Non-Coding RNA Search

Ss1.1-Thy1-THY010048H10.5

Sequence:


               
               AGCACACTGAGACTGGCAGCTGCTCCAACCCCATCCCTCCTTAGAGATGCCACCTCCCCC
ACCACCCACCCCTAATTTGTGCCTTGCCTCCCCACCCTGGAGTAGTCCCTCCGGGTCACC
AGCACTGCCTTGGCAGAGCCCACTCCCTACCCTAACCTGCCCACCCTCCCTACCCCCCAG
CATTAGGTTGATACTGTGGGGAAGTGCTGGGGGTTGGGAGGTAGCCGAGGAATGGGGCAG
TTCCCGGGGGCATTGAAACCAAGTATTATTATGAATTGTAATTGTATTTGCACTGTTTTT
TTTTTTTTTTTCCTCTGATTGCATCAGCATATATACAATATACCTATATAACAAAATTCA
GTGTCAAGCTTTCTTATGCAAGGGATTTCCCCCACCCCACCCCCCAAAATAGAACGTAGT
TTCATGGGCCTTTGAGGGTGGATTGCTTCAGGGGATGATAGAAATGATTTTAACAAGTCA
TCCTAAGAAAGTCTCCCCTAGGGAGAACCACATCCATCTGTACACAGTTTTAGGCTTTGT
AAATTAGGATGAGGCTGGGTTACTGTGAACGCTCAGGCTCTTAGCCCAGACTGTGGAGAA
TAAAGAACCACAGCACAAAAGGGGTGGAGTGGTGGCACAGTCTGGAGACTTGGGGTCTAT
TCCCAAGCTTTCCTACTAACTTGCTATGTGACCTTTGGTGGAGTTGATTTTCTGGGTCTC
AGTTTTCTTATTTGTAAAGTGATGCAGGCAGTGGGAGCTCATCTGGCCACCGAGTTTAAA
ATTCTGTTCTCTGCTTCCTTCCCTACCTACGAAACAAAACAACTTGAGGTGAGGAAAGTG
TTGGGCTGAAAACCCAGGGAGGAAACCAAAGTGGCTAGTGGGTACATGCCAGGCCTCTGC
TGTTTGTTTTGGTTTGGGAAAGGCAGCTGAGTGATATTTAGGACATCCGTTAAACTTGTG
ACATCTTTGCCCTCATGCCTCTAGTCATCCAAGGCAGGGTCCAGGCCCGAAGCCTCACCT
CACAAGCAGCTGCCCTTAAGGGTGGTTGACCAGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACACTGAGACTGGCAGCTGCTCCAACCCCATCCCTCCTTAGAGATGCCACCTCCCCC
ACCACCCACCCCTAATTTGTGCCTTGCCTCCCCACCCTGGAGTAGTCCCTCCGGGTCACC
AGCACTGCCTTGGCAGAGCCCACTCCCTACCCTAACCTGCCCACCCTCCCTACCCCCCAG
CATTAGGTTGATACTGTGGGGAAGTGCTGGGGGTTGGGAGGTAGCCGAGGAATGGGGCAG
TTCCCGGGGGCATTGAAACCAAGTATTATTATGAATTGTAATTGTATTTGCACTGTTTTT
TTTTTTTTTTTCCTCTGATTGCATCAGCATATATACAATATACCTATATAACAAAATTCA
GTGTCAAGCTTTCTTATGCAAGGGATTTCCCCCACCCCACCCCCCAAAATAGAACGTAGT
TTCATGGGCCTTTGAGGGTGGATTGCTTCAGGGGATGATAGAAATGATTTTAACAAGTCA
TCCTAAGAAAGTCTCCCCTAGGGAGAACCACATCCATCTGTACACAGTTTTAGGCTTTGT
AAATTAGGATGAGGCTGGGTTACTGTGAACGCTCAGGCTCTTAGCCCAGACTGTGGAGAA
TAAAGAACCACAGCACAAAAGGGGTGGAGTGGTGGCACAGTCTGGAGACTTGGGGTCTAT
TCCCAAGCTTTCCTACTAACTTGCTATGTGACCTTTGGTGGAGTTGATTTTCTGGGTCTC
AGTTTTCTTATTTGTAAAGTGATGCAGGCAGTGGGAGCTCATCTGGCCACCGAGTTTAAA
ATTCTGTTCTCTGCTTCCTTCCCTACCTACGAAACAAAACAACTTGAGGTGAGGAAAGTG
TTGGGCTGAAAACCCAGGGAGGAAACCAAAGTGGCTAGTGGGTACATGCCAGGCCTCTGC
TGTTTGTTTTGGTTTGGGAAAGGCAGCTGAGTGATATTTAGGACATCCGTTAAACTTGTG
ACATCTTTGCCCTCATGCCTCTAGTCATCCAAGGCAGGGTCCAGGCCCGAAGCCTCACCT
CACAAGCAGCTGCCCTTAAGGGTGGTTGACCAGCGA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               82-398, - strand, RNAz p=0.987429
               

