Non-Coding RNA Search

Ss1.1-Thy1-THY010052D09.5

Sequence:


               
               CTCAGTGGCAGAGGCACATTCTCTGGGCTGACTAAATCATGATACTAATTTTTCAATCCC
ATCCTCCAATTATGCAAAGGATTTTGTTGAAATTCAGCTGGTAAATTTCCATCTTCCCCG
ATGTCAATCAGTTTTTCATGCAAACTAATCAAGTGTTGCATTTTTTATATTTTTAACAAA
TGGGTTCAAAATCCACTGAAATGTTCATTTTTTAAAATAAGTCTTACTGGGAGTTCCCGT
GGTGGCTCATGGTTCCTAGTCGGATTCGTTTCTGCTGAGCCACGACAGGAACTCCTGTGA
TCCCAGTTTTCTGGAGACACCGAGGCACAAGGAGGGTGGATAGCTTCCTGCAAGTGGCGG
CCTTGACATTGGGACCTGAGCTTCTCTAACTCCAAAGCCCATGTTCTTTCACAGGTGCTG
AGTCAGGAAGACAAATGAAGGCCTGGATTTGGGGGGTGGGGGTGCTGGGTGCAGGAGGTG
CTGTCTGTGACCCTCCTGGTTGGGCGTTCGCAGAGGGATGCGGGATGGGACAAGAAATGT
GTTTGAAATTTTTCCTCCCCAATCATGATTCAATCACGATCCTCCTCCTGTGTATGATTC
GTGATGGTCTGTAACGTGAGTACAGAGACCCAGGGTTGAGGTCAAGAGAAGGCTCCAGGG
CGGTGCTGGCCATGGCATCATCCAGGGGCTAAATTCAGGAGAACTGCTCCAGCGCCCGCG
TCTTGCCCCCCATCCATAGCAAATGGCACATCTGAAATACGAAGCCGGTAGGAGGCAGGC
TCCCAAGGGCCGCACAGCAGGAGGTGCTTCGATCCTTCTGCTTCTAGAACTTTCTTAGCG
ACTTGTCATGGCTCCACGCCTAACAATTAACATCTAGCTCCAGCTTCTCATCTCCCTTCT
TCCCTGCGGACTCTCGTTCCTGTTCCAGGCCCTCAGACTGAACCTGATTGGGTGGAAATG
AGTGATATTAAACTCCTAGAGGGCCCTTTTCAGCTCATTCCTTCGTATTAAACTTGACAT
TGACTCTGAGCTGAAGGGGGAGTACCTGTGGCCTGGTTATTGTCATGCCTGCTGAGTGGG
AATGACAGGCTTTGCACCAGGCTGGCCTGGGAAGGCTGGAGAGCCGCGGTGGTGTTTTAT
TGGTGGGAGAGGAGGCTGGGAGCTGGGAGCGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGTGGCAGAGGCACATTCTCTGGGCTGACTAAATCATGATACTAATTTTTCAATCCC
ATCCTCCAATTATGCAAAGGATTTTGTTGAAATTCAGCTGGTAAATTTCCATCTTCCCCG
ATGTCAATCAGTTTTTCATGCAAACTAATCAAGTGTTGCATTTTTTATATTTTTAACAAA
TGGGTTCAAAATCCACTGAAATGTTCATTTTTTAAAATAAGTCTTACTGGGAGTTCCCGT
GGTGGCTCATGGTTCCTAGTCGGATTCGTTTCTGCTGAGCCACGACAGGAACTCCTGTGA
TCCCAGTTTTCTGGAGACACCGAGGCACAAGGAGGGTGGATAGCTTCCTGCAAGTGGCGG
CCTTGACATTGGGACCTGAGCTTCTCTAACTCCAAAGCCCATGTTCTTTCACAGGTGCTG
AGTCAGGAAGACAAATGAAGGCCTGGATTTGGGGGGTGGGGGTGCTGGGTGCAGGAGGTG
CTGTCTGTGACCCTCCTGGTTGGGCGTTCGCAGAGGGATGCGGGATGGGACAAGAAATGT
GTTTGAAATTTTTCCTCCCCAATCATGATTCAATCACGATCCTCCTCCTGTGTATGATTC
GTGATGGTCTGTAACGTGAGTACAGAGACCCAGGGTTGAGGTCAAGAGAAGGCTCCAGGG
CGGTGCTGGCCATGGCATCATCCAGGGGCTAAATTCAGGAGAACTGCTCCAGCGCCCGCG
TCTTGCCCCCCATCCATAGCAAATGGCACATCTGAAATACGAAGCCGGTAGGAGGCAGGC
TCCCAAGGGCCGCACAGCAGGAGGTGCTTCGATCCTTCTGCTTCTAGAACTTTCTTAGCG
ACTTGTCATGGCTCCACGCCTAACAATTAACATCTAGCTCCAGCTTCTCATCTCCCTTCT
TCCCTGCGGACTCTCGTTCCTGTTCCAGGCCCTCAGACTGAACCTGATTGGGTGGAAATG
AGTGATATTAAACTCCTAGAGGGCCCTTTTCAGCTCATTCCTTCGTATTAAACTTGACAT
TGACTCTGAGCTGAAGGGGGAGTACCTGTGGCCTGGTTATTGTCATGCCTGCTGAGTGGG
AATGACAGGCTTTGCACCAGGCTGGCCTGGGAAGGCTGGAGAGCCGCGGTGGTGTTTTAT
TGGTGGGAGAGGAGGCTGGGAGCTGGGAGCGAGCAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-198, - strand, RNAz p=0.993183
               

