Non-Coding RNA Search

Ss1.1-Thy1-THY010048D06.5

Sequence:


               
               GGAGATGGGTCTTATCTTACGGGTTCCCAAGCCTATGGGTTCCCATTATCAGTATCACCT
TCTTCCCCAGGGTATACTGCAGACCTCCAGATGTTGGTCTGTGGGATTCGGCAGAGGATG
AGTTTTCTATCCTCCTCTCAACTGTAAGCTACTCTTCCCAACTGTTCTCCCGCTGTCCAC
TGTCATCATGTCTACCTTACTCCTCAATCTGGATTTTGGTGAACCTCCCCCAAAAAAGGC
ATTAGAGGGGAATGCCAAGCACCGAAAATTTGTCAAGAAGCGCCGGCTCTTGGAACGGAA
GGGCTTTTTGAATAAGAAACAGCAGCCCCCTAGCAAGGTGGCTAAGTTGCAATCAGAATC
GTCAAAGAAAGGGAAATCTCCCAAGGTAGATGGCGCTTGGAAGGCCCCTCTTCTTTCAAA
AAAGAAGACAGCTGCCTCCAGCGGGGGTCAGGGCAGTCTCTGGACAAGCCATCTGCAGTG
CCTTGGCTGACCCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCCAAAGTAGACTTA
CTGGGGGAGTTCCAGAGTGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCGGAAG
AAGGGCTCCCAGAAGAATGCCCCACAGAATTCCACCCAAGCTCATTCCGAGAAGAAATAT
TCTGGAGCATCCCAGAAGGGTCCGAGCAAGATGGTGGCAATTGACTGTGAGATGGTGGGC
ACAGGACCCAAAGGGCATGTCAGTTCCTTGGCTCGGTGTAGTATTGTCAACTACAATGGA
GATGTGCTTTATGACGAGTACATCCTTCCCCCCTGCCACATTGTGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATGGGTCTTATCTTACGGGTTCCCAAGCCTATGGGTTCCCATTATCAGTATCACCT
TCTTCCCCAGGGTATACTGCAGACCTCCAGATGTTGGTCTGTGGGATTCGGCAGAGGATG
AGTTTTCTATCCTCCTCTCAACTGTAAGCTACTCTTCCCAACTGTTCTCCCGCTGTCCAC
TGTCATCATGTCTACCTTACTCCTCAATCTGGATTTTGGTGAACCTCCCCCAAAAAAGGC
ATTAGAGGGGAATGCCAAGCACCGAAAATTTGTCAAGAAGCGCCGGCTCTTGGAACGGAA
GGGCTTTTTGAATAAGAAACAGCAGCCCCCTAGCAAGGTGGCTAAGTTGCAATCAGAATC
GTCAAAGAAAGGGAAATCTCCCAAGGTAGATGGCGCTTGGAAGGCCCCTCTTCTTTCAAA
AAAGAAGACAGCTGCCTCCAGCGGGGGTCAGGGCAGTCTCTGGACAAGCCATCTGCAGTG
CCTTGGCTGACCCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCCAAAGTAGACTTA
CTGGGGGAGTTCCAGAGTGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCGGAAG
AAGGGCTCCCAGAAGAATGCCCCACAGAATTCCACCCAAGCTCATTCCGAGAAGAAATAT
TCTGGAGCATCCCAGAAGGGTCCGAGCAAGATGGTGGCAATTGACTGTGAGATGGTGGGC
ACAGGACCCAAAGGGCATGTCAGTTCCTTGGCTCGGTGTAGTATTGTCAACTACAATGGA
GATGTGCTTTATGACGAGTACATCCTTCCCCCCTGCCACATTGTGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61829311|ref|XP_594097.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61829311|ref|XP_594097.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-484, + strand, RNAz p=0.601186

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-484, + strand, RNAz p=0.601186

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-828, gnl|bosTau2|chr3 (11068923-11068095)
               

               
               15-828, gnl|Hg17|chr1 (153510695-153509846)
               

               
               15-828, gnl|Mm7|chr3 (88045116-88046001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-828, gnl|bosTau2|chr3 (11068923-11068095)
               

               
               15-828, gnl|Hg17|chr1 (153510695-153509846)
               

               
               15-828, gnl|Mm7|chr3 (88045116-88046001)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               jca (0.11396)

	15-828, gnl\|bosTau2\|chr3 (11068923-11068095)
	15-828, gnl\|Hg17\|chr1 (153510695-153509846)
	15-828, gnl\|Mm7\|chr3 (88045116-88046001)