Non-Coding RNA Search

Ss1.1-Thy1-THY010045B10.5

Sequence:


               
               TAACAAAAAAGAAAAGTCACATCAGGAAAATATCTGATTTTGTGGTAGCTGACGTAGTGT
TTTCTTGTACGTGAATAGACTCCTGACATGTAGTGCACATTGATCCATAGCTTTAACTGA
CTCTGGGCTTTTGCTGACCAGGGTTTGTTTAATACACTCCATTCTAGGCCAAATCAGGAC
AAAAAGGAAAGATCCGAATCTAGGTATTTTATAATCTGCTTTTTAACCTCTAACCGCAGA
GCACGCTGATCAGACCTCATATCTCGGAGGTGTAGGAGACAAGTTAGAACTGTAGCATGT
ACCCGTTCATTTTGTTTAATTTATGGTGTCTTACGTCTGTGTTAGTGTGTCTGCACACGT
GCGAGCGTTGAAAGGAAGGAGGAAAGAGTAGGCCGCGAAGGTCGCCGCAGGCATTTCTGG
GGCCCGCCCCTCGCCCCTCGTAGGCAGCAGTCTTTCCGTGACACAGAAGGCACCACACCT
CACACCACTCTCCCGGGCGCCTGATGGACTGAGCCCCACCAGGGGACGCCACTCCCTGGG
CCTGGGCAGGGCTCACGAGCACTCTCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTC
CCTTTCTTCCCACCACAAGCACTGATGACTGTTGACGTCGTGGGAAGCCTCCTTCCTTCC
CTGCAGAAGAGAGAACGTGGCAGTCTGGGCTCGGCTCCCACCCCCGTAGAGATGCCCAAA
CTCACACCAAAACGTCGATGCTCTTCCCTTCCAGACTAGACCATTGGCCCTCCATCCATT
TCGCCTCTTGGAACGTTCTTTTCTGCACAGTTTAGGGCAGTCGAAGTACAAATCAAAAGT
CTAACTTGTCTCTGATTCCTCCTGTCGTCTATGTGTATATGCGTGAGAACAGAGGTGGAT
GAGAGTGTGCGTGTGTGCGTGTGTGCAATTTTATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACAAAAAAGAAAAGTCACATCAGGAAAATATCTGATTTTGTGGTAGCTGACGTAGTGT
TTTCTTGTACGTGAATAGACTCCTGACATGTAGTGCACATTGATCCATAGCTTTAACTGA
CTCTGGGCTTTTGCTGACCAGGGTTTGTTTAATACACTCCATTCTAGGCCAAATCAGGAC
AAAAAGGAAAGATCCGAATCTAGGTATTTTATAATCTGCTTTTTAACCTCTAACCGCAGA
GCACGCTGATCAGACCTCATATCTCGGAGGTGTAGGAGACAAGTTAGAACTGTAGCATGT
ACCCGTTCATTTTGTTTAATTTATGGTGTCTTACGTCTGTGTTAGTGTGTCTGCACACGT
GCGAGCGTTGAAAGGAAGGAGGAAAGAGTAGGCCGCGAAGGTCGCCGCAGGCATTTCTGG
GGCCCGCCCCTCGCCCCTCGTAGGCAGCAGTCTTTCCGTGACACAGAAGGCACCACACCT
CACACCACTCTCCCGGGCGCCTGATGGACTGAGCCCCACCAGGGGACGCCACTCCCTGGG
CCTGGGCAGGGCTCACGAGCACTCTCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTC
CCTTTCTTCCCACCACAAGCACTGATGACTGTTGACGTCGTGGGAAGCCTCCTTCCTTCC
CTGCAGAAGAGAGAACGTGGCAGTCTGGGCTCGGCTCCCACCCCCGTAGAGATGCCCAAA
CTCACACCAAAACGTCGATGCTCTTCCCTTCCAGACTAGACCATTGGCCCTCCATCCATT
TCGCCTCTTGGAACGTTCTTTTCTGCACAGTTTAGGGCAGTCGAAGTACAAATCAAAAGT
CTAACTTGTCTCTGATTCCTCCTGTCGTCTATGTGTATATGCGTGAGAACAGAGGTGGAT
GAGAGTGTGCGTGTGTGCGTGTGTGCAATTTTATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               471-657, - strand, RNAz p=0.998624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-657, - strand, RNAz p=0.998624

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-936, gnl|bosTau2|chr25 (32097549-32098481)
               

               
               6-936, gnl|Hg17|chr7 (101486583-101487526)
               

               
               6-936, gnl|Mm7|chr5 (135245364-135244432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-936, gnl|bosTau2|chr25 (32097549-32098481)
               

               
               6-936, gnl|Hg17|chr7 (101486583-101487526)
               

               
               6-936, gnl|Mm7|chr5 (135245364-135244432)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	6-936, gnl\|bosTau2\|chr25 (32097549-32098481)
	6-936, gnl\|Hg17\|chr7 (101486583-101487526)
	6-936, gnl\|Mm7\|chr5 (135245364-135244432)