Non-Coding RNA Search

Ss1.1-Thy1-THY010049E10.5

Sequence:


               
               AATCAAAGTCGGAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTG
TGTTGCTCTGGGGGCTCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATT
CCCTTCCAGCCTCGCCGAGGTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCA
ACAGCAGCTGGACACGCACGGATGGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTT
GGCGCAATGACTCGGACACCATCGTCTTCCTGAAGCCCTGGTCCCAGGGCACACTGAGCG
ACCAGCTGGCGAATCAGCTGCAGCATATATTTAAGGGTTATCGCAGCAGCTTCACCAGGG
ACATAAGGGAATTCGTCAAGATGCTGGGCAGCGACTACCCCTTTGAGATCCAGATATCTG
CTGGATGTGAGGTGCTTTCGGGGAACAGCTCAGAAAGCTTCCTCCACTCAGCATTTCAAG
GAACAGACATCATGAGTTTCCAAGGAACTTCTTGGGTGTCAGCTCCAGATGCTCCACCTT
GGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCGTCACCTACTTTCATTTATCTGAA
GGCTCCTCTACGGGTATATAACCCTCACACCGATTTCCTCAAGCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAAAGTCGGAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTG
TGTTGCTCTGGGGGCTCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATT
CCCTTCCAGCCTCGCCGAGGTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCA
ACAGCAGCTGGACACGCACGGATGGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTT
GGCGCAATGACTCGGACACCATCGTCTTCCTGAAGCCCTGGTCCCAGGGCACACTGAGCG
ACCAGCTGGCGAATCAGCTGCAGCATATATTTAAGGGTTATCGCAGCAGCTTCACCAGGG
ACATAAGGGAATTCGTCAAGATGCTGGGCAGCGACTACCCCTTTGAGATCCAGATATCTG
CTGGATGTGAGGTGCTTTCGGGGAACAGCTCAGAAAGCTTCCTCCACTCAGCATTTCAAG
GAACAGACATCATGAGTTTCCAAGGAACTTCTTGGGTGTCAGCTCCAGATGCTCCACCTT
GGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCGTCACCTACTTTCATTTATCTGAA
GGCTCCTCTACGGGTATATAACCCTCACACCGATTTCCTCAAGCTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5006614|gb|AAD37581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5006614|gb|AAD37581.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               102-396, gnl|bosTau2|chr3 (9743843-9743550)
               

               
               102-396, gnl|Hg17|chr1 (154964290-154964584)
               

               
               102-396, gnl|Mm7|chr3 (87111784-87111485)
               


               
               403-576, gnl|bosTau2|chr3 (9743251-9743078)
               

               
               403-576, gnl|Hg17|chr1 (154964901-154965074)
               

               
               403-576, gnl|Mm7|chr3 (87111196-87111023)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-396, gnl|bosTau2|chr3 (9743843-9743550)
               

               
               102-396, gnl|Hg17|chr1 (154964290-154964584)
               

               
               102-396, gnl|Mm7|chr3 (87111784-87111485)
               


               
               403-576, gnl|bosTau2|chr3 (9743251-9743078)
               

               
               403-576, gnl|Hg17|chr1 (154964901-154965074)
               

               
               403-576, gnl|Mm7|chr3 (87111196-87111023)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               med (0.116252)

	102-396, gnl\|bosTau2\|chr3 (9743843-9743550)
	102-396, gnl\|Hg17\|chr1 (154964290-154964584)
	102-396, gnl\|Mm7\|chr3 (87111784-87111485)

	403-576, gnl\|bosTau2\|chr3 (9743251-9743078)
	403-576, gnl\|Hg17\|chr1 (154964901-154965074)
	403-576, gnl\|Mm7\|chr3 (87111196-87111023)