Non-Coding RNA Search

Ss1.1-Thy1-THY010049E02.5

Sequence:


               
               TCCCTCCCCCAAATCTCAGAATGGGTTAGAATGATCTAGAATAACTATTTATTCTTGGGG
CCGGTCCAGACCTAATGAATCAGAACCCAGGAACTTGCATTTTTGCAGGTGCTACACCAG
TGTTTGAGTTACTGGCCAAGTGGAATCAGATAAGGCTGCCAAGTGAGGCTGAGCCAAGAT
ATGTCATTCAGCTACGCAAGAAGAATCTGGCAGATCCATCTAGGCAGGAACAAAGATCCA
GATTTTGGGCAGTGAGAATCTGTGAGCTTAATTAACTCCAGTGTACATGATGGATCTCTC
CCTGTGCAGAGGTTCTGAGTTTTCTGCCCTGTTTAGTTCTCTTCTCTCCCTGTCCTAGTT
CTCAGCTGCAAGGAGACCTGAAGGTAAAATGTGTTCCAGGTTTGGGAAGGTGATGGTACT
AGGACCTTGCTACTCAAGTGTGGTTTGCAAATCAGCAGCAACATCACAGCTTTGAAACTT
GTTAGAAATGCAGAAGTTTGGGCTCTACCCCTGACCTGTTAAATCTGAATCTATTTCATC
AAAGTCTTCAGGTGATTCATATTACTTTGTAGTTTGAGAAGCATTGTACCGAGATGACCA
TGCTGTCCTCATGTCAGTGAGAAGTAGAATGATGATTCTGTGATCGTAGAATTGACAGTG
AGTGTGACTGATGTTTTCTGACAAGGGATCTCTGCTTATAAGTCCCAGAGCGTGGTGACC
AGAGAAGAGGTAGATATGTCTATGTGGGGAGGGTGAAATTGCCCAGTAGTTGTCTCTTCA
CCATTCTCACATCTGCTAGAGTGGCTAAGAAGGGAGCATTTCCCCAAATTGTCTCCTCTA
CTGCATCTACCTCTAGGCTTGACCATGTCCAATGAAGCTTTGAAGAATTAAATGAGAATT
GCACACTGCCAGTGAAACACTTCTGGTCTTGACATTTTGAAGGAATGATGAATTCATGAG
GAAATTAAACCCAGGATGTCAAGTCAATGATATTTTTGAGTGACCAGTATTTGCTTAACT
TTTACCAGACTGTGGTGGGTATGATTCTGACTCTTAGCTTACAGTGCATCTTGCTGCATC
AGAACACTTGAGTATAGGAGTTCCCATCGCGGCACAGAGAAAACGAACCCAACTAAGAAC
CATGAGGTTGTGGGTGCGTTCGATCCCTGGCCTCACTCAGTGGGTTAAGGATCAGGTGTT
GCCGTGAGCTATGGTGTAAGTCAGACGTGGCTCGGATCTGGCGTTGTTGTGGCAGTGGTG
TAGGCTGGCAGCAACAGCTCCGATTCAACCCCCAGCCTGGGAACCTCCATGTGCCTCGGG
TGTGGCCCGAAAAAGCCCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCCCCCAAATCTCAGAATGGGTTAGAATGATCTAGAATAACTATTTATTCTTGGGG
CCGGTCCAGACCTAATGAATCAGAACCCAGGAACTTGCATTTTTGCAGGTGCTACACCAG
TGTTTGAGTTACTGGCCAAGTGGAATCAGATAAGGCTGCCAAGTGAGGCTGAGCCAAGAT
ATGTCATTCAGCTACGCAAGAAGAATCTGGCAGATCCATCTAGGCAGGAACAAAGATCCA
GATTTTGGGCAGTGAGAATCTGTGAGCTTAATTAACTCCAGTGTACATGATGGATCTCTC
CCTGTGCAGAGGTTCTGAGTTTTCTGCCCTGTTTAGTTCTCTTCTCTCCCTGTCCTAGTT
CTCAGCTGCAAGGAGACCTGAAGGTAAAATGTGTTCCAGGTTTGGGAAGGTGATGGTACT
AGGACCTTGCTACTCAAGTGTGGTTTGCAAATCAGCAGCAACATCACAGCTTTGAAACTT
GTTAGAAATGCAGAAGTTTGGGCTCTACCCCTGACCTGTTAAATCTGAATCTATTTCATC
AAAGTCTTCAGGTGATTCATATTACTTTGTAGTTTGAGAAGCATTGTACCGAGATGACCA
TGCTGTCCTCATGTCAGTGAGAAGTAGAATGATGATTCTGTGATCGTAGAATTGACAGTG
AGTGTGACTGATGTTTTCTGACAAGGGATCTCTGCTTATAAGTCCCAGAGCGTGGTGACC
AGAGAAGAGGTAGATATGTCTATGTGGGGAGGGTGAAATTGCCCAGTAGTTGTCTCTTCA
CCATTCTCACATCTGCTAGAGTGGCTAAGAAGGGAGCATTTCCCCAAATTGTCTCCTCTA
CTGCATCTACCTCTAGGCTTGACCATGTCCAATGAAGCTTTGAAGAATTAAATGAGAATT
GCACACTGCCAGTGAAACACTTCTGGTCTTGACATTTTGAAGGAATGATGAATTCATGAG
GAAATTAAACCCAGGATGTCAAGTCAATGATATTTTTGAGTGACCAGTATTTGCTTAACT
TTTACCAGACTGTGGTGGGTATGATTCTGACTCTTAGCTTACAGTGCATCTTGCTGCATC
AGAACACTTGAGTATAGGAGTTCCCATCGCGGCACAGAGAAAACGAACCCAACTAAGAAC
CATGAGGTTGTGGGTGCGTTCGATCCCTGGCCTCACTCAGTGGGTTAAGGATCAGGTGTT
GCCGTGAGCTATGGTGTAAGTCAGACGTGGCTCGGATCTGGCGTTGTTGTGGCAGTGGTG
TAGGCTGGCAGCAACAGCTCCGATTCAACCCCCAGCCTGGGAACCTCCATGTGCCTCGGG
TGTGGCCCGAAAAAGCCCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               726-839, + strand, RNAz p=0.794454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               726-839, + strand, RNAz p=0.794454

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               398-1097, gnl|bosTau2|chr10 (19186429-19185733)
               

               
               398-1097, gnl|Hg17|chr15 (32935367-32934647)
               

               
               398-1097, gnl|Mm7|chr2 (113840830-113840222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               398-1097, gnl|bosTau2|chr10 (19186429-19185733)
               

               
               398-1097, gnl|Hg17|chr15 (32935367-32934647)
               

               
               398-1097, gnl|Mm7|chr2 (113840830-113840222)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               cst (0.140036)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               cst (0.140036)
               

               
               ese (0.126502)

	398-1097, gnl\|bosTau2\|chr10 (19186429-19185733)
	398-1097, gnl\|Hg17\|chr15 (32935367-32934647)
	398-1097, gnl\|Mm7\|chr2 (113840830-113840222)

	elu (0.385356)
	cty (0.31224)
	fce (0.271592)
	ill (0.175593)
	cst (0.140036)
	ese (0.126502)