               
               75-213, - strand, RNAz p=0.997918
               

               
               1042-1174, + strand, RNAz p=0.938179

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-198, - strand, RNAz p=0.993183
               

               
               75-213, - strand, RNAz p=0.997918
               

               
               1042-1174, + strand, RNAz p=0.938179

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               122-227, - strand, RNAmicro p=0.913861

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               122-227, - strand, RNAmicro p=0.913861

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               1-198, BP161550 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP161550.1|), blast E-value=0, identity=100% 
               

               
               1-198, BP163944 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP163944.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-198, BP161550 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP161550.1|), blast E-value=0, identity=100% 
               

               
               1-198, BP163944 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP163944.1|), blast E-value=0, identity=100%

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-213, gnl|bosTau2|chr19 (4022300-4022089)
               

               
               1-213, gnl|canFam2|chr9 (35638476-35639142)
               

               
               1-213, gnl|dasNov1|scaffold_804 (86918-86302)
               

               
               1-213, gnl|hg17|chr17 (53014649-53015240)
               

               
               1-213, gnl|Hg17|chr17 (53014968-53015180)
               

               
               1-213, gnl|Mm7|chr11 (88497422-88497194)
               

               
               1-213, gnl|oryCun1|scaffold_210284 (321312-321852)
               

               
               1-213, gnl|panTro1|chr19_random (38750346-38750940)
               

               
               1-213, gnl|rheMac2|chr16 (41808060-41808656)
               

               
               1-213, gnl|rn3|chr10 (76877424-76876770)
               


               
               624-1174, gnl|bosTau2|chr19 (4036642-4036101)
               

               
               624-1174, gnl|Hg17|chr17 (53000702-53001262)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-213, gnl|bosTau2|chr19 (4022300-4022089)
               

               
               1-213, gnl|canFam2|chr9 (35638476-35639142)
               

               
               1-213, gnl|dasNov1|scaffold_804 (86918-86302)
               

               
               1-213, gnl|hg17|chr17 (53014649-53015240)
               

               
               1-213, gnl|Hg17|chr17 (53014968-53015180)
               

               
               1-213, gnl|Mm7|chr11 (88497422-88497194)
               

               
               1-213, gnl|oryCun1|scaffold_210284 (321312-321852)
               

               
               1-213, gnl|panTro1|chr19_random (38750346-38750940)
               

               
               1-213, gnl|rheMac2|chr16 (41808060-41808656)
               

               
               1-213, gnl|rn3|chr10 (76877424-76876770)
               


               
               624-1174, gnl|bosTau2|chr19 (4036642-4036101)
               

               
               624-1174, gnl|Hg17|chr17 (53000702-53001262)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-198, - strand, RNAz p=0.993183
	75-213, - strand, RNAz p=0.997918
	1042-1174, + strand, RNAz p=0.938179

	1-198, BP161550 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP161550.1\|), blast E-value=0, identity=100%
	1-198, BP163944 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP163944.1\|), blast E-value=0, identity=100%

	1-213, gnl\|bosTau2\|chr19 (4022300-4022089)
	1-213, gnl\|canFam2\|chr9 (35638476-35639142)
	1-213, gnl\|dasNov1\|scaffold_804 (86918-86302)
	1-213, gnl\|hg17\|chr17 (53014649-53015240)
	1-213, gnl\|Hg17\|chr17 (53014968-53015180)
	1-213, gnl\|Mm7\|chr11 (88497422-88497194)
	1-213, gnl\|oryCun1\|scaffold_210284 (321312-321852)
	1-213, gnl\|panTro1\|chr19_random (38750346-38750940)
	1-213, gnl\|rheMac2\|chr16 (41808060-41808656)
	1-213, gnl\|rn3\|chr10 (76877424-76876770)

	624-1174, gnl\|bosTau2\|chr19 (4036642-4036101)
	624-1174, gnl\|Hg17\|chr17 (53000702-53001262)