Ss1.1-Thy1-THY010050F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTACATTTACCTCGCCCATGAAGGAAGAAAACAAACACAGCTTGAACCCCAGGTTTGTC GAAGATTTTATTCAAATAGAACCAATTGGCTCAGGTGGATTTGGCCAAGTTTTCAAAGCA AAACACAAGATTGATAAGAAGACTTATGTTATTAAACGTGTTAAATATGATTGCGAGAAG GTAGAGCGTGAAGTGAAAGCTTTGGCAACGCTTAAACATCCAAATATTGTTCTCTACTAC GGTTGCTGGGATGGGAATGATTATGATCCTGAGCAAAGCATGAATACTTTAAGATCAAAG ACAAGGTGCCTTTTCATCCAAATGGAATACTGTGATAAAGGGACATTGGAACAATGGATT GACAGCCAAAGAAACAAGGAACCAGATAAATGTTTGGCTTTGGAATTCTTTGAACAAATA ACAACAGGAGTGCATTATATACATTCAAAACAGTTAATTCATAGAGACCTTAAGCCAGGT AACATATTTTTAGTAGATACAAACCAAATAAAGATTGGAGACTTTGGACTTGTAACATCC CTGAAAAATGATGAAAAGCGGACAAGTCAAAAGGGAACTTTGCGATACATGAGCCCAGAA CAGAGTTCTTCAGAAGACTATGGAAATGAAGTGGACATCTATGCTTTGGGGCTAATTCTT GCAGAACTTCTTCACATATGTCGCACTTTTTCAGAAACACTGAAGCTTTTTGAATGCCTG AAGGCTGGCGTCTTAGATGTATTTAACTACAAAGAAAAAGGTCTTCTACGAAAATTACTC TCAAATGACCCCAAGAAACGACCTAATGCATCTGAAATACTGAAGACTTTGAAGGAGTGG AAGAACGTCACAGAGAAAAAGAAACGAAACACATGTTAGATACTAAAAAAAATATCCTGC TTCTAATAGTTGATTTTCCTGTAACTGTCTAAAATTTGCTGGGAATTATTGATGGTATTT CCCTTCTATTTTCATTTTCCCTTAATTTTTTTGCCACATTTGCAGAAAGGTTTGCATTTT TTTTTTTTTGTTACTTTAAAAACATTCTTGAGGAGTTCCAGTCATGGTGCAGTGGTTAAC GAATCCGACTAGGAACCATGAGGTTGCGGGTTCCATCCCCGGCCTTGCGCAGTGGGTCGA GGATCAGGTGTGAGCTGTGGTGTAGGTCGCAGATGCGGCTCGGATCCCGCGTTGCTGTGG CTCTGGCATAGGCCGGCGGCTATAGCTCCGATTAGACCCCTAGCCTGGGAATCTCCATAT GCCATGGGAATGGCCTTAGAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTACATTTACCTCGCCCATGAAGGAAGAAAACAAACACAGCTTGAACCCCAGGTTTGTC GAAGATTTTATTCAAATAGAACCAATTGGCTCAGGTGGATTTGGCCAAGTTTTCAAAGCA AAACACAAGATTGATAAGAAGACTTATGTTATTAAACGTGTTAAATATGATTGCGAGAAG GTAGAGCGTGAAGTGAAAGCTTTGGCAACGCTTAAACATCCAAATATTGTTCTCTACTAC GGTTGCTGGGATGGGAATGATTATGATCCTGAGCAAAGCATGAATACTTTAAGATCAAAG ACAAGGTGCCTTTTCATCCAAATGGAATACTGTGATAAAGGGACATTGGAACAATGGATT GACAGCCAAAGAAACAAGGAACCAGATAAATGTTTGGCTTTGGAATTCTTTGAACAAATA ACAACAGGAGTGCATTATATACATTCAAAACAGTTAATTCATAGAGACCTTAAGCCAGGT AACATATTTTTAGTAGATACAAACCAAATAAAGATTGGAGACTTTGGACTTGTAACATCC CTGAAAAATGATGAAAAGCGGACAAGTCAAAAGGGAACTTTGCGATACATGAGCCCAGAA CAGAGTTCTTCAGAAGACTATGGAAATGAAGTGGACATCTATGCTTTGGGGCTAATTCTT GCAGAACTTCTTCACATATGTCGCACTTTTTCAGAAACACTGAAGCTTTTTGAATGCCTG AAGGCTGGCGTCTTAGATGTATTTAACTACAAAGAAAAAGGTCTTCTACGAAAATTACTC TCAAATGACCCCAAGAAACGACCTAATGCATCTGAAATACTGAAGACTTTGAAGGAGTGG AAGAACGTCACAGAGAAAAAGAAACGAAACACATGTTAGATACTAAAAAAAATATCCTGC TTCTAATAGTTGATTTTCCTGTAACTGTCTAAAATTTGCTGGGAATTATTGATGGTATTT CCCTTCTATTTTCATTTTCCCTTAATTTTTTTGCCACATTTGCAGAAAGGTTTGCATTTT TTTTTTTTTGTTACTTTAAAAACATTCTTGAGGAGTTCCAGTCATGGTGCAGTGGTTAAC GAATCCGACTAGGAACCATGAGGTTGCGGGTTCCATCCCCGGCCTTGCGCAGTGGGTCGA GGATCAGGTGTGAGCTGTGGTGTAGGTCGCAGATGCGGCTCGGATCCCGCGTTGCTGTGG CTCTGGCATAGGCCGGCGGCTATAGCTCCGATTAGACCCCTAGCCTGGGAATCTCCATAT GCCATGGGAATGGCCTTAGAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 52-184, gnl|bosTau2|chr11 (18742117-18741985) | |
| 52-184, gnl|canFam2|chr17 (32617223-32617469) | |
| 52-184, gnl|dasNov1|scaffold_105141 (5487-5263) | |
