Ss1.1-Thy1-THY010053C10.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGAGA GCCACAGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGAGTGATCAGCAGCTG GACTGTGCCTTGGACTTGATGAGGCGCCTGCCTCCACAGCAAATCGAGAAAAACCTCAGC GACCTGATCGACCTGGTCCCCAGTCTATGTGAAGATCTCCTGTCTTCTGTCGACCAGCCA CTGAAAATCGCTAGAGACAAGGTGGTGGGGAAGGATTACCTTTTGTGCGACTACAACAGA GATGGGGACTCCTACAGGTCACCGTGGAGTAACAAGTATGACCCTCCCTTGGAAGATGGG GCCATGCCTTCTGCTCGGCTGAGAAAGCTGGAGGTGGAAGCCAACAATGCCTTTGACCAG TACCGAGACCTGTATTTTGAAGGCGGTGTCTCATCTGTCTACCTCTGGGATCTGGATCAC GGTTTCGCTGGCGTGATCCTCATAAAGAAGGCTGGAGACGGATCAAAGAAGATCAAAGGC TGCTGGGATTCCATCCACGTGGTGGAAGTGCAGGAGAAGTCCAGCGGTCGCACCGCGCAT TACAAGCTGACCTCCACGGTGATGCTGTGGCTGCAAACCAACAAATCTGGCTCTGGCACC ATGAACCTCGGAGGAAGCCTTACCAGACAGATGGAGAAGGATGAGACTGTGAGCGACTGC TCCCCGCACATAGCCAACATCGGGCGCCTGGTAGAGGACATGGAAAATAAAATCAGAAGT ACGCTGAATGAGATCTACTTTGGAAAGACGAAGGACATCGTCAACGGGCTGAGGTCTGTG CAGACTTTTGCAGACAAATCAAAACAAGAAGCTCTTAAGAACGACCTGGTGGAGGCTTTG AAGAGAAAGCAGCAGTGTTAAGCCTCTGCTTCCCACTAACCGGACACGCCCGCCGTGCGC TCCTTAGATTCCTTTCTTAGAAACTTGTTTTCTGCTCCCTCCCTCGAACCTCCCCTCCCC GACAGGTCAGTGACAACTCGCATCACCACCGCACAGCGCCATCTCTCCCTGAGAATAAAC CCAGTGAATCCCGTCTTGTCTCCGAGGCCTACTCCCCCCCCCACTTTTTGCTATCAGAAC TCTCCGTATTTCCATAGAGACCTTGTTTTCGTTTGCCCCGCCCCCCCCCCACCACCACCC ATTTATAGGCATAAAATACACTGTCTGCCTCCCTTCCCTCCCACCTTTTTGTTACATTGG TGTAAAAAATGTAAAACAAAAAAATTTTATGAAATAACTGTGGTGTGTGAAAGATAGAAG CAAAACTGGAAATCTGATTCCACGTGTGTTTGGGAGTTGCTTGGGGTTGGGGGGGGACAG GGCACGGCTCTGGGAGAAAGGAGAGGTGGCCCTCAGCATCGTCCAGCAAGCCTGGCCCCT GTCCCGCGGAGACCACGAGGTGGGGGGGCGGGGGCGGGACCTGCGGACCGTCCTGCTCTT CTGGCCAGGTGCTTTTCTGTCCATTTTTATGGAATGCAAAAGGAGTTTTTGTTTTATTTT GCATTCCATAAAAATGGACAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGAGA GCCACAGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGAGTGATCAGCAGCTG GACTGTGCCTTGGACTTGATGAGGCGCCTGCCTCCACAGCAAATCGAGAAAAACCTCAGC GACCTGATCGACCTGGTCCCCAGTCTATGTGAAGATCTCCTGTCTTCTGTCGACCAGCCA CTGAAAATCGCTAGAGACAAGGTGGTGGGGAAGGATTACCTTTTGTGCGACTACAACAGA GATGGGGACTCCTACAGGTCACCGTGGAGTAACAAGTATGACCCTCCCTTGGAAGATGGG GCCATGCCTTCTGCTCGGCTGAGAAAGCTGGAGGTGGAAGCCAACAATGCCTTTGACCAG TACCGAGACCTGTATTTTGAAGGCGGTGTCTCATCTGTCTACCTCTGGGATCTGGATCAC GGTTTCGCTGGCGTGATCCTCATAAAGAAGGCTGGAGACGGATCAAAGAAGATCAAAGGC TGCTGGGATTCCATCCACGTGGTGGAAGTGCAGGAGAAGTCCAGCGGTCGCACCGCGCAT TACAAGCTGACCTCCACGGTGATGCTGTGGCTGCAAACCAACAAATCTGGCTCTGGCACC ATGAACCTCGGAGGAAGCCTTACCAGACAGATGGAGAAGGATGAGACTGTGAGCGACTGC TCCCCGCACATAGCCAACATCGGGCGCCTGGTAGAGGACATGGAAAATAAAATCAGAAGT ACGCTGAATGAGATCTACTTTGGAAAGACGAAGGACATCGTCAACGGGCTGAGGTCTGTG CAGACTTTTGCAGACAAATCAAAACAAGAAGCTCTTAAGAACGACCTGGTGGAGGCTTTG AAGAGAAAGCAGCAGTGTTAAGCCTCTGCTTCCCACTAACCGGACACGCCCGCCGTGCGC TCCTTAGATTCCTTTCTTAGAAACTTGTTTTCTGCTCCCTCCCTCGAACCTCCCCTCCCC GACAGGTCAGTGACAACTCGCATCACCACCGCACAGCGCCATCTCTCCCTGAGAATAAAC CCAGTGAATCCCGTCTTGTCTCCGAGGCCTACTCCCCCCCCCACTTTTTGCTATCAGAAC TCTCCGTATTTCCATAGAGACCTTGTTTTCGTTTGCCCCGCCCCCCCCCCACCACCACCC ATTTATAGGCATAAAATACACTGTCTGCCTCCCTTCCCTCCCACCTTTTTGTTACATTGG TGTAAAAAATGTAAAACAAAAAAATTTTATGAAATAACTGTGGTGTGTGAAAGATAGAAG CAAAACTGGAAATCTGATTCCACGTGTGTTTGGGAGTTGCTTGGGGTTGGGGGGGGACAG GGCACGGCTCTGGGAGAAAGGAGAGGTGGCCCTCAGCATCGTCCAGCAAGCCTGGCCCCT GTCCCGCGGAGACCACGAGGTGGGGGGGCGGGGGCGGGACCTGCGGACCGTCCTGCTCTT CTGGCCAGGTGCTTTTCTGTCCATTTTTATGGAATGCAAAAGGAGTTTTTGTTTTATTTT GCATTCCATAAAAATGGACAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 192-319, + strand, RNAz p=0.809039 | |
| 1227-1342, - strand, RNAz p=0.652 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 192-319, + strand, RNAz p=0.809039 | |
| 1227-1342, - strand, RNAz p=0.652 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 192-319, gnl|bosTau2|chr2 (61294008-61293881) | |
| 192-319, gnl|canFam2|chr2 (82167004-82166871) | |
| 192-319, gnl|danRer3|chrUn (14074396-14074526) | |
| 192-319, gnl|dasNov1|scaffold_169964 (4218-4353) | |
| 192-319, gnl|echTel1|scaffold_318678 (50294-50429) | |
| 192-319, gnl|fr1|chrUn (46173602-46173737) | |
| 192-319, gnl|galGal2|chr21 (4541923-4542057) | |
| 192-319, gnl|hg17|chr1 (19457296-19457431) | |
| 192-319, gnl|Hg17|chr1 (19457430-19457303) | |
| 192-319, gnl|loxAfr1|scaffold_47310 (6170-6035) | |
| 192-319, gnl|mm7|chr4 (138635832-138635699) | |
| 192-319, gnl|Mm7|chr4 (138635698-138635825) | |
| 192-319, gnl|monDom2|scaffold_90 (479519-479654) | |
| 192-319, gnl|panTro1|chr1 (19750427-19750562) | |
| 192-319, gnl|rheMac2|chr1 (22041369-22041504) | |
| 192-319, gnl|rn3|chr5 (158056435-158056302) | |
| 192-319, gnl|tetNig1|chr11 (5836100-5835967) | |
| 192-319, gnl|xenTro1|scaffold_888 (345654-345516) | |
| 432-574, gnl|bosTau2|chr2 (61271937-61271795) | |
| 432-574, gnl|canFam2|chr2 (82190438-82190287) | |
| 432-574, gnl|danRer3|chrUn (14073747-14073897) | |
| 432-574, gnl|dasNov1|scaffold_8884 (47290-47139) | |
| 432-574, gnl|echTel1|scaffold_318678 (17209-17360) | |
| 432-574, gnl|fr1|chrUn (46172718-46172867) | |
| 432-574, gnl|galGal2|chr21 (4523727-4523878) | |
| 432-574, gnl|hg17|chr1 (19429220-19429371) | |
| 432-574, gnl|Hg17|chr1 (19429363-19429221) | |
| 432-574, gnl|loxAfr1|scaffold_1127 (89260-89109) | |
| 432-574, gnl|mm7|chr4 (138658582-138658431) | |
| 432-574, gnl|Mm7|chr4 (138658437-138658579) | |
| 432-574, gnl|monDom2|scaffold_90 (446006-446158) | |
| 432-574, gnl|oryCun1|scaffold_89561 (2093-1942) | |
| 432-574, gnl|panTro1|chr1 (19722129-19722280) | |
| 432-574, gnl|rheMac2|chr1 (22011902-22012053) | |
| 432-574, gnl|rn3|chr5 (158079081-158078930) | |
| 432-574, gnl|tetNig1|chr11 (5836764-5836618) | |
| 432-574, gnl|xenTro1|scaffold_888 (349726-349575) | |
| 832-1417, gnl|bosTau2|chr2 (61255074-61254462) | |
| 832-1417, gnl|Hg17|chr1 (19411419-19410786) | |
| 832-1417, gnl|Mm7|chr4 (138669442-138670023) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 192-319, gnl|bosTau2|chr2 (61294008-61293881) | |
| 192-319, gnl|canFam2|chr2 (82167004-82166871) | |
| 192-319, gnl|danRer3|chrUn (14074396-14074526) | |
| 192-319, gnl|dasNov1|scaffold_169964 (4218-4353) | |
| 192-319, gnl|echTel1|scaffold_318678 (50294-50429) | |
| 192-319, gnl|fr1|chrUn (46173602-46173737) | |
| 192-319, gnl|galGal2|chr21 (4541923-4542057) | |
| 192-319, gnl|hg17|chr1 (19457296-19457431) | |
| 192-319, gnl|Hg17|chr1 (19457430-19457303) | |
| 192-319, gnl|loxAfr1|scaffold_47310 (6170-6035) | |
| 192-319, gnl|mm7|chr4 (138635832-138635699) | |
| 192-319, gnl|Mm7|chr4 (138635698-138635825) | |
| 192-319, gnl|monDom2|scaffold_90 (479519-479654) | |
| 192-319, gnl|panTro1|chr1 (19750427-19750562) | |
| 192-319, gnl|rheMac2|chr1 (22041369-22041504) | |
| 192-319, gnl|rn3|chr5 (158056435-158056302) | |
| 192-319, gnl|tetNig1|chr11 (5836100-5835967) | |
| 192-319, gnl|xenTro1|scaffold_888 (345654-345516) | |
| 432-574, gnl|bosTau2|chr2 (61271937-61271795) | |
| 432-574, gnl|canFam2|chr2 (82190438-82190287) | |
| 432-574, gnl|danRer3|chrUn (14073747-14073897) | |
| 432-574, gnl|dasNov1|scaffold_8884 (47290-47139) | |
| 432-574, gnl|echTel1|scaffold_318678 (17209-17360) | |
| 432-574, gnl|fr1|chrUn (46172718-46172867) | |
| 432-574, gnl|galGal2|chr21 (4523727-4523878) | |
| 432-574, gnl|hg17|chr1 (19429220-19429371) | |
| 432-574, gnl|Hg17|chr1 (19429363-19429221) | |
| 432-574, gnl|loxAfr1|scaffold_1127 (89260-89109) | |
| 432-574, gnl|mm7|chr4 (138658582-138658431) | |
| 432-574, gnl|Mm7|chr4 (138658437-138658579) | |
| 432-574, gnl|monDom2|scaffold_90 (446006-446158) | |
| 432-574, gnl|oryCun1|scaffold_89561 (2093-1942) | |
| 432-574, gnl|panTro1|chr1 (19722129-19722280) | |
| 432-574, gnl|rheMac2|chr1 (22011902-22012053) | |
| 432-574, gnl|rn3|chr5 (158079081-158078930) | |
| 432-574, gnl|tetNig1|chr11 (5836764-5836618) | |
| 432-574, gnl|xenTro1|scaffold_888 (349726-349575) | |
| 832-1417, gnl|bosTau2|chr2 (61255074-61254462) | |
| 832-1417, gnl|Hg17|chr1 (19411419-19410786) | |
| 832-1417, gnl|Mm7|chr4 (138669442-138670023) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ese (0.379507) | |
| csp (0.322373) | |
| cty (0.31224) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ese (0.379507) | |
| csp (0.322373) | |
| cty (0.31224) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) |