               
               434-665, - strand, RNAz p=0.628946
               

               
               763-880, - strand, RNAz p=0.991576
               

               
               887-999, + strand, RNAz p=0.928127

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-398, - strand, RNAz p=0.987429
               

               
               434-665, - strand, RNAz p=0.628946
               

               
               763-880, - strand, RNAz p=0.991576
               

               
               887-999, + strand, RNAz p=0.928127

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               135-380, - strand, RNAmicro p=0.999971
               

               
               144-241, + strand, RNAmicro p=0.992299

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               135-380, - strand, RNAmicro p=0.999971
               

               
               144-241, + strand, RNAmicro p=0.992299

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               82-880, gnl|bosTau2|chr3 (8028584-8027814)
               

               
               82-880, gnl|Hg17|chr1 (150591915-150591147)
               

               
               82-880, gnl|Mm7|chr3 (90492554-90493263)
               


               
               887-1052, gnl|bosTau2|chr3 (8027775-8027610)
               

               
               887-1052, gnl|canFam2|chr7 (46272031-46271527)
               

               
               887-1052, gnl|dasNov1|scaffold_53081 (11358-11992)
               

               
               887-1052, gnl|echTel1|scaffold_310951 (42715-42136)
               

               
               887-1052, gnl|hg17|chr1 (150590570-150591217)
               

               
               887-1052, gnl|Hg17|chr1 (150591108-150590941)
               

               
               887-1052, gnl|loxAfr1|scaffold_142827 (1120-491)
               

               
               887-1052, gnl|mm7|chr3 (90493822-90493197)
               

               
               887-1052, gnl|Mm7|chr3 (90493300-90493447)
               

               
               887-1052, gnl|monDom2|scaffold_59 (4264776-4264189)
               

               
               887-1052, gnl|oryCun1|scaffold_175360 (1483-885)
               

               
               887-1052, gnl|panTro1|chr1 (132570406-132571053)
               

               
               887-1052, gnl|rheMac2|chr1 (132320754-132321399)
               

               
               887-1052, gnl|rn3|chr2 (182570492-182569889)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-880, gnl|bosTau2|chr3 (8028584-8027814)
               

               
               82-880, gnl|Hg17|chr1 (150591915-150591147)
               

               
               82-880, gnl|Mm7|chr3 (90492554-90493263)
               


               
               887-1052, gnl|bosTau2|chr3 (8027775-8027610)
               

               
               887-1052, gnl|canFam2|chr7 (46272031-46271527)
               

               
               887-1052, gnl|dasNov1|scaffold_53081 (11358-11992)
               

               
               887-1052, gnl|echTel1|scaffold_310951 (42715-42136)
               

               
               887-1052, gnl|hg17|chr1 (150590570-150591217)
               

               
               887-1052, gnl|Hg17|chr1 (150591108-150590941)
               

               
               887-1052, gnl|loxAfr1|scaffold_142827 (1120-491)
               

               
               887-1052, gnl|mm7|chr3 (90493822-90493197)
               

               
               887-1052, gnl|Mm7|chr3 (90493300-90493447)
               

               
               887-1052, gnl|monDom2|scaffold_59 (4264776-4264189)
               

               
               887-1052, gnl|oryCun1|scaffold_175360 (1483-885)
               

               
               887-1052, gnl|panTro1|chr1 (132570406-132571053)
               

               
               887-1052, gnl|rheMac2|chr1 (132320754-132321399)
               

               
               887-1052, gnl|rn3|chr2 (182570492-182569889)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               eye (0.170503)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	82-398, - strand, RNAz p=0.987429
	434-665, - strand, RNAz p=0.628946
	763-880, - strand, RNAz p=0.991576
	887-999, + strand, RNAz p=0.928127

	135-380, - strand, RNAmicro p=0.999971
	144-241, + strand, RNAmicro p=0.992299

	82-880, gnl\|bosTau2\|chr3 (8028584-8027814)
	82-880, gnl\|Hg17\|chr1 (150591915-150591147)
	82-880, gnl\|Mm7\|chr3 (90492554-90493263)

	887-1052, gnl\|bosTau2\|chr3 (8027775-8027610)
	887-1052, gnl\|canFam2\|chr7 (46272031-46271527)
	887-1052, gnl\|dasNov1\|scaffold_53081 (11358-11992)
	887-1052, gnl\|echTel1\|scaffold_310951 (42715-42136)
	887-1052, gnl\|hg17\|chr1 (150590570-150591217)
	887-1052, gnl\|Hg17\|chr1 (150591108-150590941)
	887-1052, gnl\|loxAfr1\|scaffold_142827 (1120-491)
	887-1052, gnl\|mm7\|chr3 (90493822-90493197)
	887-1052, gnl\|Mm7\|chr3 (90493300-90493447)
	887-1052, gnl\|monDom2\|scaffold_59 (4264776-4264189)
	887-1052, gnl\|oryCun1\|scaffold_175360 (1483-885)
	887-1052, gnl\|panTro1\|chr1 (132570406-132571053)
	887-1052, gnl\|rheMac2\|chr1 (132320754-132321399)
	887-1052, gnl\|rn3\|chr2 (182570492-182569889)