Ss1.1-Thy1-THY010052G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCCTCACCTTCTTTGGATTCCTAGCTAGGCGCCAGTTTCGGCTCTGTTGCACGACT GGCAGCTGCGAGAAGAGTCCAGCTGGGCAGTTTAGATTTGCTGCAACTCCATGAGCTCCT GAAGCGGAGACGGTGGGAAGCGTTAGGCTTGCGCCAGCTCGAGCAAGCTTCGGCCCCCGG TTTCCCTAGGACGCGTCACACTAGGATATCCCAGCAGACATCCTCAGCCTCGTTGGATTC TCCCGGAAGAGCAAAAAGGAAAATGGCCTTCTCAGAGATCACCTCGCCTTCAAAGAGGTC TCAGCATTATGGGCCTCTGACCTTATCTCCAGCTCTGAAAGCCCCAGAGAAAACTGGAAA GATTCAACCCTCTTGTGCCAAAGATGACAAGAAAGCTTCACCAGATTGTCGCATGATCCT GAGAATGCGACCCCCAGCTTTGAAAACAGAGACTAGTGAAGAAAGAACCCTTAGCCCCAC CATGGGGGGATGGAAATCCTCGGTGGAGCCGTATGTGATTCTGAAACCAGTAAACATCAA AAACAGGGAGGCCAAAGGACCAGAAGTTCAGGACGAAGCTACCTCTACTCCCCATCGTGT CCGCAGACAGAGCTCTCTTTTGACTTTGGATCGGATTAGGCAGCAGCTAATTGTGTTTGG ACTATGAGCCAAATATACATGTCATGTGAGGTGAGAAAGGGAGAAATCTTGGTCTAGGAA GAAGCTAAGGAATTCACCACCTCTCTTCTTTTTACCTCCCAGGAGAACTCTCAGCAGTGT GTCCAGGAACCCGAGCTCTTCCTTGAAGTCATCCATTTCTGAGACGTGTTCTCTCTTTTG AATACAGCCTGGGCCTAGAACACCAAGTCATGCCACTCCTCAGATCCGCAGCCGAAACCT AGCCCCCCAGGAGCCCACCAACGTGCTGGAGGAGGCCCGGCTAAGGCTGCATGTTTCTGC TGTACCTGAGTCGCTTCCTTGTCGGGAACAGGAATTCCAAGACATCTACAACTTTGTGGA AAGCAAACTCCTTAACCGTACTGGAGGGTGCATGTACATCTCCGGGGTCCCCGGAACAGG GAAGACTGCCACTGTGCACGAGGTGATACGCTGCCTGCAGCAGGCGGCCCGAGCAAATGA CCTTCCTCCCTTTCAATACGTTGAGGTCAACGGCATGAAGCTGACGGAGCCCCACCAGGT CTACGTGCAAATCTTGCAGAAGCTGACAGGTCAAAAGGCAACAACTAACCATGCAGCAGA ACTGCTGGCAAAACGATTCTGCACCCAAGGGGCCTCTCAGGAAACCACTGTGCTGCTTGT AGATGAGCTCGACCTTTTGTGGACCCAGAAACAAGACGTGATGTACAATCTGTTTGACTG GCCCACTCACAAGAAGGCCCGGCTTGTGGTCCTGACCATTGCCAACACCATGGACCTGCC AGAGCGCATCATGATGAACCGGGTGTCCAGCCGGCTGGGTCTAACCAGGATGTTCTTCCA GCCCTATACTTACAGCCAGTTGCAACAGATCCTGCTGTCCCGACTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCCTCACCTTCTTTGGATTCCTAGCTAGGCGCCAGTTTCGGCTCTGTTGCACGACT GGCAGCTGCGAGAAGAGTCCAGCTGGGCAGTTTAGATTTGCTGCAACTCCATGAGCTCCT GAAGCGGAGACGGTGGGAAGCGTTAGGCTTGCGCCAGCTCGAGCAAGCTTCGGCCCCCGG TTTCCCTAGGACGCGTCACACTAGGATATCCCAGCAGACATCCTCAGCCTCGTTGGATTC TCCCGGAAGAGCAAAAAGGAAAATGGCCTTCTCAGAGATCACCTCGCCTTCAAAGAGGTC TCAGCATTATGGGCCTCTGACCTTATCTCCAGCTCTGAAAGCCCCAGAGAAAACTGGAAA GATTCAACCCTCTTGTGCCAAAGATGACAAGAAAGCTTCACCAGATTGTCGCATGATCCT GAGAATGCGACCCCCAGCTTTGAAAACAGAGACTAGTGAAGAAAGAACCCTTAGCCCCAC CATGGGGGGATGGAAATCCTCGGTGGAGCCGTATGTGATTCTGAAACCAGTAAACATCAA AAACAGGGAGGCCAAAGGACCAGAAGTTCAGGACGAAGCTACCTCTACTCCCCATCGTGT CCGCAGACAGAGCTCTCTTTTGACTTTGGATCGGATTAGGCAGCAGCTAATTGTGTTTGG ACTATGAGCCAAATATACATGTCATGTGAGGTGAGAAAGGGAGAAATCTTGGTCTAGGAA GAAGCTAAGGAATTCACCACCTCTCTTCTTTTTACCTCCCAGGAGAACTCTCAGCAGTGT GTCCAGGAACCCGAGCTCTTCCTTGAAGTCATCCATTTCTGAGACGTGTTCTCTCTTTTG AATACAGCCTGGGCCTAGAACACCAAGTCATGCCACTCCTCAGATCCGCAGCCGAAACCT AGCCCCCCAGGAGCCCACCAACGTGCTGGAGGAGGCCCGGCTAAGGCTGCATGTTTCTGC