Ss1.1-Thy1-THY010051E03.5
|
TCCCCGGTGCAGAGGCCGGGGCGTGCAGAGCGGCAGGCAGTGGTCACAGAGGCGGTGGAG
CGATGGCCTTCAGCGGCGCCCAGGCTCCCTACATGAACCCGATGGTCCCCTTCACAGGGA
TGATCCAAGGGGGCCTCCAGGACGGACTTCAGATCACCATCAATGGGACCGTTCTCATGT
CCAGTGGAAGCAGGTTTACTGTGAACTTGCAGACCGGCCACAGGGACAATGACATTGCCT
TCCACTTCAACCCTCGGTTCGAAGAGGGCGGCTACGTGGTCTGCAACACGAAGCAGAATG
GAATCTGGGGGCCTGAGGAGAGGAAGATGCAAATGCCCTTCCAGCGCGGACATCCATTTG
AGCTCAGCTTCCTGGTCCAGAGCTCGCAGTTCCAGGTGACAGTGAACGGGAGGCTCTTTG
TGCAGTACACACACCGCGTGCCCTTCCACCGCGTGGACACCATCTCCGTGACAGGCATCG
TCCAGCTGTCCTACATCAGCTTCCAGCCTCCAGGTCGCTGGCCGGCCAACTCGGCTCCCA
TTACTCAAACCGTCATCCACACTGTGCAGAGCACCCCTGGACAGATGTTCCCTAATCCCA
TGATCCCACCTATGGCATATCCTAACCCAGTCCTTCCCATCCCTTTCTTCGCCTCCATCC
CGGGCGGCCTGTACCCCTCCAAGAGCATCATGGTGTCGGGCACCATCCTGCCCAGCGCTC
AGAGTTTCTACATCAACTTGCGCTCGGGGAGTGACATCGCCTTCCACCTGAATCCCCGCT
TCAAGGAGAACGCGGTGGTCCGCAACACGCAGATCGGCAGCTCCTGGGGGCCTGAGGAGC
GAGGCCTGCCCCGGAAGATGCCCTTCTCCAGAGGCCAGAGCTTCTTGGTGTGGATCCTCT
GTGAAAGCCACTGCTTCAAGGTGGCCGTGGACGGTCAGCACCTATTTGAATACTACCACC
GCCTGAAGCACCTGCCCACCATCAACTCCCTGGAGGTGGGGGGCGACATCCAGCTGACGC
ACGTGCAGCCATAGACGAGCCCCGCCCTGGGGGTGAGGCCTGGGCCGAAAGGCTGTCTGG
GTCTGCTCGTCACCCCCCTTCCCAGGCTGCCAGGACCTGGGGCTTGGCTGGAGAGACCGT
GTCCTTGCCTGGCCCTGCTTCTGGCTGCAGCCTCCCCTGGAGCGGGGAGGACAGCTGGCT
GGGACCGCCTTCCTCCACCTACGGAGGAGGTGCGGTCTGCGCAGGCCGGAGCCCCGTGTT
CCCTGCCCCCGGCCTCTGCCTGGGTCCTGGCCTTCCCAAGCTCCCAGCCCAGGCCTGCCC
ACACCTGCCTCTCCACCCCCCCACCCGGCCTTCCAGTCACCTAGTCCCAAGCCACCAGCT
GTCACTCCACGTGGGAGGCAGTATCCCCTCTTCTTTCTCCAAGCTTGAACCTCTCCTTGC
ACCCTGCACCAACTCTTCCCCGCCCCGGATAGCTGCCTGAGGACACCCCACCGATGGGAG
CTTTCTCCCCTTTCCAGCGTCCTTCCAATAAAGAAAGAAAACTGCTTGAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCCCGGTGCAGAGGCCGGGGCGTGCAGAGCGGCAGGCAGTGGTCACAGAGGCGGTGGAG
CGATGGCCTTCAGCGGCGCCCAGGCTCCCTACATGAACCCGATGGTCCCCTTCACAGGGA
TGATCCAAGGGGGCCTCCAGGACGGACTTCAGATCACCATCAATGGGACCGTTCTCATGT
CCAGTGGAAGCAGGTTTACTGTGAACTTGCAGACCGGCCACAGGGACAATGACATTGCCT
TCCACTTCAACCCTCGGTTCGAAGAGGGCGGCTACGTGGTCTGCAACACGAAGCAGAATG
GAATCTGGGGGCCTGAGGAGAGGAAGATGCAAATGCCCTTCCAGCGCGGACATCCATTTG
AGCTCAGCTTCCTGGTCCAGAGCTCGCAGTTCCAGGTGACAGTGAACGGGAGGCTCTTTG
TGCAGTACACACACCGCGTGCCCTTCCACCGCGTGGACACCATCTCCGTGACAGGCATCG
TCCAGCTGTCCTACATCAGCTTCCAGCCTCCAGGTCGCTGGCCGGCCAACTCGGCTCCCA
TTACTCAAACCGTCATCCACACTGTGCAGAGCACCCCTGGACAGATGTTCCCTAATCCCA
TGATCCCACCTATGGCATATCCTAACCCAGTCCTTCCCATCCCTTTCTTCGCCTCCATCC
CGGGCGGCCTGTACCCCTCCAAGAGCATCATGGTGTCGGGCACCATCCTGCCCAGCGCTC
AGAGTTTCTACATCAACTTGCGCTCGGGGAGTGACATCGCCTTCCACCTGAATCCCCGCT
TCAAGGAGAACGCGGTGGTCCGCAACACGCAGATCGGCAGCTCCTGGGGGCCTGAGGAGC
GAGGCCTGCCCCGGAAGATGCCCTTCTCCAGAGGCCAGAGCTTCTTGGTGTGGATCCTCT
GTGAAAGCCACTGCTTCAAGGTGGCCGTGGACGGTCAGCACCTATTTGAATACTACCACC
GCCTGAAGCACCTGCCCACCATCAACTCCCTGGAGGTGGGGGGCGACATCCAGCTGACGC
ACGTGCAGCCATAGACGAGCCCCGCCCTGGGGGTGAGGCCTGGGCCGAAAGGCTGTCTGG
GTCTGCTCGTCACCCCCCTTCCCAGGCTGCCAGGACCTGGGGCTTGGCTGGAGAGACCGT
GTCCTTGCCTGGCCCTGCTTCTGGCTGCAGCCTCCCCTGGAGCGGGGAGGACAGCTGGCT
GGGACCGCCTTCCTCCACCTACGGAGGAGGTGCGGTCTGCGCAGGCCGGAGCCCCGTGTT
CCCTGCCCCCGGCCTCTGCCTGGGTCCTGGCCTTCCCAAGCTCCCAGCCCAGGCCTGCCC
ACACCTGCCTCTCCACCCCCCCACCCGGCCTTCCAGTCACCTAGTCCCAAGCCACCAGCT
GTCACTCCACGTGGGAGGCAGTATCCCCTCTTCTTTCTCCAAGCTTGAACCTCTCCTTGC
ACCCTGCACCAACTCTTCCCCGCCCCGGATAGCTGCCTGAGGACACCCCACCGATGGGAG
CTTTCTCCCCTTTCCAGCGTCCTTCCAATAAAGAAAGAAAACTGCTTGAAAAAAAAAAAA |
|
gi|4995880|emb|CAB44278.1| |
Protein identifier
|
gi|4995880|emb|CAB44278.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
192-399, gnl|bosTau2|chr19 (12804628-12804835) |
|
192-399, gnl|canFam2|chr9 (45486845-45487053) |
|
192-399, gnl|echTel1|scaffold_308233 (94327-94535) |
|
192-399, gnl|hg17|chr17 (18329972-18330180) |
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192-399, gnl|Hg17|chr17 (22991723-22991930) |
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192-399, gnl|loxAfr1|scaffold_25523 (33506-33298) |
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192-399, gnl|mm7|chr11 (79054767-79054559) |
|
192-399, gnl|Mm7|chr11 (79054766-79054559) |
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192-399, gnl|monDom2|scaffold_44 (13473179-13473387) |
|
192-399, gnl|oryCun1|scaffold_163602 (3974-4185) |
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192-399, gnl|panTro1|chr19 (18754052-18754260) |
|
192-399, gnl|rheMac2|chr16 (22821348-22821556) |
|
192-399, gnl|rn3|chr10 (65153456-65153248) |
|
192-399, gnl|tetNig1|chr16 (8918098-8917908) |
| |
|
887-1540, gnl|bosTau2|chr19 (12814256-12814936) |
|
887-1540, gnl|Hg17|chr17 (22999988-23000689) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
192-399, gnl|bosTau2|chr19 (12804628-12804835) |
|
192-399, gnl|canFam2|chr9 (45486845-45487053) |
|
192-399, gnl|echTel1|scaffold_308233 (94327-94535) |
|
192-399, gnl|hg17|chr17 (18329972-18330180) |
|
192-399, gnl|Hg17|chr17 (22991723-22991930) |
|
192-399, gnl|loxAfr1|scaffold_25523 (33506-33298) |
|
192-399, gnl|mm7|chr11 (79054767-79054559) |
|
192-399, gnl|Mm7|chr11 (79054766-79054559) |
|
192-399, gnl|monDom2|scaffold_44 (13473179-13473387) |
|
192-399, gnl|oryCun1|scaffold_163602 (3974-4185) |
|
192-399, gnl|panTro1|chr19 (18754052-18754260) |
|
192-399, gnl|rheMac2|chr16 (22821348-22821556) |
|
192-399, gnl|rn3|chr10 (65153456-65153248) |
|
192-399, gnl|tetNig1|chr16 (8918098-8917908) |
| |
|
887-1540, gnl|bosTau2|chr19 (12814256-12814936) |
|
887-1540, gnl|Hg17|chr17 (22999988-23000689) |
|
cty (0.936719) |
|
ill (0.351185) |
|
csp (0.322373) |
|
cly (0.241284) |
|
clu (0.239292) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
cag (0.151194) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
cty (0.936719) |
|
ill (0.351185) |
|
csp (0.322373) |
|
cly (0.241284) |
|
clu (0.239292) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
cag (0.151194) |
|
nca (0.136874) |
|
che (0.136314) |
|
pla (0.133672) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
