Ss1.1-Thy1-THY010050B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCGGAACCCGGGGAGTGGGTGCAGACTTTTCCTCCGAGGTCCAGGACAGCGGTTGGC CGGGCAGCTGGAGTGGAGGCCACGCCACCTGCGGGGAAGAACCTGAGCCGAGGCGGGAAG ATGGCTGCAGACAAGCCCTCAGATCAGGGAGCAGAGAAACATGAGGGACCGGGTCAGTCT TCTGGGATCACTGATCAAGAGAAGGAGTTGTCCACCAATGCTTTCCAAGCTTTCACAGCT GGAAATTATGATGTATGTCTGCAGCATCTTGCCTGCCTACAAGATATAAACAAAGATGAT TATAAAATAATTTTGAACACAGCAGTAGCTGAATTTTTTAAAAGTAACCAAACCACAACA GATAGTTTGAGACAAACACTTAACCAGCTGAAGAATCAGGTCCATTCTGCTGTTGAAGAA ATGGATGGATTAGATGATGTTGAAAATAGCATGTTGTATTACAATCAAGCAGTGATTCTT TATCATCTGCGGCAGTACACAGAAGCCATATCAGTTGGTGAAAAACTTTATCAGTTTATA GAGCCTTTTGAAGAAAAATTTGCCCAAGCAGTGTGTTTTTTGCTTGTAGACCTCTATATA TTAACCTACCAAGCTGAGAAAGCTTTACATCTTCTTGCTGTTTTGGAAAAAATGATTTCA CAGGGCAACAATAACAAAAATGGAAAGAATGAGGCTGGTAATAACACCAACAAAGACACG TCTAACCATAAAGGTGAAAGCGGAGCTCTCATAGAAGCTGCAAAGTCAAAGATACATCAG TATAAAGTAAGAGCTTATATCCAAATGAAGTCCCTGAAGGCATGCAAAAGGGAAATCAAG TCAGTCATGAACACAGCTGGGAATTCTGCACCCTCTTTGTTTCTTAAAAGCAATTTTGAA TACTTAAGAGGCAATTATCGGAAAGCTGTGAAGCTCCTGAATAGTTCAAACATTGCTGAG CATCCAGGATTCATGAAAACAGGTGAATGCTTGAGATGCATGTTCTGGAATAATCTTGGT TGTATCCATTTTGCCATGAGCAAGCACAATTTGGGAATTTTCTACTTTAAAAAGGCTCTG CAAGAGAATGACAATGTCTGTGCACAGCTTAGTGCAGGCAGCACTGATCCAGGCAAAAAA TTTTCAGGAAGACCCATGTGTACATTACTAACCAACAAGAGGTATGAGTTGCTTTATAAC TGTGGGATTCAGCTGCTTCACATCGGAAGGCCTCTTGCTGCGTTTGAATGTCTGATTGAA GCTGTTCAGGTTTATCATGCAAACCCCCGCCTCTGGCTACGGCTGGCAGAATGCTGCATT GCTGCCAATAAGGGGACTTCTGAACAAGAAACTAAAGGTCTTCCGAGTAAAAAAGGAATT GTGCAGTCTATTGTTGGTCAAGGCTATCATCGTAAAATAGTTCTGGCATCACAGTCCATA CAAAATACTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCGGAACCCGGGGAGTGGGTGCAGACTTTTCCTCCGAGGTCCAGGACAGCGGTTGGC CGGGCAGCTGGAGTGGAGGCCACGCCACCTGCGGGGAAGAACCTGAGCCGAGGCGGGAAG ATGGCTGCAGACAAGCCCTCAGATCAGGGAGCAGAGAAACATGAGGGACCGGGTCAGTCT TCTGGGATCACTGATCAAGAGAAGGAGTTGTCCACCAATGCTTTCCAAGCTTTCACAGCT GGAAATTATGATGTATGTCTGCAGCATCTTGCCTGCCTACAAGATATAAACAAAGATGAT TATAAAATAATTTTGAACACAGCAGTAGCTGAATTTTTTAAAAGTAACCAAACCACAACA GATAGTTTGAGACAAACACTTAACCAGCTGAAGAATCAGGTCCATTCTGCTGTTGAAGAA ATGGATGGATTAGATGATGTTGAAAATAGCATGTTGTATTACAATCAAGCAGTGATTCTT TATCATCTGCGGCAGTACACAGAAGCCATATCAGTTGGTGAAAAACTTTATCAGTTTATA GAGCCTTTTGAAGAAAAATTTGCCCAAGCAGTGTGTTTTTTGCTTGTAGACCTCTATATA TTAACCTACCAAGCTGAGAAAGCTTTACATCTTCTTGCTGTTTTGGAAAAAATGATTTCA CAGGGCAACAATAACAAAAATGGAAAGAATGAGGCTGGTAATAACACCAACAAAGACACG TCTAACCATAAAGGTGAAAGCGGAGCTCTCATAGAAGCTGCAAAGTCAAAGATACATCAG TATAAAGTAAGAGCTTATATCCAAATGAAGTCCCTGAAGGCATGCAAAAGGGAAATCAAG TCAGTCATGAACACAGCTGGGAATTCTGCACCCTCTTTGTTTCTTAAAAGCAATTTTGAA TACTTAAGAGGCAATTATCGGAAAGCTGTGAAGCTCCTGAATAGTTCAAACATTGCTGAG CATCCAGGATTCATGAAAACAGGTGAATGCTTGAGATGCATGTTCTGGAATAATCTTGGT TGTATCCATTTTGCCATGAGCAAGCACAATTTGGGAATTTTCTACTTTAAAAAGGCTCTG CAAGAGAATGACAATGTCTGTGCACAGCTTAGTGCAGGCAGCACTGATCCAGGCAAAAAA TTTTCAGGAAGACCCATGTGTACATTACTAACCAACAAGAGGTATGAGTTGCTTTATAAC TGTGGGATTCAGCTGCTTCACATCGGAAGGCCTCTTGCTGCGTTTGAATGTCTGATTGAA GCTGTTCAGGTTTATCATGCAAACCCCCGCCTCTGGCTACGGCTGGCAGAATGCTGCATT GCTGCCAATAAGGGGACTTCTGAACAAGAAACTAAAGGTCTTCCGAGTAAAAAAGGAATT GTGCAGTCTATTGTTGGTCAAGGCTATCATCGTAAAATAGTTCTGGCATCACAGTCCATA CAAAATACTGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 4-148, gnl|bosTau2|chr22 (4666784-4666925) | |
| 4-148, gnl|Hg17|chr3 (32701843-32701984) | |
| 4-148, gnl|Mm7|chr9 (114291151-114291009) | |
| 238-401, gnl|bosTau2|chr22 (4682712-4682875) | |
| 238-401, gnl|canFam2|chr23 (7052927-7052739) | |
| 238-401, gnl|danRer3|chr21 (16419437-16419634) | |
| 238-401, gnl|dasNov1|scaffold_13383 (3689-3875) | |
| 238-401, gnl|echTel1|scaffold_322284 (79984-79794) | |
| 238-401, gnl|fr1|chrUn (96450450-96450629) | |
| 238-401, gnl|galGal2|chr2 (39618122-39618309) | |
| 238-401, gnl|hg17|chr3 (32721287-32721484) | |
| 238-401, gnl|Hg17|chr3 (32721307-32721470) | |
| 238-401, gnl|mm7|chr9 (114283114-114282909) | |
| 238-401, gnl|Mm7|chr9 (114283079-114282916) | |
| 238-401, gnl|monDom2|scaffold_7 (88184522-88184702) | |
| 238-401, gnl|oryCun1|scaffold_207346 (49316-49124) | |
| 238-401, gnl|panTro1|chr2 (33724006-33724204) | |
| 238-401, gnl|rheMac2|chr2 (175183155-175183354) | |
| 238-401, gnl|rn3|chr8 (119069277-119069071) | |
| 238-401, gnl|tetNig1|chrUn_random (32255994-32255809) | |
| 238-401, gnl|xenTro1|scaffold_319 (1255225-1255030) | |
| 550-694, gnl|bosTau2|chr22 (4687273-4687417) | |
| 550-694, gnl|canFam2|chr23 (7045046-7044880) | |
| 550-694, gnl|danRer3|chr21 (16420815-16420976) | |
| 550-694, gnl|dasNov1|scaffold_13383 (10095-10261) | |
| 550-694, gnl|echTel1|scaffold_174125 (3727-3550) | |
| 550-694, gnl|fr1|chrUn (96451767-96451930) | |
| 550-694, gnl|galGal2|chr2 (39619436-39619605) | |
| 550-694, gnl|hg17|chr3 (32729703-32729869) | |
| 550-694, gnl|Hg17|chr3 (32729722-32729866) | |
| 550-694, gnl|loxAfr1|scaffold_6174 (12784-12961) | |
| 550-694, gnl|mm7|chr9 (114278653-114278487) | |
| 550-694, gnl|Mm7|chr9 (114278632-114278488) | |
| 550-694, gnl|monDom2|scaffold_7 (88187333-88187502) | |
| 550-694, gnl|oryCun1|scaffold_169688 (1259-1428) | |
| 550-694, gnl|panTro1|chr2 (33732414-33732580) | |
| 550-694, gnl|rheMac2|chr2 (175191382-175191548) | |
| 550-694, gnl|rn3|chr8 (119062742-119062576) | |
| 550-694, gnl|tetNig1|chrUn_random (32254894-32254732) | |
| 550-694, gnl|xenTro1|scaffold_319 (1245166-1244994) | |
| 865-987, gnl|bosTau2|chr22 (4690577-4690699) | |
| 865-987, gnl|canFam2|chr23 (7040872-7040725) | |
| 865-987, gnl|danRer3|chr21 (16425486-16425635) | |
| 865-987, gnl|echTel1|scaffold_273511 (8708-8562) | |
| 865-987, gnl|fr1|chrUn (96453039-96453187) | |
| 865-987, gnl|galGal2|chr2 (39622353-39622503) | |
| 865-987, gnl|hg17|chr3 (32736590-32736739) | |
| 865-987, gnl|Hg17|chr3 (32736610-32736732) | |
| 865-987, gnl|loxAfr1|scaffold_6174 (16538-16685) | |
| 865-987, gnl|mm7|chr9 (114274079-114273931) | |
| 865-987, gnl|Mm7|chr9 (114274058-114273936) | |
| 865-987, gnl|monDom2|scaffold_7 (88192161-88192306) | |
| 865-987, gnl|oryCun1|scaffold_120840 (26027-25878) | |
| 865-987, gnl|panTro1|chr2 (33747845-33747994) | |
| 865-987, gnl|rheMac2|chr2 (175197624-175197773) | |
| 865-987, gnl|rn3|chr8 (119057270-119057122) | |
| 865-987, gnl|tetNig1|chrUn_random (32254124-32253990) | |
| 865-987, gnl|xenTro1|scaffold_319 (1234218-1234069) | |
| 1130-1334, gnl|bosTau2|chr22 (4695045-4695249) | |
| 1130-1334, gnl|canFam2|chr23 (7034513-7034293) | |
| 1130-1334, gnl|danRer3|chr21 (16428833-16429053) | |
| 1130-1334, gnl|echTel1|scaffold_273511 (6293-6073) | |
| 1130-1334, gnl|fr1|chrUn (96453594-96453814) | |
| 1130-1334, gnl|galGal2|chr2 (39624372-39624581) | |
| 1130-1334, gnl|hg17|chr3 (32744149-32744369) | |
| 1130-1334, gnl|Hg17|chr3 (32744161-32744365) | |
| 1130-1334, gnl|loxAfr1|scaffold_6174 (21555-21775) | |
| 1130-1334, gnl|mm7|chr9 (114269107-114268887) | |
| 1130-1334, gnl|Mm7|chr9 (114269093-114268889) | |
| 1130-1334, gnl|monDom2|scaffold_7 (88196526-88196746) | |
| 1130-1334, gnl|oryCun1|scaffold_120840 (15561-15341) | |
| 1130-1334, gnl|panTro1|chr2 (33755401-33755621) | |
| 1130-1334, gnl|rheMac2|chr2 (175204666-175204886) | |
| 1130-1334, gnl|rn3|chr8 (119053666-119053446) | |
| 1130-1334, gnl|tetNig1|chrUn_random (32253638-32253418) | |
| 1130-1334, gnl|xenTro1|scaffold_319 (1232238-1232025) | |
| 1335-1451, gnl|bosTau2|chr22 (4698384-4698500) | |
| 1335-1451, gnl|canFam2|chr23 (7029417-7029227) | |
| 1335-1451, gnl|danRer3|chr21 (16429799-16429998) | |
| 1335-1451, gnl|dasNov1|scaffold_83788 (4871-4682) | |
| 1335-1451, gnl|echTel1|scaffold_273511 (1943-1759) | |
| 1335-1451, gnl|fr1|chrUn (96453925-96454096) | |
| 1335-1451, gnl|galGal2|chr2 (39629049-39629228) | |
| 1335-1451, gnl|hg17|chr3 (32749862-32750052) | |
| 1335-1451, gnl|Hg17|chr3 (32749918-32750034) | |
| 1335-1451, gnl|loxAfr1|scaffold_6174 (26025-26215) | |
| 1335-1451, gnl|mm7|chr9 (114266265-114266075) | |
| 1335-1451, gnl|Mm7|chr9 (114266207-114266091) | |
| 1335-1451, gnl|monDom2|scaffold_7 (88198791-88198989) | |
| 1335-1451, gnl|oryCun1|scaffold_120840 (11738-11547) | |
| 1335-1451, gnl|panTro1|chr2 (33760804-33760994) | |
| 1335-1451, gnl|rheMac2|chr2 (175211468-175211658) | |
| 1335-1451, gnl|rn3|chr8 (119051686-119051505) | |
| 1335-1451, gnl|tetNig1|chrUn_random (32253296-32253129) | |
| 1335-1451, gnl|xenTro1|scaffold_319 (1229777-1229581) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-148, gnl|bosTau2|chr22 (4666784-4666925) | |
| 4-148, gnl|Hg17|chr3 (32701843-32701984) | |
| 4-148, gnl|Mm7|chr9 (114291151-114291009) | |
| 238-401, gnl|bosTau2|chr22 (4682712-4682875) | |
| 238-401, gnl|canFam2|chr23 (7052927-7052739) | |
| 238-401, gnl|danRer3|chr21 (16419437-16419634) | |
| 238-401, gnl|dasNov1|scaffold_13383 (3689-3875) | |
| 238-401, gnl|echTel1|scaffold_322284 (79984-79794) | |
| 238-401, gnl|fr1|chrUn (96450450-96450629) | |
| 238-401, gnl|galGal2|chr2 (39618122-39618309) | |
| 238-401, gnl|hg17|chr3 (32721287-32721484) | |
| 238-401, gnl|Hg17|chr3 (32721307-32721470) | |
| 238-401, gnl|mm7|chr9 (114283114-114282909) | |
| 238-401, gnl|Mm7|chr9 (114283079-114282916) | |
| 238-401, gnl|monDom2|scaffold_7 (88184522-88184702) | |
| 238-401, gnl|oryCun1|scaffold_207346 (49316-49124) | |
| 238-401, gnl|panTro1|chr2 (33724006-33724204) | |
| 238-401, gnl|rheMac2|chr2 (175183155-175183354) | |
| 238-401, gnl|rn3|chr8 (119069277-119069071) | |
| 238-401, gnl|tetNig1|chrUn_random (32255994-32255809) | |
| 238-401, gnl|xenTro1|scaffold_319 (1255225-1255030) | |
| 550-694, gnl|bosTau2|chr22 (4687273-4687417) | |
| 550-694, gnl|canFam2|chr23 (7045046-7044880) | |
| 550-694, gnl|danRer3|chr21 (16420815-16420976) | |
| 550-694, gnl|dasNov1|scaffold_13383 (10095-10261) | |
| 550-694, gnl|echTel1|scaffold_174125 (3727-3550) | |
| 550-694, gnl|fr1|chrUn (96451767-96451930) | |
| 550-694, gnl|galGal2|chr2 (39619436-39619605) | |
| 550-694, gnl|hg17|chr3 (32729703-32729869) | |
| 550-694, gnl|Hg17|chr3 (32729722-32729866) | |
| 550-694, gnl|loxAfr1|scaffold_6174 (12784-12961) | |
| 550-694, gnl|mm7|chr9 (114278653-114278487) | |
| 550-694, gnl|Mm7|chr9 (114278632-114278488) | |
| 550-694, gnl|monDom2|scaffold_7 (88187333-88187502) | |
| 550-694, gnl|oryCun1|scaffold_169688 (1259-1428) | |
| 550-694, gnl|panTro1|chr2 (33732414-33732580) | |
| 550-694, gnl|rheMac2|chr2 (175191382-175191548) | |
| 550-694, gnl|rn3|chr8 (119062742-119062576) | |
| 550-694, gnl|tetNig1|chrUn_random (32254894-32254732) | |
| 550-694, gnl|xenTro1|scaffold_319 (1245166-1244994) | |
| 865-987, gnl|bosTau2|chr22 (4690577-4690699) | |
| 865-987, gnl|canFam2|chr23 (7040872-7040725) | |
| 865-987, gnl|danRer3|chr21 (16425486-16425635) | |
| 865-987, gnl|echTel1|scaffold_273511 (8708-8562) | |
| 865-987, gnl|fr1|chrUn (96453039-96453187) | |
| 865-987, gnl|galGal2|chr2 (39622353-39622503) | |
| 865-987, gnl|hg17|chr3 (32736590-32736739) | |
| 865-987, gnl|Hg17|chr3 (32736610-32736732) | |
| 865-987, gnl|loxAfr1|scaffold_6174 (16538-16685) | |
| 865-987, gnl|mm7|chr9 (114274079-114273931) | |
| 865-987, gnl|Mm7|chr9 (114274058-114273936) | |
| 865-987, gnl|monDom2|scaffold_7 (88192161-88192306) | |
| 865-987, gnl|oryCun1|scaffold_120840 (26027-25878) | |
| 865-987, gnl|panTro1|chr2 (33747845-33747994) | |
| 865-987, gnl|rheMac2|chr2 (175197624-175197773) | |
| 865-987, gnl|rn3|chr8 (119057270-119057122) | |
| 865-987, gnl|tetNig1|chrUn_random (32254124-32253990) | |
| 865-987, gnl|xenTro1|scaffold_319 (1234218-1234069) | |
| 1130-1334, gnl|bosTau2|chr22 (4695045-4695249) | |
| 1130-1334, gnl|canFam2|chr23 (7034513-7034293) | |
| 1130-1334, gnl|danRer3|chr21 (16428833-16429053) | |
| 1130-1334, gnl|echTel1|scaffold_273511 (6293-6073) | |
| 1130-1334, gnl|fr1|chrUn (96453594-96453814) | |
| 1130-1334, gnl|galGal2|chr2 (39624372-39624581) | |
| 1130-1334, gnl|hg17|chr3 (32744149-32744369) | |
| 1130-1334, gnl|Hg17|chr3 (32744161-32744365) | |
| 1130-1334, gnl|loxAfr1|scaffold_6174 (21555-21775) | |
| 1130-1334, gnl|mm7|chr9 (114269107-114268887) | |
| 1130-1334, gnl|Mm7|chr9 (114269093-114268889) | |
| 1130-1334, gnl|monDom2|scaffold_7 (88196526-88196746) | |
| 1130-1334, gnl|oryCun1|scaffold_120840 (15561-15341) | |
| 1130-1334, gnl|panTro1|chr2 (33755401-33755621) | |
| 1130-1334, gnl|rheMac2|chr2 (175204666-175204886) | |
| 1130-1334, gnl|rn3|chr8 (119053666-119053446) | |
| 1130-1334, gnl|tetNig1|chrUn_random (32253638-32253418) | |
| 1130-1334, gnl|xenTro1|scaffold_319 (1232238-1232025) | |
| 1335-1451, gnl|bosTau2|chr22 (4698384-4698500) | |
| 1335-1451, gnl|canFam2|chr23 (7029417-7029227) | |
| 1335-1451, gnl|danRer3|chr21 (16429799-16429998) | |
| 1335-1451, gnl|dasNov1|scaffold_83788 (4871-4682) | |
| 1335-1451, gnl|echTel1|scaffold_273511 (1943-1759) | |
| 1335-1451, gnl|fr1|chrUn (96453925-96454096) | |
| 1335-1451, gnl|galGal2|chr2 (39629049-39629228) | |
| 1335-1451, gnl|hg17|chr3 (32749862-32750052) | |
| 1335-1451, gnl|Hg17|chr3 (32749918-32750034) | |
| 1335-1451, gnl|loxAfr1|scaffold_6174 (26025-26215) | |
| 1335-1451, gnl|mm7|chr9 (114266265-114266075) | |
| 1335-1451, gnl|Mm7|chr9 (114266207-114266091) | |
| 1335-1451, gnl|monDom2|scaffold_7 (88198791-88198989) | |
| 1335-1451, gnl|oryCun1|scaffold_120840 (11738-11547) | |
| 1335-1451, gnl|panTro1|chr2 (33760804-33760994) | |
| 1335-1451, gnl|rheMac2|chr2 (175211468-175211658) | |
| 1335-1451, gnl|rn3|chr8 (119051686-119051505) | |
| 1335-1451, gnl|tetNig1|chrUn_random (32253296-32253129) | |
| 1335-1451, gnl|xenTro1|scaffold_319 (1229777-1229581) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |