Ss1.1-Thy1-THY010052C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGGGCGGGCAAGATGGCGGCGCCCATGGAGCTGTTCTGCTGGTCAGGGGGCTGGGGGC TGCCGTCCGTGGACCTGGACAGTCTGGCCGTGCTGACCTATGCCAGATTTACTGGTGCCC CACTCAAGGTGCACAAGATCACCAACCCCTGGCGGAGCCCTTCAGGAACTCTGCCTGCCC TTCGGACCAGTCAAGGAGAAGTCATCTCGGTACCACACAAGATCATCACCCACCTTCGAA AAGAGAAATACAATGCCGATTATGATCTGTCAGCCCGGCAAGGGGCAGACACCTTGGCCT TCATGTCGCTGCTGGAGGAGAAGCTGCTCCCGGTGCTGATACATACTTTTTGGGTAGATG CCAAGAACTATGTGGAAGTGACTCGGAAGTGGTACGCAGAGGCCATGCCCTTTCCCCTCA ACTTCTTCCTGCCCGGCCGCATGCAGCGGCAGTACATGGAGCGGCTGCAGCTCTTGTGTG GGGAGCACAGGCCTGAGGAGGAGGAAGAGCTGGAGAAGGAGCTCTACCAGGAGGCTCGGG AATGCCTGACCCTTCTCTCTCAGCGCCTGGGCGCTCAGAAATTCTTCTTTGGAGATGCCC CCGCCTCCCTGGACGCCTTTGTCTTCAGCTACTTGGCCCTGCTGCAGCAGGCGAAGCTGC CCAGTGGGAAGCTGCAGGCCCACCTCCGGGGGCTGCACAACCTCTGTGCCTACTGCACCC ATATCCTCAGCCTCTACTTCCCCTGGGAGGGAGCTGAGGTGCCACGTCCACGCCAGACAC CAGCGAGCTCAGAGACTGAGGAGGAGCCATACCGGCGCCGGAACCAGATCCTATCCGTGT TGGCGGGGCTGGCAGCCATGGCGGGCTACGCCTTGCTCAGTGGCATTGTCTCCATTCAGC GGGCACCTCCTGCCCGGGCCCCAAGCACACGGGCCCTGGGCATGGCTGAGGAGGATGAAG AAGAATGACGTATATGCTCCCAGGACTGATTTTTTTACTGTCATGCATTCCAGGGGCCCC TCTGTTTCCCCGTTGTTGGTATGGCTGGAAATGTGGTGCCACCCCCAGAATAAACCTGCT CACAATGACGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGGGCGGGCAAGATGGCGGCGCCCATGGAGCTGTTCTGCTGGTCAGGGGGCTGGGGGC TGCCGTCCGTGGACCTGGACAGTCTGGCCGTGCTGACCTATGCCAGATTTACTGGTGCCC CACTCAAGGTGCACAAGATCACCAACCCCTGGCGGAGCCCTTCAGGAACTCTGCCTGCCC TTCGGACCAGTCAAGGAGAAGTCATCTCGGTACCACACAAGATCATCACCCACCTTCGAA AAGAGAAATACAATGCCGATTATGATCTGTCAGCCCGGCAAGGGGCAGACACCTTGGCCT TCATGTCGCTGCTGGAGGAGAAGCTGCTCCCGGTGCTGATACATACTTTTTGGGTAGATG CCAAGAACTATGTGGAAGTGACTCGGAAGTGGTACGCAGAGGCCATGCCCTTTCCCCTCA ACTTCTTCCTGCCCGGCCGCATGCAGCGGCAGTACATGGAGCGGCTGCAGCTCTTGTGTG GGGAGCACAGGCCTGAGGAGGAGGAAGAGCTGGAGAAGGAGCTCTACCAGGAGGCTCGGG AATGCCTGACCCTTCTCTCTCAGCGCCTGGGCGCTCAGAAATTCTTCTTTGGAGATGCCC CCGCCTCCCTGGACGCCTTTGTCTTCAGCTACTTGGCCCTGCTGCAGCAGGCGAAGCTGC CCAGTGGGAAGCTGCAGGCCCACCTCCGGGGGCTGCACAACCTCTGTGCCTACTGCACCC ATATCCTCAGCCTCTACTTCCCCTGGGAGGGAGCTGAGGTGCCACGTCCACGCCAGACAC CAGCGAGCTCAGAGACTGAGGAGGAGCCATACCGGCGCCGGAACCAGATCCTATCCGTGT TGGCGGGGCTGGCAGCCATGGCGGGCTACGCCTTGCTCAGTGGCATTGTCTCCATTCAGC GGGCACCTCCTGCCCGGGCCCCAAGCACACGGGCCCTGGGCATGGCTGAGGAGGATGAAG AAGAATGACGTATATGCTCCCAGGACTGATTTTTTTACTGTCATGCATTCCAGGGGCCCC TCTGTTTCCCCGTTGTTGGTATGGCTGGAAATGTGGTGCCACCCCCAGAATAAACCTGCT CACAATGACGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 404-521, + strand, RNAz p=0.710618 | |
| 600-762, - strand, RNAz p=0.82155 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 404-521, + strand, RNAz p=0.710618 | |
