060-189066876) | |
| 498-646, gnl|rn3|chr11 (70292220-70292388) | |
| 498-646, gnl|tetNig1|chr15 (6070433-6070271) | |
| 498-646, gnl|xenTro1|scaffold_1579 (80367-80553) | |
| 734-852, gnl|bosTau2|chr1 (42344950-42344832) | |
| 734-852, gnl|canFam2|chr33 (32507905-32508046) | |
| 734-852, gnl|danRer3|chrNA (153926345-153926486) | |
| 734-852, gnl|echTel1|scaffold_228172 (6271-6412) | |
| 734-852, gnl|fr1|chrUn (234798531-234798675) | |
| 734-852, gnl|galGal2|chr9 (8873700-8873841) | |
| 734-852, gnl|hg17|chr3 (197583200-197583341) | |
| 734-852, gnl|Hg17|chr3 (197583338-197583220) | |
| 734-852, gnl|mm7|chr16 (32050560-32050419) | |
| 734-852, gnl|Mm7|chr16 (32050420-32050538) | |
| 734-852, gnl|monDom2|scaffold_24 (26118459-26118600) | |
| 734-852, gnl|oryCun1|scaffold_205986 (40030-39889) | |
| 734-852, gnl|panTro1|chr2 (201754708-201754849) | |
| 734-852, gnl|rheMac2|chr2 (189071169-189071028) | |
| 734-852, gnl|rn3|chr11 (70289477-70289618) | |
| 734-852, gnl|tetNig1|chr15 (6071094-6070954) | |
| 734-852, gnl|xenTro1|scaffold_1579 (77418-77556) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |