Non-Coding RNA Search

Ss1.1-Thy1-THY010046B02.5

Sequence:


               
               TTTTAAAGTGAAGAAAACAGTTGGGGAAGCTCCAGATGGGCCAGCCTGCGCCTACTTGGC
CGCTGCCAGCCATACCTCCGTGTACTTGGTGGGTTCTACCCTGAGCCTCGTTCCAGGGCT
CCCCTCGGGGGAATCCACGCCCTGGAGCAGCTTGTCTCCTCCAGGCCTGGAGACCTTGGT
GACCGAGCTCTGTGCTGCCCTGAAGCCGCGCCTCCAGCCAGGGGGTGCCCTGCTGACAGC
ACCTGGCAGTGTCCTTCTACGGGGCCCCCCGGGCAGTGGGAAAACCACCGCAGTGACTGC
CGCCTGCGGCCGCCTTGGGCTCCACTTACTGAAGGTGCCCTGCTCCAGCCTCTGTGCAGA
CAGTAGTGGGGCTGTGGAGACAAAACTGCAGGCCGCTTTCTCCCGGGCCCGGCGCTGCCG
GCCTGTGGTTCTGTTGCTGACAGCCGTGGACCTGCTGGGCCGGGACCGCGATGGGCTAGG
TGAGGACGCCCGTGTGGTGGCCACACTGCGCCGCCTCCTCCTGGACGAAGACCCCCTCAC
CAGCCACCCTCCCCTGATGGTTGTGGCCACCACGAGCCGGGCCCAGGACCTGCCTGCTGA
TGTGCAGACTGCGTTTCCTCATGAGCTGGAGGTGCCTGTGCTGTCAGAGGGGCAGCGGCT
CAGCATCCTGCAGGCCCTCACTGCCCACCTCCCCCTGGGCCAAGAGGTGAACCTGGCACA
GCTGGCACGACGGTGCGCGGGCTTTGTAGTGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAGTGAAGAAAACAGTTGGGGAAGCTCCAGATGGGCCAGCCTGCGCCTACTTGGC
CGCTGCCAGCCATACCTCCGTGTACTTGGTGGGTTCTACCCTGAGCCTCGTTCCAGGGCT
CCCCTCGGGGGAATCCACGCCCTGGAGCAGCTTGTCTCCTCCAGGCCTGGAGACCTTGGT
GACCGAGCTCTGTGCTGCCCTGAAGCCGCGCCTCCAGCCAGGGGGTGCCCTGCTGACAGC
ACCTGGCAGTGTCCTTCTACGGGGCCCCCCGGGCAGTGGGAAAACCACCGCAGTGACTGC
CGCCTGCGGCCGCCTTGGGCTCCACTTACTGAAGGTGCCCTGCTCCAGCCTCTGTGCAGA
CAGTAGTGGGGCTGTGGAGACAAAACTGCAGGCCGCTTTCTCCCGGGCCCGGCGCTGCCG
GCCTGTGGTTCTGTTGCTGACAGCCGTGGACCTGCTGGGCCGGGACCGCGATGGGCTAGG
TGAGGACGCCCGTGTGGTGGCCACACTGCGCCGCCTCCTCCTGGACGAAGACCCCCTCAC
CAGCCACCCTCCCCTGATGGTTGTGGCCACCACGAGCCGGGCCCAGGACCTGCCTGCTGA
TGTGCAGACTGCGTTTCCTCATGAGCTGGAGGTGCCTGTGCTGTCAGAGGGGCAGCGGCT
CAGCATCCTGCAGGCCCTCACTGCCCACCTCCCCCTGGGCCAAGAGGTGAACCTGGCACA
GCTGGCACGACGGTGCGCGGGCTTTGTAGTGGGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               88-223, + strand, RNAz p=0.960795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-223, + strand, RNAz p=0.960795

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               88-223, gnl|bosTau2|chr23 (13027316-13027181)
               

               
               88-223, gnl|canFam2|chr12 (14511758-14511850)
               

               
               88-223, gnl|dasNov1|scaffold_24313 (9191-9099)
               

               
               88-223, gnl|echTel1|scaffold_323377 (124124-124216)
               

               
               88-223, gnl|fr1|chrUn (224921872-224921964)
               

               
               88-223, gnl|galGal2|chr14 (16204048-16203954)
               

               
               88-223, gnl|hg17|chr6 (43045377-43045469)
               

               
               88-223, gnl|Hg17|chr6 (43045518-43045383)
               

               
               88-223, gnl|mm7|chr17 (44849841-44849749)
               

               
               88-223, gnl|Mm7|chr17 (44849698-44849833)
               

               
               88-223, gnl|oryCun1|scaffold_117209 (82-4)
               

               
               88-223, gnl|panTro1|chr5 (43641058-43641150)
               

               
               88-223, gnl|rheMac2|chr4 (42856528-42856620)
               

               
               88-223, gnl|rn3|chr9 (10132886-10132978)
               

               
               88-223, gnl|tetNig1|chrUn_random (47768183-47768093)
               


               
               333-552, gnl|bosTau2|chr23 (13025830-13025611)
               

               
               333-552, gnl|Hg17|chr6 (43044216-43044001)
               

               
               333-552, gnl|Mm7|chr17 (44850855-44851075)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-223, gnl|bosTau2|chr23 (13027316-13027181)
               

               
               88-223, gnl|canFam2|chr12 (14511758-14511850)
               

               
               88-223, gnl|dasNov1|scaffold_24313 (9191-9099)
               

               
               88-223, gnl|echTel1|scaffold_323377 (124124-124216)
               

               
               88-223, gnl|fr1|chrUn (224921872-224921964)
               

               
               88-223, gnl|galGal2|chr14 (16204048-16203954)
               

               
               88-223, gnl|hg17|chr6 (43045377-43045469)
               

               
               88-223, gnl|Hg17|chr6 (43045518-43045383)
               

               
               88-223, gnl|mm7|chr17 (44849841-44849749)
               

               
               88-223, gnl|Mm7|chr17 (44849698-44849833)
               

               
               88-223, gnl|oryCun1|scaffold_117209 (82-4)
               

               
               88-223, gnl|panTro1|chr5 (43641058-43641150)
               

               
               88-223, gnl|rheMac2|chr4 (42856528-42856620)
               

               
               88-223, gnl|rn3|chr9 (10132886-10132978)
               

               
               88-223, gnl|tetNig1|chrUn_random (47768183-47768093)
               


               
               333-552, gnl|bosTau2|chr23 (13025830-13025611)
               

               
               333-552, gnl|Hg17|chr6 (43044216-43044001)
               

               
               333-552, gnl|Mm7|chr17 (44850855-44851075)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	88-223, gnl\|bosTau2\|chr23 (13027316-13027181)
	88-223, gnl\|canFam2\|chr12 (14511758-14511850)
	88-223, gnl\|dasNov1\|scaffold_24313 (9191-9099)
	88-223, gnl\|echTel1\|scaffold_323377 (124124-124216)
	88-223, gnl\|fr1\|chrUn (224921872-224921964)
	88-223, gnl\|galGal2\|chr14 (16204048-16203954)
	88-223, gnl\|hg17\|chr6 (43045377-43045469)
	88-223, gnl\|Hg17\|chr6 (43045518-43045383)
	88-223, gnl\|mm7\|chr17 (44849841-44849749)
	88-223, gnl\|Mm7\|chr17 (44849698-44849833)
	88-223, gnl\|oryCun1\|scaffold_117209 (82-4)
	88-223, gnl\|panTro1\|chr5 (43641058-43641150)
	88-223, gnl\|rheMac2\|chr4 (42856528-42856620)
	88-223, gnl\|rn3\|chr9 (10132886-10132978)
	88-223, gnl\|tetNig1\|chrUn_random (47768183-47768093)

	333-552, gnl\|bosTau2\|chr23 (13025830-13025611)
	333-552, gnl\|Hg17\|chr6 (43044216-43044001)
	333-552, gnl\|Mm7\|chr17 (44850855-44851075)