Non-Coding RNA Search

Ss1.1-Thy1-THY010045A02.5

Sequence:


               
               CTGGCGTCCATTTCGGTGCCCCTCGGGCTTGAGCCGCCGCAACTCCGGAGGGGCCGGGCA
GTGCCCGGGGGCGCTTTTGCGCGCGGAGGGACTGCAGGAGCAGGATCTGGTCTCTGGAGA
GCCAGACACCTTATTGAAATTTGAGGAGGGATCTATCTTCTCAGAGAGCTGGGCTGGAGA
AGACTGAAGGTCAAGGTTAGAAGCCTGAGTGATTCCCCAGAGAACGTGGATGATGGCCTC
AGAGGTACCGAGAGTAACCAATCCTCTGAGCCCCTTAGTCCAGGTGCCTCAAGAGGAAGA
CGAGCAGGAAGAGGAGGTTGCTACCATGATCCTGGAGGATGACTCCTGGGTGCAGGAAGC
TGTGCTGCAGGAGGACGGCCCTGATTCCGAGCCCTTCGCCCAGAGTGCTGGCAAGGGCAG
CCCCCACGAGGAGGGGGCCGGAGGGCCTCAGGGTGCCCTTGGCCGTCTTCGAGAGCTCTG
TCGGCGCTGGCTGAGGCCAGAAGTCCACACCAAGGAGCAAATGCTGACCATGCTGCCAAA
GGAGATTCAGGCCTGGCTGCAAGAGCACCGCCCCGAAAGCAGCGAGGAGGCGGTGGCCCT
GGTGGAAGACCTGACCCAGACTCTTCGGGACAGTGGTGAGATGCGGAACCTCATAGGGAG
GGAGTGGGAGCGCCCCTCTGAGATGGAGGAGTGTGGTGTTTGCGGAGGAGGAGAAGGTGA
TACCAGGACTGAGTTTGGGTCAGCCCCACCCCTCTACTCTGTCTGCAGGCAGTCAGCACA
TTGTCATCCCACAGTGCCCTGGTTATGTGCAGTGACAGTCCCAGGATCTCAGGATAAGAG
TGGCTTAAGAGGTCTACTCATGAAGCTGCATTTAGTTAACACACTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCGTCCATTTCGGTGCCCCTCGGGCTTGAGCCGCCGCAACTCCGGAGGGGCCGGGCA
GTGCCCGGGGGCGCTTTTGCGCGCGGAGGGACTGCAGGAGCAGGATCTGGTCTCTGGAGA
GCCAGACACCTTATTGAAATTTGAGGAGGGATCTATCTTCTCAGAGAGCTGGGCTGGAGA
AGACTGAAGGTCAAGGTTAGAAGCCTGAGTGATTCCCCAGAGAACGTGGATGATGGCCTC
AGAGGTACCGAGAGTAACCAATCCTCTGAGCCCCTTAGTCCAGGTGCCTCAAGAGGAAGA
CGAGCAGGAAGAGGAGGTTGCTACCATGATCCTGGAGGATGACTCCTGGGTGCAGGAAGC
TGTGCTGCAGGAGGACGGCCCTGATTCCGAGCCCTTCGCCCAGAGTGCTGGCAAGGGCAG
CCCCCACGAGGAGGGGGCCGGAGGGCCTCAGGGTGCCCTTGGCCGTCTTCGAGAGCTCTG
TCGGCGCTGGCTGAGGCCAGAAGTCCACACCAAGGAGCAAATGCTGACCATGCTGCCAAA
GGAGATTCAGGCCTGGCTGCAAGAGCACCGCCCCGAAAGCAGCGAGGAGGCGGTGGCCCT
GGTGGAAGACCTGACCCAGACTCTTCGGGACAGTGGTGAGATGCGGAACCTCATAGGGAG
GGAGTGGGAGCGCCCCTCTGAGATGGAGGAGTGTGGTGTTTGCGGAGGAGGAGAAGGTGA
TACCAGGACTGAGTTTGGGTCAGCCCCACCCCTCTACTCTGTCTGCAGGCAGTCAGCACA
TTGTCATCCCACAGTGCCCTGGTTATGTGCAGTGACAGTCCCAGGATCTCAGGATAAGAG
TGGCTTAAGAGGTCTACTCATGAAGCTGCATTTAGTTAACACACTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7020809|dbj|BAA91283.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7020809|dbj|BAA91283.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               474-593, + strand, RNAz p=0.723797

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-593, + strand, RNAz p=0.723797

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               120-838, gnl|bosTau2|chr21 (12650165-12650892)
               

               
               120-838, gnl|Hg17|chr15 (82948053-82948779)
               

               
               120-838, gnl|Mm7|chr7 (76734606-76735379)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-838, gnl|bosTau2|chr21 (12650165-12650892)
               

               
               120-838, gnl|Hg17|chr15 (82948053-82948779)
               

               
               120-838, gnl|Mm7|chr7 (76734606-76735379)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	120-838, gnl\|bosTau2\|chr21 (12650165-12650892)
	120-838, gnl\|Hg17\|chr15 (82948053-82948779)
	120-838, gnl\|Mm7\|chr7 (76734606-76735379)