Ss1.1-Thy1-THY010046G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGCCGGATCGGGGAGAGTATCTGCTGGAGCCAGGCGGGAGGGGAGTGGGAAGAGACAG CCGCGGGTGCGTGGATTTGAGTCTTCGCATTTCTAATCTAAGATCTCGAAATGCATCGTG ATTCCTGTCCATTGGACTGTAAAGTTTATGTAGGTAATCTGGGAAACAATGGTAACAAGA CTGAATTGGAACGAGCTTTTGGCTATTATGGACCACTCCGAAGTGTATGGGTTGCTAGAA ATCCTCCTGGCTTTGCTTTTGTTGAATTTGAAGATCCCCGAGATGCAGCTGATGCTGTCC GAGAGCTAGATGGGAGAACGCTGTGTGGCTGCCGAGTAAGAGTGGAACTCTCTAATGGTG AAAAGAGAAGTAGAAATCGTGGCCCACCTCCTTCTTGGGGTCGTCGCCCTCGAGATGATT ATCGGAGAAGGAGTCCTCCACCTCGCCGCAGATCTCCAAGACGGAGAAGCTTCTCCCGTA GCCGGAGCAGGTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCACTTTCTCGGGAGAGAA ATCACAAGCCGTCCCGTTCTTTCTCTAGGTCTCGTAGCCGATCCAGGTCAAATGAAAGGA AATAGAAAACCAGTTTGCAAGAGGAGTGGTGTACAGCAAATAACTTCATTTGACAGGAGT ATGTACAGAAAATTCAAGTTTTGTTTGAGACTTCATAAGCTTGGTGCATTTTTAAGATGT TTTAGCTGTTCACATTTGTTTGTCTCTTGGCAACAAAAGTAAAGATGTAATTTTTACACA TAAAGATGTAATTCTCTATGGTTTGAAATGAATCATATGAGGCATGTAATACCAAGAATT GTTACTTTACAATGTTCCCTTAAGCAAAATTGAATTTGATTTTTTTTTTTAAGTCTTGCA TAGATTGATAATAAACCTCTAACTCCTGCCCAGCTAAACTGTGATGTTCAATATTACTGA AGCAAAACCGGCAAAAATTTGAGAAGACTTTCCATAGCTGGAATATGGTGTGCAGTTGTA GTTGAGCAAGCAGTCTTTAAAAGCTGCTATGAATGCAAACCAGCAGGTAAAAGTTAAAGC TGCATCATTAAACTACTAGATTAGAGGTTTAAAAATCCCACTAGTCTTCATAATGGACAG GATATTGTCCAGTTGTATAGAATCTAAGAAGTTTCAGGAAAATTAGTTTACTTTTGCTTT AGGTCATAAGTTCCTTCTGTGATTGCTATATATGAATACATAGCTCTTTGTAACATTCTT TATTTGAAAATTGGAGACTATTCAAGATACATTCTGATGTCCTACCAGTTTAAGGGTACA TTGTAGAGCTGAACTTTGAGTTACTGTGCAAGATTTTTTTTCATGCTGTCATTTGTAATA TGTTTTGTGAGAATCCTTGGGATTAAAGTTTTGGTTACAAATTGTTGTTTAACCTGAAAG CCTGTTTTTCCTTGCAAAACTAAAATCTGTGAGCTTGGTACCAAGTCCAGGTATAACATT CCTATTGGAAGCCATACTTATATTTTCTTGTAAAGTGCTTTTGACAATAAAATATTAGCA TAATTGTGTAATAGTCGAACCCACTGTTACCATAGTTCTTGTCCCATAGAAGGCAGTTGG TTACACAAATCTTAACTCTGTAAGCACAGTTGAGGCTTTTGAAATGAAAGGAATTGTGTC CACCTAAGTGATAAAACTTAAATTTTTAGGCGTAGAAGCCAGTTCAAAAAGTCCATGATA CTCAGTGACCAACATTTTAAAGTATAGCCACCTGATACATTATAATCCAAAGTTGCCCTT TAAAAGGGGCTTTTATCATTAGCATGAAAACTTTAACACAGAGCTTTAAAAATTGCTTCC ATTTTATATAATTTGAGGTGTTGCATGGGAATTCTAAATTGGTCCGTCATGATGTAAAAT CCACTATATGGTTAAAATGTAACAGTACAGAGTTGCATACGGAGGCATGCATAACTTTCC TCTTAGAAATCTAGAGGAGTTGTAACTTCAAATTTTTGTGCAATTAGATTAAATCATAAT ACAACAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGCCGGATCGGGGAGAGTATCTGCTGGAGCCAGGCGGGAGGGGAGTGGGAAGAGACAG CCGCGGGTGCGTGGATTTGAGTCTTCGCATTTCTAATCTAAGATCTCGAAATGCATCGTG ATTCCTGTCCATTGGACTGTAAAGTTTATGTAGGTAATCTGGGAAACAATGGTAACAAGA CTGAATTGGAACGAGCTTTTGGCTATTATGGACCACTCCGAAGTGTATGGGTTGCTAGAA ATCCTCCTGGCTTTGCTTTTGTTGAATTTGAAGATCCCCGAGATGCAGCTGATGCTGTCC GAGAGCTAGATGGGAGAACGCTGTGTGGCTGCCGAGTAAGAGTGGAACTCTCTAATGGTG AAAAGAGAAGTAGAAATCGTGGCCCACCTCCTTCTTGGGGTCGTCGCCCTCGAGATGATT ATCGGAGAAGGAGTCCTCCACCTCGCCGCAGATCTCCAAGACGGAGAAGCTTCTCCCGTA GCCGGAGCAGGTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCACTTTCTCGGGAGAGAA ATCACAAGCCGTCCCGTTCTTTCTCTAGGTCTCGTAGCCGATCCAGGTCAAATGAAAGGA