Ss1.1-Thy1-THY010053F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGAGGGAGGGCGGTCTGACCCGAAAGGGGCAGATAAAGGCAGAGGGGCGGGCGAGCG AGGAGGGGCTGGGGGTGGTGGTGCTAAGGGGGCGGGGCGCCCGACCCCCAGTTGCGCGGC TGCAGCTCTCTCAGCCCGGCTGGAAGTGAGCCGGGCTCGCCGACCGCTGGCCGAGCAGCC CCCCAAACCCGGCCGAAGCACTCCCACTTTCCAACTCCACGGTCCCCGCAGCGCGCGCGA GATGCAGCCGGCTCGGGACGCAGGCCTCTCCTGCTGATGAAAAGAAAGAGGAAAAATGGA CTACAGTCACCAGACTTCCCTAGTCCCATGTGGACAAGATAAATACATTTCCAAGAATGA ACTTCTCTTGCATCTGAAGACCTACAACTTGTACTATGAAGGCCAGAATTTGCAGCTCCG ACACCGCGAGGAAGAGGATGAGTTCATCGTGGAGGGGCTGCTGAACATCTCCTGGGGGCT GCGCCGGCCCATCCGTCTGCAGATGCAGGATGACAACGAACGCATTCGCCCCCCGCCGTC CTCTTCCTCTTGGCACTCCGGCTGTAACCTGGGGGCTCAGGGCACCATTCTGAAGCCCCT CACCATGCCCAACATTCAGATCTCAGAGGTGGATGCCCTGCCCGAGAGCGACCAGACGCC GAGCCCCACAGACTCCAGGGGCCTCAAGTCCCTGCCGGAAGACACCCCACAGCTGATGCG CACACGTAGTGATGTTGGGGTACGTCGTCGTGGCAACGTGAGGACACCCAGTGACCAGCG GCGAATCAGACGCCACCGCTTCTCCATCAATGGCCATTTCTACAACCACAAGACGTCAGT GTTCACACCAGCCTATGGCTCCATTACCAATGTCCGCATCAACAGCACCATGACCACTCC ACAGGTCCTGAAGCTGCTGCTCAACAAATTCAAGATTGAGAACTCGGCAGAGGAGTTTGC TTTGTACGTGGTCCATACCAGTGGCGAGAAACAGAAGCTGAAGAACACCGATTACCCCCT GATTGCCCGGATCCTCCAGGGCCCATGTGAGCAGGTCTCCAAAGTGTTCCTTATGGAGAA GGACCAGGTGGAAGAAGTCACCTATGACGTGGCTCAGTATATAAAGTTTGAGATGCCTGT TCTTAAAAGCTTCATTCAGAAGCTCCAAGAGGAAGAAGATCGGGAAGTAAAGAAGCTGAT GCGCAAGTACACTGTGCTCCGGCTAATGATTCGGCAGAGGCTGGAGGAGATAGCTGAGAC CCCAGCAACAATCTGAGCCACAAGAAGGAGGGGATCCAGATGCCGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGAGGGAGGGCGGTCTGACCCGAAAGGGGCAGATAAAGGCAGAGGGGCGGGCGAGCG AGGAGGGGCTGGGGGTGGTGGTGCTAAGGGGGCGGGGCGCCCGACCCCCAGTTGCGCGGC TGCAGCTCTCTCAGCCCGGCTGGAAGTGAGCCGGGCTCGCCGACCGCTGGCCGAGCAGCC CCCCAAACCCGGCCGAAGCACTCCCACTTTCCAACTCCACGGTCCCCGCAGCGCGCGCGA GATGCAGCCGGCTCGGGACGCAGGCCTCTCCTGCTGATGAAAAGAAAGAGGAAAAATGGA CTACAGTCACCAGACTTCCCTAGTCCCATGTGGACAAGATAAATACATTTCCAAGAATGA ACTTCTCTTGCATCTGAAGACCTACAACTTGTACTATGAAGGCCAGAATTTGCAGCTCCG ACACCGCGAGGAAGAGGATGAGTTCATCGTGGAGGGGCTGCTGAACATCTCCTGGGGGCT GCGCCGGCCCATCCGTCTGCAGATGCAGGATGACAACGAACGCATTCGCCCCCCGCCGTC CTCTTCCTCTTGGCACTCCGGCTGTAACCTGGGGGCTCAGGGCACCATTCTGAAGCCCCT CACCATGCCCAACATTCAGATCTCAGAGGTGGATGCCCTGCCCGAGAGCGACCAGACGCC GAGCCCCACAGACTCCAGGGGCCTCAAGTCCCTGCCGGAAGACACCCCACAGCTGATGCG CACACGTAGTGATGTTGGGGTACGTCGTCGTGGCAACGTGAGGACACCCAGTGACCAGCG GCGAATCAGACGCCACCGCTTCTCCATCAATGGCCATTTCTACAACCACAAGACGTCAGT GTTCACACCAGCCTATGGCTCCATTACCAATGTCCGCATCAACAGCACCATGACCACTCC ACAGGTCCTGAAGCTGCTGCTCAACAAATTCAAGATTGAGAACTCGGCAGAGGAGTTTGC TTTGTACGTGGTCCATACCAGTGGCGAGAAACAGAAGCTGAAGAACACCGATTACCCCCT GATTGCCCGGATCCTCCAGGGCCCATGTGAGCAGGTCTCCAAAGTGTTCCTTATGGAGAA GGACCAGGTGGAAGAAGTCACCTATGACGTGGCTCAGTATATAAAGTTTGAGATGCCTGT TCTTAAAAGCTTCATTCAGAAGCTCCAAGAGGAAGAAGATCGGGAAGTAAAGAAGCTGAT GCGCAAGTACACTGTGCTCCGGCTAATGATTCGGCAGAGGCTGGAGGAGATAGCTGAGAC CCCAGCAACAATCTGAGCCACAAGAAGGAGGGGATCCAGATGCCGCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 6-548, - strand, RNAz p=0.936441 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 6-548, - strand, RNAz p=0.936441 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 6-265, gnl|bosTau2|chr13 (31533452-31533207) | |
| 6-265, gnl|canFam2|chr24 (19734799-19734278) | |
| 6-265, gnl|echTel1|scaffold_279961 (1591-1970) | |
| 6-265, gnl|hg17|chr20 (4751803-4752279) | |
| 6-265, gnl|Hg17|chr20 (4752222-4751959) | |
| 6-265, gnl|loxAfr1|scaffold_94452 (885-474) | |
| 6-265, gnl|mm7|chr2 (131770466-131770864) | |
| 6-265, gnl|Mm7|chr2 (131770838-131770602) | |
| 6-265, gnl|panTro1|chr21 (4714449-4714925) | |
| 6-265, gnl|rn3|chr3 (119674936-119675334) | |
| 429-582, gnl|bosTau2|chr13 (31497494-31497341) | |
| 429-582, gnl|canFam2|chr24 (19764083-19763935) | |
| 429-582, gnl|danRer3|chr13 (31832616-31832736) | |
| 429-582, gnl|echTel1|scaffold_282888 (50420-50561) | |
| 429-582, gnl|fr1|chrUn (60664036-60663912) | |
| 429-582, gnl|galGal2|chr22 (416135-416010) | |
| 429-582, gnl|hg17|chr20 (4724431-4724580) | |
| 429-582, gnl|Hg17|chr20 (4724614-4724461) | |
| 429-582, gnl|loxAfr1|scaffold_22542 (26191-26077) | |
| 429-582, gnl|mm7|chr2 (131748193-131748338) | |
| 429-582, gnl|Mm7|chr2 (131748372-131748219) | |
| 429-582, gnl|monDom2|scaffold_1 (94652205-94652329) | |
| 429-582, gnl|oryCun1|scaffold_117068 (10157-10012) | |
| 429-582, gnl|panTro1|chr21 (4692399-4692548) | |
| 429-582, gnl|rheMac2|chr10 (38133353-38133502) | |
| 429-582, gnl|rn3|chr3 (119652579-119652724) | |
| 429-582, gnl|tetNig1|chr12 (9578640-9578764) | |
| 429-582, gnl|xenTro1|scaffold_110 (723121-723258) | |
| 669-832, gnl|bosTau2|chr13 (31488270-31488107) | |
| 669-832, gnl|Hg17|chr20 (4719260-4719097) | |
| 669-832, gnl|Mm7|chr2 (131745315-131745152) | |
| 986-1111, gnl|bosTau2|chr13 (31482143-31482018) | |
| 986-1111, gnl|canFam2|chr24 (19770058-19769925) | |
| 986-1111, gnl|danRer3|chr13 (31825957-31826090) | |
| 986-1111, gnl|dasNov1|scaffold_222070 (900-1033) | |
| 986-1111, gnl|echTel1|scaffold_245865 (2775-2908) | |
| 986-1111, gnl|fr1|chrUn (60665286-60665156) | |
| 986-1111, gnl|galGal2|chr22 (419666-419533) | |
| 986-1111, gnl|hg17|chr20 (4716274-4716407) | |
| 986-1111, gnl|Hg17|chr20 (4716401-4716276) | |
| 986-1111, gnl|mm7|chr2 (131741281-131741413) | |
| 986-1111, gnl|Mm7|chr2 (131741408-131741283) | |
| 986-1111, gnl|monDom2|scaffold_1 (94638374-94638507) | |
| 986-1111, gnl|oryCun1|scaffold_207789 (48379-48265) | |
| 986-1111, gnl|panTro1|chr21 (4684232-4684365) | |
| 986-1111, gnl|rheMac2|chr10 (38124919-38125052) | |
| 986-1111, gnl|rn3|chr3 (119645713-119645845) | |
| 986-1111, gnl|tetNig1|chr12 (9577384-9577514) | |
| 986-1111, gnl|xenTro1|scaffold_110 (716076-716206) | |
| 1204-1306, gnl|bosTau2|chr13 (31479355-31479253) | |
| 1204-1306, gnl|Hg17|chr20 (4712991-4712889) | |
| 1204-1306, gnl|Mm7|chr2 (131737309-131737206) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-265, gnl|bosTau2|chr13 (31533452-31533207) | |
| 6-265, gnl|canFam2|chr24 (19734799-19734278) | |
| 6-265, gnl|echTel1|scaffold_279961 (1591-1970) | |
| 6-265, gnl|hg17|chr20 (4751803-4752279) | |
| 6-265, gnl|Hg17|chr20 (4752222-4751959) | |
| 6-265, gnl|loxAfr1|scaffold_94452 (885-474) | |
| 6-265, gnl|mm7|chr2 (131770466-131770864) | |
| 6-265, gnl|Mm7|chr2 (131770838-131770602) | |
| 6-265, gnl|panTro1|chr21 (4714449-4714925) | |
| 6-265, gnl|rn3|chr3 (119674936-119675334) | |
| 429-582, gnl|bosTau2|chr13 (31497494-31497341) | |
| 429-582, gnl|canFam2|chr24 (19764083-19763935) | |
| 429-582, gnl|danRer3|chr13 (31832616-31832736) | |
| 429-582, gnl|echTel1|scaffold_282888 (50420-50561) | |
| 429-582, gnl|fr1|chrUn (60664036-60663912) | |
| 429-582, gnl|galGal2|chr22 (416135-416010) | |
| 429-582, gnl|hg17|chr20 (4724431-4724580) | |
| 429-582, gnl|Hg17|chr20 (4724614-4724461) | |
| 429-582, gnl|loxAfr1|scaffold_22542 (26191-26077) | |
| 429-582, gnl|mm7|chr2 (131748193-131748338) | |
| 429-582, gnl|Mm7|chr2 (131748372-131748219) | |
| 429-582, gnl|monDom2|scaffold_1 (94652205-94652329) | |
| 429-582, gnl|oryCun1|scaffold_117068 (10157-10012) | |
| 429-582, gnl|panTro1|chr21 (4692399-4692548) | |
| 429-582, gnl|rheMac2|chr10 (38133353-38133502) | |
| 429-582, gnl|rn3|chr3 (119652579-119652724) | |
| 429-582, gnl|tetNig1|chr12 (9578640-9578764) | |
| 429-582, gnl|xenTro1|scaffold_110 (723121-723258) | |
| 669-832, gnl|bosTau2|chr13 (31488270-31488107) | |
| 669-832, gnl|Hg17|chr20 (4719260-4719097) | |
| 669-832, gnl|Mm7|chr2 (131745315-131745152) | |
| 986-1111, gnl|bosTau2|chr13 (31482143-31482018) | |
| 986-1111, gnl|canFam2|chr24 (19770058-19769925) | |
| 986-1111, gnl|danRer3|chr13 (31825957-31826090) | |
| 986-1111, gnl|dasNov1|scaffold_222070 (900-1033) | |
| 986-1111, gnl|echTel1|scaffold_245865 (2775-2908) | |
| 986-1111, gnl|fr1|chrUn (60665286-60665156) | |
| 986-1111, gnl|galGal2|chr22 (419666-419533) | |
| 986-1111, gnl|hg17|chr20 (4716274-4716407) | |
| 986-1111, gnl|Hg17|chr20 (4716401-4716276) | |
| 986-1111, gnl|mm7|chr2 (131741281-131741413) | |
| 986-1111, gnl|Mm7|chr2 (131741408-131741283) | |
| 986-1111, gnl|monDom2|scaffold_1 (94638374-94638507) | |
| 986-1111, gnl|oryCun1|scaffold_207789 (48379-48265) | |
| 986-1111, gnl|panTro1|chr21 (4684232-4684365) | |
| 986-1111, gnl|rheMac2|chr10 (38124919-38125052) | |
| 986-1111, gnl|rn3|chr3 (119645713-119645845) | |
| 986-1111, gnl|tetNig1|chr12 (9577384-9577514) | |
| 986-1111, gnl|xenTro1|scaffold_110 (716076-716206) | |
| 1204-1306, gnl|bosTau2|chr13 (31479355-31479253) | |
| 1204-1306, gnl|Hg17|chr20 (4712991-4712889) | |
| 1204-1306, gnl|Mm7|chr2 (131737309-131737206) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| nmm (0.132802) | |
| cty (0.10408) |