Ss1.1-Thy1-THY010046B01.5
|
CGTCTGGCTTCCTGGAGGAGAGGGAGGGTTGAGCGGGGGGTCTCCGAGTGTGGCAGGATA
TGGAGAAGGAGCGCGAAACTCTGCAGGCCTGGAAGGAGCGTGTGGGCCAAGAGCTGGACC
GCGTGATGGCTTTCTGGCTGGAGCACTCCCACGATCGGGAGCACGGGGGCTTCTTCACGT
GCCTGGGCCGCGACGGGCGGGTGTATGACGACCTCAAGTACGTCTGGCTGCAGGGGAGGC
AGGTGTGGATGTACTGTCGCCTGTACCGCAAGCTTGAGCGCTTCCACCGCCCTGAGCTTC
TGGATGCGGCTAAAGCAGGGGGCGAATTTTTGCTGCGCCATGCCCGAGTGGCACCTCCTG
AAAAGAAGTGTGCCTTTGTGCTGACGCGGGATGGCCGGCCCGTCAAGGTGCAGCGGAGCA
TCTTCAGTGAGTGCTTCTACACCATGGCCATGAACGAGCTGTGGAGGGTGACGGCGGAGG
CACGGTACCAGAGCGAAGCGGTGGACATGATGGATCAGATCGTGCACTGGGTGCGAGAGG
ACCCCTCTGGGCTGGGCCGGCCCCAGCTCCCCGGGGCCGTGGCCTCGGAGTCCATGGCAG
TGCCCATGATGCTGCTGTGCCTGGTGGAGCAGCTCGGGGAGGAGGACGAGGAGCTGGCAG
GCCGCTACGCGCAGCTGGGGCACTGGTGCGCTCGGAGGATCCTGCAGCACGTCCAGAGGG
ATGGACAGGCTGTGCTGGAGAATGTGTCGGAAGATGGCGAGGAACTTTCTGGCTGCCTGG
GGAGACACCAGAACCCAGGCCACGCGCTGGAAGCTGGCTGGTTCCTGCTCCGCCACAGCA
GCCGGAGCGGTGACGCCAAACTTCGAGCCCACGTCATCGACACGTTCCTGCTACTGCCTT
TCCGCTCCGGATGGGACGCTGATCACGGAGGCCTCTTCTACTTCCAGGATGCCGATGGCC
TCTGCCCCACCCAGCTGGAGTGGGCCATGAAGCTCTGGTGGCCGCACAGCGAAGCCATGA
TCGCCTTTCTCATGGGCTACAGTGAGAGCGGGGACCCTGCCTTACTGCGTCTCTTCTACC
AGGTGGCCGAGTACACGTTTCGCCAGTTTCGTGATCCCGAGTACGGGGAATGGTTTGGCT
ACCTGAACCGAGAGGGGAAGGTTGCCCTCACTATCAAGGGGGGTCCCTTTAAAGGCTGCT
TCCACGTGCCGCGGTGCCTTGCCATGTGCGAAGAGATGCTGAGCGCCCTGCTGAGCCGCC
TCGCCTAGGCTCTACGGCGCCCGGTCCTCGCCCGCTGACCCCGCCCGCCGAAGCGCAGAA
TAAAGCTGAGCCTGCACCATAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTCTGGCTTCCTGGAGGAGAGGGAGGGTTGAGCGGGGGGTCTCCGAGTGTGGCAGGATA
TGGAGAAGGAGCGCGAAACTCTGCAGGCCTGGAAGGAGCGTGTGGGCCAAGAGCTGGACC
GCGTGATGGCTTTCTGGCTGGAGCACTCCCACGATCGGGAGCACGGGGGCTTCTTCACGT
GCCTGGGCCGCGACGGGCGGGTGTATGACGACCTCAAGTACGTCTGGCTGCAGGGGAGGC
AGGTGTGGATGTACTGTCGCCTGTACCGCAAGCTTGAGCGCTTCCACCGCCCTGAGCTTC
TGGATGCGGCTAAAGCAGGGGGCGAATTTTTGCTGCGCCATGCCCGAGTGGCACCTCCTG
AAAAGAAGTGTGCCTTTGTGCTGACGCGGGATGGCCGGCCCGTCAAGGTGCAGCGGAGCA
TCTTCAGTGAGTGCTTCTACACCATGGCCATGAACGAGCTGTGGAGGGTGACGGCGGAGG
CACGGTACCAGAGCGAAGCGGTGGACATGATGGATCAGATCGTGCACTGGGTGCGAGAGG
ACCCCTCTGGGCTGGGCCGGCCCCAGCTCCCCGGGGCCGTGGCCTCGGAGTCCATGGCAG
TGCCCATGATGCTGCTGTGCCTGGTGGAGCAGCTCGGGGAGGAGGACGAGGAGCTGGCAG
GCCGCTACGCGCAGCTGGGGCACTGGTGCGCTCGGAGGATCCTGCAGCACGTCCAGAGGG
ATGGACAGGCTGTGCTGGAGAATGTGTCGGAAGATGGCGAGGAACTTTCTGGCTGCCTGG
GGAGACACCAGAACCCAGGCCACGCGCTGGAAGCTGGCTGGTTCCTGCTCCGCCACAGCA
GCCGGAGCGGTGACGCCAAACTTCGAGCCCACGTCATCGACACGTTCCTGCTACTGCCTT
TCCGCTCCGGATGGGACGCTGATCACGGAGGCCTCTTCTACTTCCAGGATGCCGATGGCC
TCTGCCCCACCCAGCTGGAGTGGGCCATGAAGCTCTGGTGGCCGCACAGCGAAGCCATGA
TCGCCTTTCTCATGGGCTACAGTGAGAGCGGGGACCCTGCCTTACTGCGTCTCTTCTACC
AGGTGGCCGAGTACACGTTTCGCCAGTTTCGTGATCCCGAGTACGGGGAATGGTTTGGCT
ACCTGAACCGAGAGGGGAAGGTTGCCCTCACTATCAAGGGGGGTCCCTTTAAAGGCTGCT
TCCACGTGCCGCGGTGCCTTGCCATGTGCGAAGAGATGCTGAGCGCCCTGCTGAGCCGCC
TCGCCTAGGCTCTACGGCGCCCGGTCCTCGCCCGCTGACCCCGCCCGCCGAAGCGCAGAA
TAAAGCTGAGCCTGCACCATAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
488-716, gnl|bosTau2|chr7 (6320158-6319930) |
|
488-716, gnl|Hg17|chrX (152729382-152729154) |
|
488-716, gnl|Mm7|chrX (69315992-69315765) |
| |
|
795-986, gnl|bosTau2|chr7 (6318938-6318746) |
|
795-986, gnl|canFam2|chrX (124829148-124829363) |
|
795-986, gnl|danRer3|chrNA (186808758-186808569) |
|
795-986, gnl|dasNov1|scaffold_21672 (18352-18140) |
|
795-986, gnl|fr1|chrUn (287869694-287869874) |
|
795-986, gnl|hg17|chrX (152727747-152727962) |
|
795-986, gnl|Hg17|chrX (152727957-152727765) |
|
795-986, gnl|loxAfr1|scaffold_49981 (4790-4577) |
|
795-986, gnl|mm7|chrX (69314437-69314646) |
|
795-986, gnl|Mm7|chrX (69314641-69314451) |
|
795-986, gnl|monDom2|scaffold_216 (46009-46204) |
|
795-986, gnl|panTro1|chrX (158046287-158046502) |
|
795-986, gnl|rheMac2|chrX (152062812-152063027) |
|
795-986, gnl|rn3|chrX (159930862-159931071) |
|
795-986, gnl|tetNig1|chrUn_random (93829065-93829257) |
|
795-986, gnl|xenTro1|scaffold_101 (846425-846213) |
| |
|
1193-1334, gnl|bosTau2|chr7 (6315456-6315310) |
|
1193-1334, gnl|Hg17|chrX (152721706-152721574) |
|
1193-1334, gnl|Mm7|chrX (69308914-69308777) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
488-716, gnl|bosTau2|chr7 (6320158-6319930) |
|
488-716, gnl|Hg17|chrX (152729382-152729154) |
|
488-716, gnl|Mm7|chrX (69315992-69315765) |
| |
|
795-986, gnl|bosTau2|chr7 (6318938-6318746) |
|
795-986, gnl|canFam2|chrX (124829148-124829363) |
|
795-986, gnl|danRer3|chrNA (186808758-186808569) |
|
795-986, gnl|dasNov1|scaffold_21672 (18352-18140) |
|
795-986, gnl|fr1|chrUn (287869694-287869874) |
|
795-986, gnl|hg17|chrX (152727747-152727962) |
|
795-986, gnl|Hg17|chrX (152727957-152727765) |
|
795-986, gnl|loxAfr1|scaffold_49981 (4790-4577) |
|
795-986, gnl|mm7|chrX (69314437-69314646) |
|
795-986, gnl|Mm7|chrX (69314641-69314451) |
|
795-986, gnl|monDom2|scaffold_216 (46009-46204) |
|
795-986, gnl|panTro1|chrX (158046287-158046502) |
|
795-986, gnl|rheMac2|chrX (152062812-152063027) |
|
795-986, gnl|rn3|chrX (159930862-159931071) |
|
795-986, gnl|tetNig1|chrUn_random (93829065-93829257) |
|
795-986, gnl|xenTro1|scaffold_101 (846425-846213) |
| |
|
1193-1334, gnl|bosTau2|chr7 (6315456-6315310) |
|
1193-1334, gnl|Hg17|chrX (152721706-152721574) |
|
1193-1334, gnl|Mm7|chrX (69308914-69308777) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
cty (0.20816) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pla (0.133672) |
|
bla (0.124347) |
|
eep (0.122564) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
cty (0.20816) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pla (0.133672) |
|
bla (0.124347) |
|
eep (0.122564) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