AATAGAAAACCAGTTTGCAAGAGGAGTGGTGTACAGCAAATAACTTCATTTGACAGGAGT ATGTACAGAAAATTCAAGTTTTGTTTGAGACTTCATAAGCTTGGTGCATTTTTAAGATGT TTTAGCTGTTCACATTTGTTTGTCTCTTGGCAACAAAAGTAAAGATGTAATTTTTACACA TAAAGATGTAATTCTCTATGGTTTGAAATGAATCATATGAGGCATGTAATACCAAGAATT GTTACTTTACAATGTTCCCTTAAGCAAAATTGAATTTGATTTTTTTTTTTAAGTCTTGCA TAGATTGATAATAAACCTCTAACTCCTGCCCAGCTAAACTGTGATGTTCAATATTACTGA AGCAAAACCGGCAAAAATTTGAGAAGACTTTCCATAGCTGGAATATGGTGTGCAGTTGTA GTTGAGCAAGCAGTCTTTAAAAGCTGCTATGAATGCAAACCAGCAGGTAAAAGTTAAAGC TGCATCATTAAACTACTAGATTAGAGGTTTAAAAATCCCACTAGTCTTCATAATGGACAG GATATTGTCCAGTTGTATAGAATCTAAGAAGTTTCAGGAAAATTAGTTTACTTTTGCTTT AGGTCATAAGTTCCTTCTGTGATTGCTATATATGAATACATAGCTCTTTGTAACATTCTT TATTTGAAAATTGGAGACTATTCAAGATACATTCTGATGTCCTACCAGTTTAAGGGTACA TTGTAGAGCTGAACTTTGAGTTACTGTGCAAGATTTTTTTTCATGCTGTCATTTGTAATA TGTTTTGTGAGAATCCTTGGGATTAAAGTTTTGGTTACAAATTGTTGTTTAACCTGAAAG CCTGTTTTTCCTTGCAAAACTAAAATCTGTGAGCTTGGTACCAAGTCCAGGTATAACATT CCTATTGGAAGCCATACTTATATTTTCTTGTAAAGTGCTTTTGACAATAAAATATTAGCA TAATTGTGTAATAGTCGAACCCACTGTTACCATAGTTCTTGTCCCATAGAAGGCAGTTGG TTACACAAATCTTAACTCTGTAAGCACAGTTGAGGCTTTTGAAATGAAAGGAATTGTGTC CACCTAAGTGATAAAACTTAAATTTTTAGGCGTAGAAGCCAGTTCAAAAAGTCCATGATA CTCAGTGACCAACATTTTAAAGTATAGCCACCTGATACATTATAATCCAAAGTTGCCCTT TAAAAGGGGCTTTTATCATTAGCATGAAAACTTTAACACAGAGCTTTAAAAATTGCTTCC ATTTTATATAATTTGAGGTGTTGCATGGGAATTCTAAATTGGTCCGTCATGATGTAAAAT CCACTATATGGTTAAAATGTAACAGTACAGAGTTGCATACGGAGGCATGCATAACTTTCC TCTTAGAAATCTAGAGGAGTTGTAACTTCAAATTTTTGTGCAATTAGATTAAATCATAAT ACAACAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-772, gnl|bosTau2|chr1 (31769028-31769801) | |
| 1-772, gnl|Hg17|chr11 (18643064-18643841) | |
| 1-772, gnl|Mm7|chr11 (98734689-98733923) | |
| 141-313, gnl|bosTau2|chr11 (16011904-16012076) | |
| 141-313, gnl|canFam2|chr17 (33917579-33917768) | |
| 141-313, gnl|danRer3|chr9 (4951231-4951414) | |
| 141-313, gnl|dasNov1|scaffold_97875 (4782-4971) | |
| 141-313, gnl|echTel1|scaffold_325042 (79984-80142) | |
| 141-313, gnl|fr1|chrUn (98421166-98420984) | |
| 141-313, gnl|galGal2|chrUn (139348014-139347831) | |
| 141-313, gnl|hg17|chr2 (38888802-38888991) | |
| 141-313, gnl|Hg17|chr2 (38888982-38888810) | |
| 141-313, gnl|loxAfr1|scaffold_87298 (9431-9242) | |
| 141-313, gnl|mm7|chr17 (78501556-78501745) | |
| 141-313, gnl|Mm7|chr17 (78501736-78501564) | |
| 141-313, gnl|monDom2|scaffold_23 (41979911-41980099) | |
| 141-313, gnl|oryCun1|scaffold_156554 (6128-6317) | |
| 141-313, gnl|panTro1|chr12 (40381027-40381216) | |
| 141-313, gnl|rheMac2|chr13 (38736796-38736985) | |
| 141-313, gnl|rn3|chr6 (3103009-3103198) | |
| 141-313, gnl|tetNig1|chr16 (6806463-6806282) | |
| 141-313, gnl|xenTro1|scaffold_41 (551262-551451) | |
| 1215-1466, gnl|bosTau2|chr16 (16366375-16366624) | |
| 1215-1466, gnl|Hg17|chr6 (36678337-36678661) | |
| 1215-1466, gnl|Mm7|chr18 (8430757-8430425) | |
