Non-Coding RNA Search

Ss1.1-Thy1-THY010048B09.5

Sequence:


               
               ATGGATCCAGCAGGACAGCTCAGCCCAGAGAGTTGATAGCTCCGCCCAAGACCATCAAAC
CCCCTGAGGATCATCTGAAGCCTGAAAACCTCGAGGTGTCCAGTTCCTTCAATTATAATG
TGCTGCAGCACCTCGGCCAGTTCCCCCCACTCATGCCCAACAAGCAGATTGCGGAGTCCG
TCAACAGCAGCAGCCAGCAGAGCTCTGGAGGCAGCAAGCCCACCATGTCCTACGCCAGCG
CTCTGCGGGCTCCCCCCAAGCCCAGGCCCCCGCCAGAGCAGGCCAAGAAGAGCAGCGACC
CTCTGTCTCTGTTCCAGGAACTCAGCCTGGGGAGCTCATCGGGCAGCAATGGCTTTTACT
CCTATTTTAAATAATCACTTTTTTTTCCTCCAAGGGAGAATGTTTTAATTTCTGTTTGTA
TCAATAGAATTAAGATAGCTGGACTTCACCTATAGATGCACAGTTCCCTTTGTTTTAATA
TTAAATATGTTTTCACTTAATTGCTTTGCTGCTAGACTTGCAACTAATTTTTTTAAAGTA
TATTCCATTATTTTGCATTTTTGATGTCAGTCGGAATTTTGACAGCTTTTATGTAGAATA
AAAAAATATTTTTAAATTTGTGTATTGTTACATATGTTTGCATCAAGCTAGCAGCTAAGA
GGTTAATTGTGCAACTATTAAAAAAAGAGAAAAAAAGTTTGTCTAAAATGTATTTAAAAA
GAAAAAAAATTGTAAGTAGCATTTACATTTATTCAATAATATTACCATATGCTGGGTTTC
TGTACCAGAAATGGCCAGTTGATGTACAAATGTATGTTATTTTTGCTTAAATTCATTTAA
AATTTTTTAAAATAAAGGGGCAGCATCTTCTAAATACTTTTAAGTTTTATCAGCTTTTTT
TTTTTTTGGTGACAAGATGCTGCATTCTAAAACTTTTATAGTTTTAGACTACGTATGATG
TGCTGTTGTAATCTCCATCCACTGTAGGATAGAGTTAAAGGCATTCTTTGCAGGTGTATT
TTGTATGCCATTGTTTTTTGTAACGTGAAAAAAAACATTGGCATACGTAGTTATTTTTTT
GGACAAGCTGTACTTCAAGCTTGTTTTTAATGTTAATTTGGTAGTGTGTGTGTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGATCCAGCAGGACAGCTCAGCCCAGAGAGTTGATAGCTCCGCCCAAGACCATCAAAC
CCCCTGAGGATCATCTGAAGCCTGAAAACCTCGAGGTGTCCAGTTCCTTCAATTATAATG
TGCTGCAGCACCTCGGCCAGTTCCCCCCACTCATGCCCAACAAGCAGATTGCGGAGTCCG
TCAACAGCAGCAGCCAGCAGAGCTCTGGAGGCAGCAAGCCCACCATGTCCTACGCCAGCG
CTCTGCGGGCTCCCCCCAAGCCCAGGCCCCCGCCAGAGCAGGCCAAGAAGAGCAGCGACC
CTCTGTCTCTGTTCCAGGAACTCAGCCTGGGGAGCTCATCGGGCAGCAATGGCTTTTACT
CCTATTTTAAATAATCACTTTTTTTTCCTCCAAGGGAGAATGTTTTAATTTCTGTTTGTA
TCAATAGAATTAAGATAGCTGGACTTCACCTATAGATGCACAGTTCCCTTTGTTTTAATA
TTAAATATGTTTTCACTTAATTGCTTTGCTGCTAGACTTGCAACTAATTTTTTTAAAGTA
TATTCCATTATTTTGCATTTTTGATGTCAGTCGGAATTTTGACAGCTTTTATGTAGAATA
AAAAAATATTTTTAAATTTGTGTATTGTTACATATGTTTGCATCAAGCTAGCAGCTAAGA
GGTTAATTGTGCAACTATTAAAAAAAGAGAAAAAAAGTTTGTCTAAAATGTATTTAAAAA
GAAAAAAAATTGTAAGTAGCATTTACATTTATTCAATAATATTACCATATGCTGGGTTTC
TGTACCAGAAATGGCCAGTTGATGTACAAATGTATGTTATTTTTGCTTAAATTCATTTAA
AATTTTTTAAAATAAAGGGGCAGCATCTTCTAAATACTTTTAAGTTTTATCAGCTTTTTT
TTTTTTTGGTGACAAGATGCTGCATTCTAAAACTTTTATAGTTTTAGACTACGTATGATG
TGCTGTTGTAATCTCCATCCACTGTAGGATAGAGTTAAAGGCATTCTTTGCAGGTGTATT
TTGTATGCCATTGTTTTTTGTAACGTGAAAAAAAACATTGGCATACGTAGTTATTTTTTT
GGACAAGCTGTACTTCAAGCTTGTTTTTAATGTTAATTTGGTAGTGTGTGTGTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8VDI3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VDI3_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               555-674, + strand, RNAz p=0.942832
               

               
               904-1022, - strand, RNAz p=0.997495

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-674, + strand, RNAz p=0.942832
               

               
               904-1022, - strand, RNAz p=0.997495

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014877, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014877, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-1138, gnl|bosTau2|chr19 (50542290-50541205)
               

               
               37-1138, gnl|Hg17|chr17 (62505167-62504066)
               

               
               37-1138, gnl|Mm7|chr11 (107795423-107796528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-1138, gnl|bosTau2|chr19 (50542290-50541205)
               

               
               37-1138, gnl|Hg17|chr17 (62505167-62504066)
               

               
               37-1138, gnl|Mm7|chr11 (107795423-107796528)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lun (0.150489)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	555-674, + strand, RNAz p=0.942832
	904-1022, - strand, RNAz p=0.997495

	37-1138, gnl\|bosTau2\|chr19 (50542290-50541205)
	37-1138, gnl\|Hg17\|chr17 (62505167-62504066)
	37-1138, gnl\|Mm7\|chr11 (107795423-107796528)

	lun (0.150489)
	spl (0.143184)
	che (0.136314)
	ebs (0.118301)
	ldo (0.0970026)