| 600-762, - strand, RNAz p=0.82155 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 329-521, gnl|bosTau2|chr3 (9277422-9277614) | |
| 329-521, gnl|canFam2|chr7 (45297101-45296956) | |
| 329-521, gnl|danRer3|chr19 (28313447-28313306) | |
| 329-521, gnl|dasNov1|scaffold_54181 (6125-5979) | |
| 329-521, gnl|echTel1|scaffold_312049 (172900-172756) | |
| 329-521, gnl|fr1|chrUn (92127915-92128032) | |
| 329-521, gnl|hg17|chr1 (151995215-151995361) | |
| 329-521, gnl|Hg17|chr1 (151995239-151995431) | |
| 329-521, gnl|loxAfr1|scaffold_5844 (39185-39039) | |
| 329-521, gnl|mm7|chr3 (89336889-89336748) | |
| 329-521, gnl|Mm7|chr3 (89336868-89336676) | |
| 329-521, gnl|monDom2|scaffold_59 (2499545-2499407) | |
| 329-521, gnl|oryCun1|scaffold_199674 (76588-76730) | |
| 329-521, gnl|panTro1|chr1 (133988882-133989028) | |
| 329-521, gnl|rheMac2|chr1 (133762342-133762488) | |
| 329-521, gnl|rn3|chr2 (23017926-23018052) | |
| 329-521, gnl|tetNig1|chr12 (2949118-2949001) | |
| 329-521, gnl|xenTro1|scaffold_2296 (7192-7038) | |
| 600-762, gnl|bosTau2|chr3 (9278251-9278413) | |
| 600-762, gnl|Hg17|chr1 (151996102-151996264) | |
| 600-762, gnl|Mm7|chr3 (89336068-89335906) | |
| 834-1089, gnl|bosTau2|chr3 (9278434-9278692) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 329-521, gnl|bosTau2|chr3 (9277422-9277614) | |
| 329-521, gnl|canFam2|chr7 (45297101-45296956) | |
| 329-521, gnl|danRer3|chr19 (28313447-28313306) | |
| 329-521, gnl|dasNov1|scaffold_54181 (6125-5979) | |
| 329-521, gnl|echTel1|scaffold_312049 (172900-172756) | |
| 329-521, gnl|fr1|chrUn (92127915-92128032) | |
| 329-521, gnl|hg17|chr1 (151995215-151995361) | |
| 329-521, gnl|Hg17|chr1 (151995239-151995431) | |
| 329-521, gnl|loxAfr1|scaffold_5844 (39185-39039) | |
| 329-521, gnl|mm7|chr3 (89336889-89336748) | |
| 329-521, gnl|Mm7|chr3 (89336868-89336676) | |
| 329-521, gnl|monDom2|scaffold_59 (2499545-2499407) | |
| 329-521, gnl|oryCun1|scaffold_199674 (76588-76730) | |
| 329-521, gnl|panTro1|chr1 (133988882-133989028) | |
| 329-521, gnl|rheMac2|chr1 (133762342-133762488) | |
| 329-521, gnl|rn3|chr2 (23017926-23018052) | |
| 329-521, gnl|tetNig1|chr12 (2949118-2949001) | |
| 329-521, gnl|xenTro1|scaffold_2296 (7192-7038) | |
| 600-762, gnl|bosTau2|chr3 (9278251-9278413) | |
| 600-762, gnl|Hg17|chr1 (151996102-151996264) | |
| 600-762, gnl|Mm7|chr3 (89336068-89335906) | |
| 834-1089, gnl|bosTau2|chr3 (9278434-9278692) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) |