| 52-184, gnl|hg17|chr2 (37265014-37265252) | |
| 52-184, gnl|Hg17|chr2 (37265207-37265075) | |
| 52-184, gnl|loxAfr1|scaffold_65827 (12331-12566) | |
| 52-184, gnl|mm7|chr17 (77166805-77167037) | |
| 52-184, gnl|Mm7|chr17 (77166993-77166861) | |
| 52-184, gnl|monDom2|scaffold_1 (134779430-134779201) | |
| 52-184, gnl|oryCun1|scaffold_118441 (4405-4639) | |
| 52-184, gnl|panTro1|chr12 (38719772-38720010) | |
| 52-184, gnl|rn3|chr6_random (113713-113483) | |
| 292-474, gnl|bosTau2|chr11 (18735907-18735725) | |
| 292-474, gnl|canFam2|chr17 (32610908-32611201) | |
| 292-474, gnl|dasNov1|scaffold_168874 (3242-3535) | |
| 292-474, gnl|hg17|chr2 (37258687-37258989) | |
| 292-474, gnl|Hg17|chr2 (37258935-37258753) | |
| 292-474, gnl|loxAfr1|scaffold_123250 (29990-30271) | |
| 292-474, gnl|mm7|chr17 (77164327-77164599) | |
| 292-474, gnl|Mm7|chr17 (77164575-77164393) | |
| 292-474, gnl|monDom2|scaffold_1 (134783581-134783275) | |
| 292-474, gnl|oryCun1|scaffold_175748 (126040-126315) | |
| 292-474, gnl|panTro1|chr12 (38713450-38713758) | |
| 292-474, gnl|rn3|chr6_random (116502-116234) | |
| 757-1025, gnl|bosTau2|chr11 (18730058-18729783) | |
| 757-1025, gnl|Hg17|chr2 (37246189-37245901) | |
| 757-1025, gnl|Mm7|chr17 (77155815-77155590) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-184, gnl|bosTau2|chr11 (18742117-18741985) | |
| 52-184, gnl|canFam2|chr17 (32617223-32617469) | |
| 52-184, gnl|dasNov1|scaffold_105141 (5487-5263) | |
| 52-184, gnl|hg17|chr2 (37265014-37265252) | |
| 52-184, gnl|Hg17|chr2 (37265207-37265075) | |
| 52-184, gnl|loxAfr1|scaffold_65827 (12331-12566) | |
| 52-184, gnl|mm7|chr17 (77166805-77167037) | |
| 52-184, gnl|Mm7|chr17 (77166993-77166861) | |
| 52-184, gnl|monDom2|scaffold_1 (134779430-134779201) | |
| 52-184, gnl|oryCun1|scaffold_118441 (4405-4639) | |
| 52-184, gnl|panTro1|chr12 (38719772-38720010) | |
| 52-184, gnl|rn3|chr6_random (113713-113483) | |
| 292-474, gnl|bosTau2|chr11 (18735907-18735725) | |
| 292-474, gnl|canFam2|chr17 (32610908-32611201) | |
| 292-474, gnl|dasNov1|scaffold_168874 (3242-3535) | |
| 292-474, gnl|hg17|chr2 (37258687-37258989) | |
| 292-474, gnl|Hg17|chr2 (37258935-37258753) | |
| 292-474, gnl|loxAfr1|scaffold_123250 (29990-30271) | |
| 292-474, gnl|mm7|chr17 (77164327-77164599) | |
| 292-474, gnl|Mm7|chr17 (77164575-77164393) | |
| 292-474, gnl|monDom2|scaffold_1 (134783581-134783275) | |
| 292-474, gnl|oryCun1|scaffold_175748 (126040-126315) | |
| 292-474, gnl|panTro1|chr12 (38713450-38713758) | |
| 292-474, gnl|rn3|chr6_random (116502-116234) | |
| 757-1025, gnl|bosTau2|chr11 (18730058-18729783) | |
| 757-1025, gnl|Hg17|chr2 (37246189-37245901) | |
| 757-1025, gnl|Mm7|chr17 (77155815-77155590) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.20816) | |
| spl (0.143184) | |
| csk (0.140746) | |
| thg (0.126791) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| spl (0.143184) | |
| csk (0.140746) | |
| thg (0.126791) |