TGTACCTGAGTCGCTTCCTTGTCGGGAACAGGAATTCCAAGACATCTACAACTTTGTGGA AAGCAAACTCCTTAACCGTACTGGAGGGTGCATGTACATCTCCGGGGTCCCCGGAACAGG GAAGACTGCCACTGTGCACGAGGTGATACGCTGCCTGCAGCAGGCGGCCCGAGCAAATGA CCTTCCTCCCTTTCAATACGTTGAGGTCAACGGCATGAAGCTGACGGAGCCCCACCAGGT CTACGTGCAAATCTTGCAGAAGCTGACAGGTCAAAAGGCAACAACTAACCATGCAGCAGA ACTGCTGGCAAAACGATTCTGCACCCAAGGGGCCTCTCAGGAAACCACTGTGCTGCTTGT AGATGAGCTCGACCTTTTGTGGACCCAGAAACAAGACGTGATGTACAATCTGTTTGACTG GCCCACTCACAAGAAGGCCCGGCTTGTGGTCCTGACCATTGCCAACACCATGGACCTGCC AGAGCGCATCATGATGAACCGGGTGTCCAGCCGGCTGGGTCTAACCAGGATGTTCTTCCA GCCCTATACTTACAGCCAGTTGCAACAGATCCTGCTGTCCCGACTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 258-374, - strand, RNAz p=0.563302 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 258-374, - strand, RNAz p=0.563302 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 179-547, gnl|bosTau2|chr3 (63060244-63060615) | |
| 179-547, gnl|Hg17|chr1 (52571491-52571135) | |
| 179-547, gnl|Mm7|chr4 (107973574-107973918) | |
| 829-946, gnl|bosTau2|chr3 (63069367-63069484) | |
| 829-946, gnl|canFam2|chr15 (11993269-11993153) | |
| 829-946, gnl|dasNov1|scaffold_26661 (5372-5256) | |
| 829-946, gnl|fr1|chrUn (190536807-190536905) | |
| 829-946, gnl|galGal2|chr8 (24629713-24629833) | |
| 829-946, gnl|hg17|chr1 (52563538-52563654) | |
| 829-946, gnl|Hg17|chr1 (52563653-52563544) | |
| 829-946, gnl|mm7|chr4 (107978500-107978385) | |
| 829-946, gnl|Mm7|chr4 (107978379-107978493) | |
| 829-946, gnl|monDom2|scaffold_70 (1310789-1310692) | |
| 829-946, gnl|oryCun1|scaffold_178073 (52801-52685) | |
| 829-946, gnl|panTro1|chr1 (50784191-50784307) | |
| 829-946, gnl|rheMac2|chr1 (55220874-55220990) | |
| 829-946, gnl|rn3|chr5 (129898814-129898698) | |
| 829-946, gnl|tetNig1|chrUn_random (117754399-117754493) | |
| 829-946, gnl|xenTro1|scaffold_197 (230352-230459) | |
| 1047-1219, gnl|bosTau2|chr3 (63072433-63072605) | |
| 1047-1219, gnl|Hg17|chr1 (52562415-52562243) | |
| 1047-1219, gnl|Mm7|chr4 (107980403-107980575) | |
| 1326-1478, gnl|bosTau2|chr3 (63073654-63073806) | |
| 1326-1478, gnl|canFam2|chr15 (11995964-11995789) | |
| 1326-1478, gnl|danRer3|chrUn (17039327-17039495) | |
| 1326-1478, gnl|dasNov1|scaffold_26661 (8274-8100) | |
| 1326-1478, gnl|echTel1|scaffold_268956 (5289-5465) | |
| 1326-1478, gnl|fr1|chrUn (190535865-190536038) | |
| 1326-1478, gnl|galGal2|chr8 (24627193-24627350) | |
| 1326-1478, gnl|hg17|chr1 (52561109-52561285) | |
| 1326-1478, gnl|Hg17|chr1 (52561264-52561112) | |
| 1326-1478, gnl|loxAfr1|scaffold_66147 (7854-8005) | |
| 1326-1478, gnl|mm7|chr4 (107982122-107981949) | |
| 1326-1478, gnl|Mm7|chr4 (107981965-107982117) | |
| 1326-1478, gnl|monDom2|scaffold_70 (1312679-1312511) | |
| 1326-1478, gnl|oryCun1|scaffold_178073 (55748-55572) | |
| 1326-1478, gnl|panTro1|chr1 (50781765-50781941) | |
| 1326-1478, gnl|rheMac2|chr1 (55218437-55218613) | |
| 1326-1478, gnl|rn3|chr5 (129901470-129901298) | |
| 1326-1478, gnl|tetNig1|chrUn_random (117753534-117753707) | |
| 1326-1478, gnl|xenTro1|scaffold_197 (226450-226639) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-547, gnl|bosTau2|chr3 (63060244-63060615) | |
| 179-547, gnl|Hg17|chr1 (52571491-52571135) | |
| 179-547, gnl|Mm7|chr4 (107973574-107973918) | |
| 829-946, gnl|bosTau2|chr3 (63069367-63069484) | |
| 829-946, gnl|canFam2|chr15 (11993269-11993153) | |
| 829-946, gnl|dasNov1|scaffold_26661 (5372-5256) | |
| 829-946, gnl|fr1|chrUn (190536807-190536905) | |
| 829-946, gnl|galGal2|chr8 (24629713-24629833) | |
| 829-946, gnl|hg17|chr1 (52563538-52563654) | |
| 829-946, gnl|Hg17|chr1 (52563653-52563544) | |
| 829-946, gnl|mm7|chr4 (107978500-107978385) | |
| 829-946, gnl|Mm7|chr4 (107978379-107978493) | |
| 829-946, gnl|monDom2|scaffold_70 (1310789-1310692) | |
| 829-946, gnl|oryCun1|scaffold_178073 (52801-52685) | |
| 829-946, gnl|panTro1|chr1 (50784191-50784307) | |
| 829-946, gnl|rheMac2|chr1 (55220874-55220990) | |
| 829-946, gnl|rn3|chr5 (129898814-129898698) | |
| 829-946, gnl|tetNig1|chrUn_random (117754399-117754493) | |
| 829-946, gnl|xenTro1|scaffold_197 (230352-230459) | |
| 1047-1219, gnl|bosTau2|chr3 (63072433-63072605) | |
| 1047-1219, gnl|Hg17|chr1 (52562415-52562243) | |
| 1047-1219, gnl|Mm7|chr4 (107980403-107980575) | |
| 1326-1478, gnl|bosTau2|chr3 (63073654-63073806) | |
| 1326-1478, gnl|canFam2|chr15 (11995964-11995789) | |
| 1326-1478, gnl|danRer3|chrUn (17039327-17039495) | |
| 1326-1478, gnl|dasNov1|scaffold_26661 (8274-8100) | |
| 1326-1478, gnl|echTel1|scaffold_268956 (5289-5465) | |
| 1326-1478, gnl|fr1|chrUn (190535865-190536038) | |
| 1326-1478, gnl|galGal2|chr8 (24627193-24627350) | |
| 1326-1478, gnl|hg17|chr1 (52561109-52561285) | |
| 1326-1478, gnl|Hg17|chr1 (52561264-52561112) | |
| 1326-1478, gnl|loxAfr1|scaffold_66147 (7854-8005) | |
| 1326-1478, gnl|mm7|chr4 (107982122-107981949) | |
| 1326-1478, gnl|Mm7|chr4 (107981965-107982117) | |
| 1326-1478, gnl|monDom2|scaffold_70 (1312679-1312511) | |
| 1326-1478, gnl|oryCun1|scaffold_178073 (55748-55572) | |
| 1326-1478, gnl|panTro1|chr1 (50781765-50781941) | |
| 1326-1478, gnl|rheMac2|chr1 (55218437-55218613) | |
| 1326-1478, gnl|rn3|chr5 (129901470-129901298) | |
| 1326-1478, gnl|tetNig1|chrUn_random (117753534-117753707) | |
| 1326-1478, gnl|xenTro1|scaffold_197 (226450-226639) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) |