Non-Coding RNA Search

Ss1.1-Thy1-THY010048F11.5

Sequence:


               
               GAATTCATCGAGAGTTTACAGCTGAAGCCCGGGCAGGTGGTGTACAAGTGTCCCAAATGC
TGCAGCATCAAGCCTGACCGAGCCCACCACTGCAGTGTTTGTAAGCGGTGCATTCGGAAG
ATGGACCATCACTGTCCCTGGGTCAATAACTGTGTTGGCGAGAACAACCAGAAGTACTTC
GTCCTGTTTACAATGTACATAGCTCTCATTTCCTTGCACGCCCTCATCATGGTGGGATTC
CACTTCCTGCATTGCTTTGAAGAAGATTGGACAAAGTGCAGCTCCTTCTCACCGCCCACC
ACGGTGATCCTCCTCATCCTCCTGTGCTTCGAGGGACTGCTCTTCCTCATTTTCACATCG
GTGATGTTTGGGACCCAGGTGCACTCCATCTGCACAGATGAGACGGGAATAGAACAATTG
AAAAAGGAAGAGAGAAGATGGGCTAAAAAAACAAAATGGATGAACATGAAAGCCGTTTTT
GGCCACCCCTTCTCTCTAGGCTGGGCCAGCCCCTTTGCCACGCCAGACCAAGGGAAGGCA
GACCCTTACCAGTATGTGGTCTGAAGGACCCCTGACCAGCATTGACCCAGACACAAACCA
CATCCCAGCACTACCGTTCGATCCGTTCTCATGAATGTTTAAACCGAAAAGGCAAAACAA
CTAAAACTTTTTTAACGTCTCAAGTAAAATGGCTGATCATTGCAGAGAAAAAAAAAAATG
TCCCCATGTTTTATTTTTAAAAGATCATCCTTTCTATTTTTTGGTGACCGAAGCTGCTTT
TCCTTTTTCCTTTTTAAAATCACTTCTCTGGTTTCCTCTCTGCTGTCTGTCTGGCATGAC
TAATGTGGAGGGCACTGTCTCCGGGCCACGTCCCCTTGTACTAACTGAGTCATTACACTT
GTGCGTGGATGGACCGGCCTGGACGCCTGGTTGGGACGCATAGGAGAGCCAGGAGGACCC
ATGACTTCCCACTGCCCAGGAGGCAGTGGCAGGCGCCCCATGGGACCTAAAACCTCACTG
AAGATGGATGCTTACCCCTTGTGTCCTGAGAGGGCCAGGATCGGGGCTGGAGCCCTAAGA
AGGATCCTTGTCACAGCAGCCTCATCCCCTGTGTGTGAGCACAGTTTGCCTCCTAATTCA
CAAAATTGATTGCCTGCCTGGTACTTTATGGGCTTGGAGGGTGTAGGATGACTTTGGGGG
TGGAGTGCAGAGATGAAAGGGGTCTTATTTGTATTCCGAATCACCAGTTATATTTCAACT
CTGATTATTTGGAAGAATGTGAAGGAAAGAAGTTTTTTCCAGTTCAAAATGCCTTACACA
ATCAAAAGAGGAAGAAAATTACGCGGTTTCAGGCAAGCTCCATTTGCCTTGGTGACATCT
GCTTAAGTTCTGGCCGCCCCGCCTCCCGCCCTCTCCATGTGATGTCGGTTAAGCAGGGAA
ACAGCCACGGCCCCACCATCGACCCCTCCTTCCTCATTTCATAAACCTCTGCAGCGGGTT
CAGTTTCTGATGCCTTCACCCCATAGATGTGCATGTACCCATGTCTGGTCTGTATTTTAA
CCTGGGAGACTGCTGTCCTGGCGTCAGCTGATTGTGATGCAAGGGCAGCGTTACAGCCCC
CAAACTTTTTAAAGTTGAGAGACAGCCATCCCACTGGAGTCAACAGACACACCTCAGCCT
GCGGCGCCAAGACTGAAATGACTAGCTTTTCCACTTGGCACACTTGTGTATTGAGTCTCA
TTTGAAGGAGGAAAGGCCTGAAAACAGTAGGGGAGGTGAGGGGATGGGGAGTGAGTGTGA
AATGCAGAAGTCACAGAAATCTGAATACTGACCATCTCACACGTGGATTTGTTTTTTAAG
TGATGACCACAAACATTTTTTTAATCTATTGCCTGGGGTAGGGTGGGGGTGAGGCTTATT
AAATCAGCCCAGGGTGGGGAGAGAGTTCATCTAGCCATGTGATCTTTCAGAAAAAGTGGA
ACATGCAGCCTCTTTTCACTTCTGTCAGTGCTTCCACCTGGAAACAAAATGCAATAAAAT
TTTTCCAAAACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCATCGAGAGTTTACAGCTGAAGCCCGGGCAGGTGGTGTACAAGTGTCCCAAATGC
TGCAGCATCAAGCCTGACCGAGCCCACCACTGCAGTGTTTGTAAGCGGTGCATTCGGAAG
ATGGACCATCACTGTCCCTGGGTCAATAACTGTGTTGGCGAGAACAACCAGAAGTACTTC
GTCCTGTTTACAATGTACATAGCTCTCATTTCCTTGCACGCCCTCATCATGGTGGGATTC
CACTTCCTGCATTGCTTTGAAGAAGATTGGACAAAGTGCAGCTCCTTCTCACCGCCCACC
ACGGTGATCCTCCTCATCCTCCTGTGCTTCGAGGGACTGCTCTTCCTCATTTTCACATCG
GTGATGTTTGGGACCCAGGTGCACTCCATCTGCACAGATGAGACGGGAATAGAACAATTG
AAAAAGGAAGAGAGAAGATGGGCTAAAAAAACAAAATGGATGAACATGAAAGCCGTTTTT
GGCCACCCCTTCTCTCTAGGCTGGGCCAGCCCCTTTGCCACGCCAGACCAAGGGAAGGCA
GACCCTTACCAGTATGTGGTCTGAAGGACCCCTGACCAGCATTGACCCAGACACAAACCA
CATCCCAGCACTACCGTTCGATCCGTTCTCATGAATGTTTAAACCGAAAAGGCAAAACAA
CTAAAACTTTTTTAACGTCTCAAGTAAAATGGCTGATCATTGCAGAGAAAAAAAAAAATG
TCCCCATGTTTTATTTTTAAAAGATCATCCTTTCTATTTTTTGGTGACCGAAGCTGCTTT
TCCTTTTTCCTTTTTAAAATCACTTCTCTGGTTTCCTCTCTGCTGTCTGTCTGGCATGAC
TAATGTGGAGGGCACTGTCTCCGGGCCACGTCCCCTTGTACTAACTGAGTCATTACACTT
GTGCGTGGATGGACCGGCCTGGACGCCTGGTTGGGACGCATAGGAGAGCCAGGAGGACCC
ATGACTTCCCACTGCCCAGGAGGCAGTGGCAGGCGCCCCATGGGACCTAAAACCTCACTG
AAGATGGATGCTTACCCCTTGTGTCCTGAGAGGGCCAGGATCGGGGCTGGAGCCCTAAGA
AGGATCCTTGTCACAGCAGCCTCATCCCCTGTGTGTGAGCACAGTTTGCCTCCTAATTCA
CAAAATTGATTGCCTGCCTGGTACTTTATGGGCTTGGAGGGTGTAGGATGACTTTGGGGG
TGGAGTGCAGAGATGAAAGGGGTCTTATTTGTATTCCGAATCACCAGTTATATTTCAACT
CTGATTATTTGGAAGAATGTGAAGGAAAGAAGTTTTTTCCAGTTCAAAATGCCTTACACA
ATCAAAAGAGGAAGAAAATTACGCGGTTTCAGGCAAGCTCCATTTGCCTTGGTGACATCT
GCTTAAGTTCTGGCCGCCCCGCCTCCCGCCCTCTCCATGTGATGTCGGTTAAGCAGGGAA
ACAGCCACGGCCCCACCATCGACCCCTCCTTCCTCATTTCATAAACCTCTGCAGCGGGTT
CAGTTTCTGATGCCTTCACCCCATAGATGTGCATGTACCCATGTCTGGTCTGTATTTTAA
CCTGGGAGACTGCTGTCCTGGCGTCAGCTGATTGTGATGCAAGGGCAGCGTTACAGCCCC
CAAACTTTTTAAAGTTGAGAGACAGCCATCCCACTGGAGTCAACAGACACACCTCAGCCT
GCGGCGCCAAGACTGAAATGACTAGCTTTTCCACTTGGCACACTTGTGTATTGAGTCTCA
TTTGAAGGAGGAAAGGCCTGAAAACAGTAGGGGAGGTGAGGGGATGGGGAGTGAGTGTGA
AATGCAGAAGTCACAGAAATCTGAATACTGACCATCTCACACGTGGATTTGTTTTTTAAG
TGATGACCACAAACATTTTTTTAATCTATTGCCTGGGGTAGGGTGGGGGTGAGGCTTATT
AAATCAGCCCAGGGTGGGGAGAGAGTTCATCTAGCCATGTGATCTTTCAGAAAAAGTGGA
ACATGCAGCCTCTTTTCACTTCTGTCAGTGCTTCCACCTGGAAACAAAATGCAATAAAAT
TTTTCCAAAACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61883363|ref|XP_590629.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883363|ref|XP_590629.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-761, gnl|bosTau2|chr25 (13963652-13962893)
               

               
               1-761, gnl|Hg17|chr5 (97099689-97100604)
               

               
               1-761, gnl|Mm7|chr9 (122794524-122783364)
               


               
               272-406, gnl|bosTau2|chr18 (11772177-11772311)
               

               
               272-406, gnl|Hg17|chr16 (83568335-83568201)
               

               
               272-406, gnl|Mm7|chr9 (122785882-122785748)
               


               
               1001-2049, gnl|bosTau2|chr25 (13958436-13957375)
               

               
               1001-2049, gnl|Hg17|chr5 (97100836-97101916)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-761, gnl|bosTau2|chr25 (13963652-13962893)
               

               
               1-761, gnl|Hg17|chr5 (97099689-97100604)
               

               
               1-761, gnl|Mm7|chr9 (122794524-122783364)
               


               
               272-406, gnl|bosTau2|chr18 (11772177-11772311)
               

               
               272-406, gnl|Hg17|chr16 (83568335-83568201)
               

               
               272-406, gnl|Mm7|chr9 (122785882-122785748)
               


               
               1001-2049, gnl|bosTau2|chr25 (13958436-13957375)
               

               
               1001-2049, gnl|Hg17|chr5 (97100836-97101916)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ebs (0.354904)
               

               
               ese (0.253004)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               ese (0.253004)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-761, gnl\|bosTau2\|chr25 (13963652-13962893)
	1-761, gnl\|Hg17\|chr5 (97099689-97100604)
	1-761, gnl\|Mm7\|chr9 (122794524-122783364)

	272-406, gnl\|bosTau2\|chr18 (11772177-11772311)
	272-406, gnl\|Hg17\|chr16 (83568335-83568201)
	272-406, gnl\|Mm7\|chr9 (122785882-122785748)

	1001-2049, gnl\|bosTau2\|chr25 (13958436-13957375)
	1001-2049, gnl\|Hg17\|chr5 (97100836-97101916)

	ebs (0.354904)
	ese (0.253004)
	sto (0.179824)
	cje (0.165235)
	nco (0.161734)
	lnt (0.142308)
	csk (0.140746)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)