| 1837-2064, gnl|bosTau2|chr12 (31098633-31098859) | |
| 1837-2064, gnl|Hg17|chr6 (36678984-36679188) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-772, gnl|bosTau2|chr1 (31769028-31769801) | |
| 1-772, gnl|Hg17|chr11 (18643064-18643841) | |
| 1-772, gnl|Mm7|chr11 (98734689-98733923) | |
| 141-313, gnl|bosTau2|chr11 (16011904-16012076) | |
| 141-313, gnl|canFam2|chr17 (33917579-33917768) | |
| 141-313, gnl|danRer3|chr9 (4951231-4951414) | |
| 141-313, gnl|dasNov1|scaffold_97875 (4782-4971) | |
| 141-313, gnl|echTel1|scaffold_325042 (79984-80142) | |
| 141-313, gnl|fr1|chrUn (98421166-98420984) | |
| 141-313, gnl|galGal2|chrUn (139348014-139347831) | |
| 141-313, gnl|hg17|chr2 (38888802-38888991) | |
| 141-313, gnl|Hg17|chr2 (38888982-38888810) | |
| 141-313, gnl|loxAfr1|scaffold_87298 (9431-9242) | |
| 141-313, gnl|mm7|chr17 (78501556-78501745) | |
| 141-313, gnl|Mm7|chr17 (78501736-78501564) | |
| 141-313, gnl|monDom2|scaffold_23 (41979911-41980099) | |
| 141-313, gnl|oryCun1|scaffold_156554 (6128-6317) | |
| 141-313, gnl|panTro1|chr12 (40381027-40381216) | |
| 141-313, gnl|rheMac2|chr13 (38736796-38736985) | |
| 141-313, gnl|rn3|chr6 (3103009-3103198) | |
| 141-313, gnl|tetNig1|chr16 (6806463-6806282) | |
| 141-313, gnl|xenTro1|scaffold_41 (551262-551451) | |
| 1215-1466, gnl|bosTau2|chr16 (16366375-16366624) | |
| 1215-1466, gnl|Hg17|chr6 (36678337-36678661) | |
| 1215-1466, gnl|Mm7|chr18 (8430757-8430425) | |
| 1837-2064, gnl|bosTau2|chr12 (31098633-31098859) | |
| 1837-2064, gnl|Hg17|chr6 (36678984-36679188) |
| Expressed library(ies): 68 entry(ies) | More info |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
| fty (1.05504) | |
| amn (0.835422) | |
| elu (0.770713) | |
| eje (0.691836) | |
| ste (0.676041) | |
| spl (0.572738) | |
| ill (0.526778) | |
| ova (0.516529) | |
| pro (0.512033) | |
| eep (0.490256) | |
| nco (0.485201) | |
| csp (0.483559) | |
| pgl (0.473934) | |
| med (0.465008) | |
| mgp (0.461361) | |
| liv (0.438853) | |
| pty (0.428143) | |
| tes (0.415628) | |
| hea (0.408998) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| bla (0.373042) | |
| tra (0.369276) | |
| cly (0.361925) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (1.05504) | |
| amn (0.835422) | |
| elu (0.770713) | |
| eje (0.691836) | |
| ste (0.676041) | |
| spl (0.572738) | |
| ill (0.526778) | |
| ova (0.516529) | |
| pro (0.512033) | |
| eep (0.490256) | |
| nco (0.485201) | |
| csp (0.483559) | |
| pgl (0.473934) | |
| med (0.465008) | |
| mgp (0.461361) | |
| liv (0.438853) | |
| pty (0.428143) | |
| tes (0.415628) | |
| hea (0.408998) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| bla (0.373042) | |
| tra (0.369276) | |
| cly (0.361925) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eru (0.120048) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |