Ss1.1-Thy1-THY010053D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTAGAGGAAGTGGCGCCTTAGGGTCCCGTGGCCGCAGCGCCGTTACTACTTCTCTGAA TCTCCACTCGGCTGCTTGCCGAGACACTCCGCCGCCAAGATGCCTCGAATTATGATCAAG GGGGGTGTGTGGAGGAATACCGAGGATGAAATTTTGAAAGCAGCGGTAATGAAATATGGA AAAAACCAGTGGTCTAGGATTGCCTCACTGCTGCATAGAAAATCAGCCAAGCAGTGCAAA GCCAGATGGTATGAGTGGTTGGATCCAAGCATTAAGAAAACAGAATGGTCCAGAGAAGAA GAGGAAAAACTGTTGCACTTGGCCAAGTTGATGCCAACTCAGTGGAGGACCATCGCTCCA ATCATTGGAAGAACAGCCGCCCAGTGTTTGGAACACTATGAATTTCTTCTGGATAAAGCT GCCCAAAGAGACAATGAAGAGGAAACAACAGATGATCCACGAAAACTTAAACCTGGAGAA ATAGATCCAAATCCAGAAACAAAACCAGCACGGCCTGATCCGATTGATATGGATGAGGAT GAACTCGAGATGCTTTCTGAAGCTAGAGCCCGCCTGGCTAATACTCAGGGAAAGAAAGCC AAGAGGAAAGCACGAGAGAAACAGTTGGAAGAGGCAAGGCGTCTTGCTGCCCTCCAGAAG AGAAGAGAACTTCGAGCAGCTGGCATAGAAATTCAGAAGAAAAGAAAAAAGAAGAGGGGA GTTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTCTATGACACT TCTGAGGAAAACTACCAGGCTCTAGATGCTGATTTCAGAAAGTTAAGACAACAGGATCTT GATGGGGAGCTAAGATCTGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTAGAGGAAGTGGCGCCTTAGGGTCCCGTGGCCGCAGCGCCGTTACTACTTCTCTGAA TCTCCACTCGGCTGCTTGCCGAGACACTCCGCCGCCAAGATGCCTCGAATTATGATCAAG GGGGGTGTGTGGAGGAATACCGAGGATGAAATTTTGAAAGCAGCGGTAATGAAATATGGA AAAAACCAGTGGTCTAGGATTGCCTCACTGCTGCATAGAAAATCAGCCAAGCAGTGCAAA GCCAGATGGTATGAGTGGTTGGATCCAAGCATTAAGAAAACAGAATGGTCCAGAGAAGAA GAGGAAAAACTGTTGCACTTGGCCAAGTTGATGCCAACTCAGTGGAGGACCATCGCTCCA ATCATTGGAAGAACAGCCGCCCAGTGTTTGGAACACTATGAATTTCTTCTGGATAAAGCT GCCCAAAGAGACAATGAAGAGGAAACAACAGATGATCCACGAAAACTTAAACCTGGAGAA ATAGATCCAAATCCAGAAACAAAACCAGCACGGCCTGATCCGATTGATATGGATGAGGAT GAACTCGAGATGCTTTCTGAAGCTAGAGCCCGCCTGGCTAATACTCAGGGAAAGAAAGCC AAGAGGAAAGCACGAGAGAAACAGTTGGAAGAGGCAAGGCGTCTTGCTGCCCTCCAGAAG AGAAGAGAACTTCGAGCAGCTGGCATAGAAATTCAGAAGAAAAGAAAAAAGAAGAGGGGA GTTGATTATAATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTCTATGACACT TCTGAGGAAAACTACCAGGCTCTAGATGCTGATTTCAGAAAGTTAAGACAACAGGATCTT GATGGGGAGCTAAGATCTGAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 248-411, + strand, RNAz p=0.817663 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 248-411, + strand, RNAz p=0.817663 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr23 (17442236-17442092) | |
| 1-145, gnl|Hg17|chr6 (44463440-44463584) | |
| 1-145, gnl|Mm7|chr17 (43562939-43562794) | |
| 248-411, gnl|bosTau2|chr23 (17438299-17438136) | |
| 248-411, gnl|canFam2|chr12 (15786925-15787109) | |
| 248-411, gnl|danRer3|chrNA (36392276-36392083) | |
| 248-411, gnl|echTel1|scaffold_293320 (52424-52240) | |
| 248-411, gnl|fr1|chrUn (179337769-179337958) | |
| 248-411, gnl|galGal2|chr3 (106740116-106740304) | |
| 248-411, gnl|hg17|chr6 (44468366-44468550) | |
| 248-411, gnl|Hg17|chr6 (44468381-44468544) | |
| 248-411, gnl|loxAfr1|scaffold_13205 (12904-12719) | |
| 248-411, gnl|mm7|chr17 (43556101-43555920) | |
| 248-411, gnl|Mm7|chr17 (43556086-43555923) | |
| 248-411, gnl|monDom2|scaffold_0 (196382717-196382530) | |
| 248-411, gnl|panTro1|chr5 (45078637-45078821) | |
| 248-411, gnl|rheMac2|chr4 (44311828-44312012) | |
| 248-411, gnl|rn3|chr9 (11167295-11167477) | |
| 248-411, gnl|tetNig1|chr17 (9235028-9234843) | |
| 248-411, gnl|xenTro1|scaffold_996 (404990-405174) | |
| 637-755, gnl|bosTau2|chr23 (17431744-17431626) | |
| 637-755, gnl|Hg17|chr6 (44479522-44479640) | |
| 637-755, gnl|Mm7|chr17 (43549225-43549107) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr23 (17442236-17442092) | |
| 1-145, gnl|Hg17|chr6 (44463440-44463584) | |
| 1-145, gnl|Mm7|chr17 (43562939-43562794) | |
| 248-411, gnl|bosTau2|chr23 (17438299-17438136) | |
| 248-411, gnl|canFam2|chr12 (15786925-15787109) | |
| 248-411, gnl|danRer3|chrNA (36392276-36392083) | |
| 248-411, gnl|echTel1|scaffold_293320 (52424-52240) | |
| 248-411, gnl|fr1|chrUn (179337769-179337958) | |
| 248-411, gnl|galGal2|chr3 (106740116-106740304) | |
| 248-411, gnl|hg17|chr6 (44468366-44468550) | |
| 248-411, gnl|Hg17|chr6 (44468381-44468544) | |
| 248-411, gnl|loxAfr1|scaffold_13205 (12904-12719) | |
| 248-411, gnl|mm7|chr17 (43556101-43555920) | |
| 248-411, gnl|Mm7|chr17 (43556086-43555923) | |
| 248-411, gnl|monDom2|scaffold_0 (196382717-196382530) | |
| 248-411, gnl|panTro1|chr5 (45078637-45078821) | |
| 248-411, gnl|rheMac2|chr4 (44311828-44312012) | |
| 248-411, gnl|rn3|chr9 (11167295-11167477) | |
| 248-411, gnl|tetNig1|chr17 (9235028-9234843) | |
| 248-411, gnl|xenTro1|scaffold_996 (404990-405174) | |
| 637-755, gnl|bosTau2|chr23 (17431744-17431626) | |
| 637-755, gnl|Hg17|chr6 (44479522-44479640) | |
| 637-755, gnl|Mm7|chr17 (43549225-43549107) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| cje (0.165235) | |
| ecc (0.115035) |