Ss1.1-Thy1-THY010048A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGGGCTGGGGAAGCCAGAGACCGGCGCCCCTGACCTTGGTTTCTCCCCGTGGCAGGTC TGCGCAAGGACCATGGGTGCGTCGCTGGGCAGCGGCGCGCGGGTGGCTCTCCTGCCCCGC CAGGCCTGCGGCGCCGTCCGGCGCTGGGCACCCCCCGCGCCCGCCCGAGACTGCCACTCC AAGACGGGCCTGCCGCGTCCTGTGCCCCTGAAGAAGCGCGGATACGATGTCACCAGGAAT CCGCATCTCAACAAGGGTATGGCCTTTACACTTGAAGAAAGGCTGCAGCTTGGAATCCAT GGCCTAATCCCCCCCTGCTTCTTGAGCCAGGACGTCCAGCTCCTCCGGATCATGAGATAC TACGAGCGGCAGCAGAGTGACCTGGACAAGTACATCATTCTGATGACCCTCCAAGACCGG AACGAGAAGCTCTTCTACCGAGTGCTGACGTCCGACGTGGAGAAATTCATGCCCATCGTG TACACGCCCACCGTGGGGCTGGCCTGTCAGCACTACGGCCTGACCTTCCGCAGGCCCCGT GGGCTCTTTATCACCATTCATGACAAGGGCCATCTTCCAACAATGCTGAACTCTTGGCCA GAAGATGATATTAAGGCTGTGGTGGTGACCGATGGGGAGCGCATCCTGGGCCTGGGAGAC CTGGGCTGCTACGGCATGGGCATCCCCGTGGGCAAGCTGGCCCTGTACACGGCGTGTGGA GGCGTCAACCCTCGGCAGTGCCTCCCTGTCCTGCTGGACGTCGGCACCAACAACGAGGAG CTGCTCCGAGACCCTCTGTACATCGGCCTGAAGCACCGGCGCGTGCGCGGCCAAGATTAC GACGACCTTCTGGACGAGTTCATGCAGGCTGTGACGGACAAGTTTGGAATAAATTGCCTC ATTCAGTTTGAAGACTTTGCCAACGCCAATGCCTTCCGCCTTCTCAACAAATACCGCAAC AAGTACTGCATGTTCAACGATGACATCCAAGGCACAGCCTCCGTCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGGGCTGGGGAAGCCAGAGACCGGCGCCCCTGACCTTGGTTTCTCCCCGTGGCAGGTC TGCGCAAGGACCATGGGTGCGTCGCTGGGCAGCGGCGCGCGGGTGGCTCTCCTGCCCCGC CAGGCCTGCGGCGCCGTCCGGCGCTGGGCACCCCCCGCGCCCGCCCGAGACTGCCACTCC AAGACGGGCCTGCCGCGTCCTGTGCCCCTGAAGAAGCGCGGATACGATGTCACCAGGAAT CCGCATCTCAACAAGGGTATGGCCTTTACACTTGAAGAAAGGCTGCAGCTTGGAATCCAT GGCCTAATCCCCCCCTGCTTCTTGAGCCAGGACGTCCAGCTCCTCCGGATCATGAGATAC TACGAGCGGCAGCAGAGTGACCTGGACAAGTACATCATTCTGATGACCCTCCAAGACCGG AACGAGAAGCTCTTCTACCGAGTGCTGACGTCCGACGTGGAGAAATTCATGCCCATCGTG TACACGCCCACCGTGGGGCTGGCCTGTCAGCACTACGGCCTGACCTTCCGCAGGCCCCGT GGGCTCTTTATCACCATTCATGACAAGGGCCATCTTCCAACAATGCTGAACTCTTGGCCA GAAGATGATATTAAGGCTGTGGTGGTGACCGATGGGGAGCGCATCCTGGGCCTGGGAGAC CTGGGCTGCTACGGCATGGGCATCCCCGTGGGCAAGCTGGCCCTGTACACGGCGTGTGGA GGCGTCAACCCTCGGCAGTGCCTCCCTGTCCTGCTGGACGTCGGCACCAACAACGAGGAG CTGCTCCGAGACCCTCTGTACATCGGCCTGAAGCACCGGCGCGTGCGCGGCCAAGATTAC GACGACCTTCTGGACGAGTTCATGCAGGCTGTGACGGACAAGTTTGGAATAAATTGCCTC ATTCAGTTTGAAGACTTTGCCAACGCCAATGCCTTCCGCCTTCTCAACAAATACCGCAAC AAGTACTGCATGTTCAACGATGACATCCAAGGCACAGCCTCCGTCGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 26-256, gnl|bosTau2|chr29 (5735034-5734804) | |
| 26-256, gnl|Hg17|chr11 (86060681-86060451) | |
| 26-256, gnl|Mm7|chr7 (85569726-85569957) | |
| 390-539, gnl|bosTau2|chr29 (5630024-5629875) | |
| 390-539, gnl|canFam2|chr21 (16003860-16003704) | |
| 390-539, gnl|danRer3|chr9 (31105908-31106064) | |
| 390-539, gnl|dasNov1|scaffold_7839 (78846-78690) | |
| 390-539, gnl|echTel1|scaffold_263334 (4827-4983) | |
| 390-539, gnl|fr1|chrUn (203911139-203911295) | |
| 390-539, gnl|galGal2|chr1 (180620273-180620117) | |
| 390-539, gnl|hg17|chr11 (85945239-85945395) | |
| 390-539, gnl|Hg17|chr11 (85945392-85945243) | |
| 390-539, gnl|loxAfr1|scaffold_77680 (1080-1236) | |
| 390-539, gnl|mm7|chr7 (85676535-85676379) | |
| 390-539, gnl|Mm7|chr7 (85676380-85676529) | |
| 390-539, gnl|monDom2|scaffold_46 (1004166-1004010) | |
| 390-539, gnl|oryCun1|scaffold_211779 (110270-110114) | |
| 390-539, gnl|panTro1|chr9 (87783021-87783177) | |
| 390-539, gnl|rheMac2|chr14 (84883414-84883570) | |
| 390-539, gnl|rn3|chr1 (146396114-146395958) | |
| 390-539, gnl|tetNig1|chr2 (9257016-9256860) | |
| 390-539, gnl|xenTro1|scaffold_195 (1397771-1397615) | |
| 614-778, gnl|bosTau2|chr29 (5580534-5580370) | |
| 614-778, gnl|canFam2|chr21 (16048328-16048156) | |
| 614-778, gnl|danRer3|chr9 (31105415-31105582) | |
| 614-778, gnl|dasNov1|scaffold_29336 (699-512) | |
| 614-778, gnl|echTel1|scaffold_272587 (1279-1467) | |
| 614-778, gnl|fr1|chrUn (203910718-203910887) | |
| 614-778, gnl|galGal2|chr3 (76169835-76169645) | |
| 614-778, gnl|hg17|chr11 (85886650-85886835) | |
| 614-778, gnl|Hg17|chr11 (85886816-85886652) | |
| 614-778, gnl|loxAfr1|scaffold_97549 (4451-4639) | |
| 614-778, gnl|mm7|chr7 (85745176-85744989) | |
| 614-778, gnl|Mm7|chr7 (85745008-85745172) | |
| 614-778, gnl|monDom2|scaffold_46 (1064056-1063871) | |
| 614-778, gnl|oryCun1|scaffold_211779 (155057-154870) | |
| 614-778, gnl|panTro1|chr9 (87543779-87543964) | |
| 614-778, gnl|rheMac2|chr14 (84829618-84829803) | |
| 614-778, gnl|rn3|chr1 (146443064-146442877) | |
| 614-778, gnl|tetNig1|chr2 (9257441-9257272) | |
| 614-778, gnl|xenTro1|scaffold_195 (1417028-1416851) | |
| 878-992, gnl|bosTau2|chr29 (5540817-5540703) | |
| 878-992, gnl|canFam2|chr21 (16081396-16081227) | |
| 878-992, gnl|danRer3|chr9 (31103473-31103642) | |
| 878-992, gnl|dasNov1|scaffold_48829 (6500-6337) | |
| 878-992, gnl|echTel1|scaffold_303702 (8528-8697) | |
| 878-992, gnl|fr1|chrUn (203910311-203910443) | |
| 878-992, gnl|hg17|chr11 (85853751-85853921) | |
| 878-992, gnl|Hg17|chr11 (85853894-85853780) | |
| 878-992, gnl|loxAfr1|scaffold_19204 (43540-43370) | |
| 878-992, gnl|mm7|chr7 (85782232-85782060) | |
| 878-992, gnl|Mm7|chr7 (85782092-85782206) | |
| 878-992, gnl|monDom2|scaffold_46 (1125452-1125304) | |
| 878-992, gnl|oryCun1|scaffold_186983 (8506-8673) | |
| 878-992, gnl|panTro1|chr9 (87507271-87507441) | |
| 878-992, gnl|rheMac2|chr14 (84790128-84790297) | |
| 878-992, gnl|rn3|chr1 (146476089-146475915) | |
| 878-992, gnl|tetNig1|chr2 (9257811-9257666) | |
| 878-992, gnl|xenTro1|scaffold_195 (1429859-1429706) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-256, gnl|bosTau2|chr29 (5735034-5734804) | |
| 26-256, gnl|Hg17|chr11 (86060681-86060451) | |
| 26-256, gnl|Mm7|chr7 (85569726-85569957) | |
| 390-539, gnl|bosTau2|chr29 (5630024-5629875) | |
| 390-539, gnl|canFam2|chr21 (16003860-16003704) | |
| 390-539, gnl|danRer3|chr9 (31105908-31106064) | |
| 390-539, gnl|dasNov1|scaffold_7839 (78846-78690) | |
| 390-539, gnl|echTel1|scaffold_263334 (4827-4983) | |
| 390-539, gnl|fr1|chrUn (203911139-203911295) | |
| 390-539, gnl|galGal2|chr1 (180620273-180620117) | |
| 390-539, gnl|hg17|chr11 (85945239-85945395) | |
| 390-539, gnl|Hg17|chr11 (85945392-85945243) | |
| 390-539, gnl|loxAfr1|scaffold_77680 (1080-1236) | |
| 390-539, gnl|mm7|chr7 (85676535-85676379) | |
| 390-539, gnl|Mm7|chr7 (85676380-85676529) | |
| 390-539, gnl|monDom2|scaffold_46 (1004166-1004010) | |
| 390-539, gnl|oryCun1|scaffold_211779 (110270-110114) | |
| 390-539, gnl|panTro1|chr9 (87783021-87783177) | |
| 390-539, gnl|rheMac2|chr14 (84883414-84883570) | |
| 390-539, gnl|rn3|chr1 (146396114-146395958) | |
| 390-539, gnl|tetNig1|chr2 (9257016-9256860) | |
| 390-539, gnl|xenTro1|scaffold_195 (1397771-1397615) | |
| 614-778, gnl|bosTau2|chr29 (5580534-5580370) | |
| 614-778, gnl|canFam2|chr21 (16048328-16048156) | |
| 614-778, gnl|danRer3|chr9 (31105415-31105582) | |
| 614-778, gnl|dasNov1|scaffold_29336 (699-512) | |
| 614-778, gnl|echTel1|scaffold_272587 (1279-1467) | |
| 614-778, gnl|fr1|chrUn (203910718-203910887) | |
| 614-778, gnl|galGal2|chr3 (76169835-76169645) | |
| 614-778, gnl|hg17|chr11 (85886650-85886835) | |
| 614-778, gnl|Hg17|chr11 (85886816-85886652) | |
| 614-778, gnl|loxAfr1|scaffold_97549 (4451-4639) | |
| 614-778, gnl|mm7|chr7 (85745176-85744989) | |
| 614-778, gnl|Mm7|chr7 (85745008-85745172) | |
| 614-778, gnl|monDom2|scaffold_46 (1064056-1063871) | |
| 614-778, gnl|oryCun1|scaffold_211779 (155057-154870) | |
| 614-778, gnl|panTro1|chr9 (87543779-87543964) | |
| 614-778, gnl|rheMac2|chr14 (84829618-84829803) | |
| 614-778, gnl|rn3|chr1 (146443064-146442877) | |
| 614-778, gnl|tetNig1|chr2 (9257441-9257272) | |
| 614-778, gnl|xenTro1|scaffold_195 (1417028-1416851) | |
| 878-992, gnl|bosTau2|chr29 (5540817-5540703) | |
| 878-992, gnl|canFam2|chr21 (16081396-16081227) | |
| 878-992, gnl|danRer3|chr9 (31103473-31103642) | |
| 878-992, gnl|dasNov1|scaffold_48829 (6500-6337) | |
| 878-992, gnl|echTel1|scaffold_303702 (8528-8697) | |
| 878-992, gnl|fr1|chrUn (203910311-203910443) | |
| 878-992, gnl|hg17|chr11 (85853751-85853921) | |
| 878-992, gnl|Hg17|chr11 (85853894-85853780) | |
| 878-992, gnl|loxAfr1|scaffold_19204 (43540-43370) | |
| 878-992, gnl|mm7|chr7 (85782232-85782060) | |
| 878-992, gnl|Mm7|chr7 (85782092-85782206) | |
| 878-992, gnl|monDom2|scaffold_46 (1125452-1125304) | |
| 878-992, gnl|oryCun1|scaffold_186983 (8506-8673) | |
| 878-992, gnl|panTro1|chr9 (87507271-87507441) | |
| 878-992, gnl|rheMac2|chr14 (84790128-84790297) | |
| 878-992, gnl|rn3|chr1 (146476089-146475915) | |
| 878-992, gnl|tetNig1|chr2 (9257811-9257666) | |
| 878-992, gnl|xenTro1|scaffold_195 (1429859-1429706) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| pla (0.133672) | |
| jca (0.11396) |