Ss1.1-Thy1-THY010053G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTGAGGCGCTCTGAAGTCCTCGGCGTCTTGGCGGCAGTTGGTGGAGTCGGAGCTCTC ACCTCACTCCGACCCTATTCCTGAGGAGAGCGGCGCCAGCCCGAGCCCTGTCTCGGATTG GGCGTCCGCCGAGGTCGGCACGCCTCTTCCTGTGGCTCTGTGAGGCTCTCGTCAGGACTG CCGACGCCTTGTCGCCATGGCGCCCACTATCCAGACCCAGGCCCAGCGCGAGGACGGCCA CAGGCCCAATTCTCACCGCACTCTGCCTGAGAGGTCTGGAGTGGTCTGCCGAGTCAAGTA CTGCAATAGCCTTCCTGACATTCCCTTCGACCCCAAGTTCATCACCTATCCCTTTGACCA GAACAGGTTCGTCCAGTACAAAGCGACTTCCTTGGAAAAACAGCACAAACATGATCTCCT GACTGAGCCAGACCTGGGAGTTACCATTGACCTTATCAACCCTGACACCTACCGCATTGA CCCCAATGTACTCCTAGATCCAGCTGATGAGAAGCTTTTAGAAGAGGAGATCCAGGCCCC AACCAGCTCCAAGAGATCCCAGCAGCATGCGAAGGTGGTGCCATGGATGCGGAAGACAGA GTATATCTCCACGGAGTTCAATCGTTACGGCATTTCCAATGAGAAGCCTGAGGTCAAGAT TGGGGTTTCTGTGAAGCAGCAGTTCACTGAGGAAGAAATATACAAAGACAGGGATAGCCA GATCACAGCTATTGAGAAGACTTTTGAGGATGCCCAGAAATCTATCTCCCAGCATTACAG CAAGCCTCGAGTGACACCAGTGGAGGTCATGCCTGTCTTTCCAGATTTTAAGATGTGGAT CAACCCATGTGCTCAGGTGATCTTTGATTCAGACCCAGCCCCAAAGGACACGAGTGGTGC AGCTGCATTGGAGATGATGTCTCAGGCCATGATCAGGGGCATGATGGATGAGGAAGGGAA CCAGTTTGTGGCTTACTTCCTGCCTGTGGAAGAAACCCTGAAGAAACGAAAACGGGACCA GGAGGAGGAGATGGATTATGCGCCAGATGATGTGTATGACTACAAGATTGCTCGCGAGTA CAACTGGAATGTGAAGAACAAGGCCAGCAAGGGCTACGAGGAAAACTACTTCTTCATCTT CCGAGAGGGGGATGGGGTTTACTACAATGAATTGGAGACCAGGGTCCGCCTGAGTAAGCG CCGGGCCAAGGCTGGGGTTCAGTCTGGTACCAATGCCCTGCTTGTGGTCAAACATCGGGA CATGAATGAGAAGGAGTTAGAAGCCCAGGAGGCACGGAAGGCCCAGCTGGAGAACCACGA ACCAGAGGAGGAAGAGGAGGAGGAAATGGAGACAGAAGAGAAAGAAGCTGGGGGCTCAGA TGAGGAACGAGAGAAGGGCAGCAGCAGTGAGAAGGAAGGCAGCGAGGATGAGCGCTCGGG CAGTGAGAGTGAACGAGAGGAGGGTGACAGAGATGAGGCCAGTGACAAGAGCGGCAGCGG CGAGGATGAAAGCAGTGAGGATGAGGCCCGGGCTGCCAGGGACAAAGAAGAGATCTTCGG CAGTGATGCTGATTCAGAGGATGACGCTGACTCTGACGATGAGGACAGAGGACGGGCCCG AGGCAGTGACAATGATTCGGACAGTGGCAGTGATGGGGGTGGCCAGCGGAGCCGGAGCCA CAGCCGGAGCCGGAGTGCCAGTCCCTTCCCCAGTGGCAGCGAGCATTCTGCTCAGGAGGA TGGCAGTGAAGCTGCAGCTTCGGATTCCAGTGAAGCTGACAGTGACAGTGACTGAGTCCC AGGGCCTTCAGGGCTGGAGCAGGTACAATTACTACGCGCAGGAAGGCACTTTTCAAGTGG TCTATTTGCAAGCTTTCTGCTTTGTTTCTCTCTCCTCCTCCAAACCTTTGCTGTTTAATA AAGCCACCTTCCTTTACTTCCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTGAGGCGCTCTGAAGTCCTCGGCGTCTTGGCGGCAGTTGGTGGAGTCGGAGCTCTC ACCTCACTCCGACCCTATTCCTGAGGAGAGCGGCGCCAGCCCGAGCCCTGTCTCGGATTG GGCGTCCGCCGAGGTCGGCACGCCTCTTCCTGTGGCTCTGTGAGGCTCTCGTCAGGACTG CCGACGCCTTGTCGCCATGGCGCCCACTATCCAGACCCAGGCCCAGCGCGAGGACGGCCA CAGGCCCAATTCTCACCGCACTCTGCCTGAGAGGTCTGGAGTGGTCTGCCGAGTCAAGTA CTGCAATAGCCTTCCTGACATTCCCTTCGACCCCAAGTTCATCACCTATCCCTTTGACCA GAACAGGTTCGTCCAGTACAAAGCGACTTCCTTGGAAAAACAGCACAAACATGATCTCCT GACTGAGCCAGACCTGGGAGTTACCATTGACCTTATCAACCCTGACACCTACCGCATTGA CCCCAATGTACTCCTAGATCCAGCTGATGAGAAGCTTTTAGAAGAGGAGATCCAGGCCCC AACCAGCTCCAAGAGATCCCAGCAGCATGCGAAGGTGGTGCCATGGATGCGGAAGACAGA GTATATCTCCACGGAGTTCAATCGTTACGGCATTTCCAATGAGAAGCCTGAGGTCAAGAT TGGGGTTTCTGTGAAGCAGCAGTTCACTGAGGAAGAAATATACAAAGACAGGGATAGCCA GATCACAGCTATTGAGAAGACTTTTGAGGATGCCCAGAAATCTATCTCCCAGCATTACAG CAAGCCTCGAGTGACACCAGTGGAGGTCATGCCTGTCTTTCCAGATTTTAAGATGTGGAT CAACCCATGTGCTCAGGTGATCTTTGATTCAGACCCAGCCCCAAAGGACACGAGTGGTGC AGCTGCATTGGAGATGATGTCTCAGGCCATGATCAGGGGCATGATGGATGAGGAAGGGAA CCAGTTTGTGGCTTACTTCCTGCCTGTGGAAGAAACCCTGAAGAAACGAAAACGGGACCA GGAGGAGGAGATGGATTATGCGCCAGATGATGTGTATGACTACAAGATTGCTCGCGAGTA CAACTGGAATGTGAAGAACAAGGCCAGCAAGGGCTACGAGGAAAACTACTTCTTCATCTT CCGAGAGGGGGATGGGGTTTACTACAATGAATTGGAGACCAGGGTCCGCCTGAGTAAGCG CCGGGCCAAGGCTGGGGTTCAGTCTGGTACCAATGCCCTGCTTGTGGTCAAACATCGGGA CATGAATGAGAAGGAGTTAGAAGCCCAGGAGGCACGGAAGGCCCAGCTGGAGAACCACGA ACCAGAGGAGGAAGAGGAGGAGGAAATGGAGACAGAAGAGAAAGAAGCTGGGGGCTCAGA TGAGGAACGAGAGAAGGGCAGCAGCAGTGAGAAGGAAGGCAGCGAGGATGAGCGCTCGGG CAGTGAGAGTGAACGAGAGGAGGGTGACAGAGATGAGGCCAGTGACAAGAGCGGCAGCGG CGAGGATGAAAGCAGTGAGGATGAGGCCCGGGCTGCCAGGGACAAAGAAGAGATCTTCGG CAGTGATGCTGATTCAGAGGATGACGCTGACTCTGACGATGAGGACAGAGGACGGGCCCG AGGCAGTGACAATGATTCGGACAGTGGCAGTGATGGGGGTGGCCAGCGGAGCCGGAGCCA CAGCCGGAGCCGGAGTGCCAGTCCCTTCCCCAGTGGCAGCGAGCATTCTGCTCAGGAGGA TGGCAGTGAAGCTGCAGCTTCGGATTCCAGTGAAGCTGACAGTGACAGTGACTGAGTCCC AGGGCCTTCAGGGCTGGAGCAGGTACAATTACTACGCGCAGGAAGGCACTTTTCAAGTGG TCTATTTGCAAGCTTTCTGCTTTGTTTCTCTCTCCTCCTCCAAACCTTTGCTGTTTAATA AAGCCACCTTCCTTTACTTCCCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 60-244, gnl|bosTau2|chr18 (43763345-43763529) | |
| 60-244, gnl|Hg17|chr19 (44573488-44573297) | |
| 60-244, gnl|Mm7|chr7 (25326966-25327153) | |
| 364-488, gnl|bosTau2|chr18 (43764569-43764693) | |
| 364-488, gnl|Hg17|chr19 (44572244-44572120) | |
| 364-488, gnl|Mm7|chr7 (25329313-25329437) | |
| 655-763, gnl|bosTau2|chr18 (43765119-43765227) | |
| 655-763, gnl|canFam2|chr1 (116738138-116737993) | |
| 655-763, gnl|dasNov1|scaffold_135980 (1388-1533) | |
| 655-763, gnl|echTel1|scaffold_189631 (2082-1934) | |
| 655-763, gnl|fr1|chrUn (60132773-60132914) | |
| 655-763, gnl|hg17|chr19 (44571570-44571715) | |
| 655-763, gnl|Hg17|chr19 (44571681-44571573) | |
| 655-763, gnl|loxAfr1|scaffold_148550 (4258-4111) | |
| 655-763, gnl|mm7|chr7 (25329960-25329816) | |
| 655-763, gnl|Mm7|chr7 (25329847-25329955) | |
| 655-763, gnl|monDom2|scaffold_139 (1029593-1029747) | |
| 655-763, gnl|panTro1|chr20_random (17598563-17598708) | |
| 655-763, gnl|rheMac2|chr19 (45733172-45733317) | |
| 655-763, gnl|rn3|chr1 (83581829-83581685) | |
| 655-763, gnl|tetNig1|chr16 (3236588-3236729) | |
| 655-763, gnl|xenTro1|scaffold_423 (1084033-1083887) | |
| 831-937, gnl|bosTau2|chr18 (43765474-43765580) | |
| 831-937, gnl|canFam2|chr1 (116738491-116738382) | |
| 831-937, gnl|danRer3|chrNA (185201919-185202029) | |
| 831-937, gnl|dasNov1|scaffold_135980 (1036-1145) | |
| 831-937, gnl|echTel1|scaffold_189631 (2444-2335) | |
| 831-937, gnl|fr1|chrUn (60132084-60132194) | |
| 831-937, gnl|hg17|chr19 (44571243-44571353) | |
| 831-937, gnl|Hg17|chr19 (44571347-44571241) | |
| 831-937, gnl|loxAfr1|scaffold_148550 (4630-4520) | |
| 831-937, gnl|mm7|chr7 (25330286-25330177) | |
| 831-937, gnl|Mm7|chr7 (25330180-25330286) | |
| 831-937, gnl|monDom2|scaffold_139 (1029251-1029360) | |
| 831-937, gnl|panTro1|chr20_random (17598236-17598346) | |
| 831-937, gnl|rheMac2|chr19 (45732845-45732955) | |
| 831-937, gnl|rn3|chr1 (83582153-83582044) | |
| 831-937, gnl|tetNig1|chr16 (3236145-3236255) | |
| 831-937, gnl|xenTro1|scaffold_423 (1085622-1085513) | |
| 1054-1183, gnl|bosTau2|chr18 (43765882-43766011) | |
| 1054-1183, gnl|canFam2|chr1 (116738921-116738813) | |
| 1054-1183, gnl|danRer3|chrNA (185201330-185201438) | |
| 1054-1183, gnl|dasNov1|scaffold_135980 (605-713) | |
| 1054-1183, gnl|fr1|chrUn (60131666-60131773) | |
| 1054-1183, gnl|galGal2|chrUn (154244076-154243969) | |
| 1054-1183, gnl|hg17|chr19 (44570817-44570925) | |
| 1054-1183, gnl|Hg17|chr19 (44570947-44570818) | |
| 1054-1183, gnl|loxAfr1|scaffold_148550 (5061-4953) | |
| 1054-1183, gnl|mm7|chr7 (25330851-25330743) | |
| 1054-1183, gnl|Mm7|chr7 (25330719-25330848) | |
| 1054-1183, gnl|monDom2|scaffold_139 (1028833-1028941) | |
| 1054-1183, gnl|panTro1|chr20 (41515746-41515854) | |
| 1054-1183, gnl|rheMac2|chr19 (45732407-45732515) | |
| 1054-1183, gnl|rn3|chr1 (83582832-83582724) | |
| 1054-1183, gnl|tetNig1|chr16 (3235728-3235835) | |
| 1054-1183, gnl|xenTro1|scaffold_423 (1087435-1087327) | |
| 1377-1944, gnl|bosTau2|chr18 (43767927-43768489) | |
| 1377-1944, gnl|Hg17|chr19 (44568886-44568324) | |
| 1377-1944, gnl|Mm7|chr7 (25332721-25333289) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-244, gnl|bosTau2|chr18 (43763345-43763529) | |
| 60-244, gnl|Hg17|chr19 (44573488-44573297) | |
| 60-244, gnl|Mm7|chr7 (25326966-25327153) | |
| 364-488, gnl|bosTau2|chr18 (43764569-43764693) | |
| 364-488, gnl|Hg17|chr19 (44572244-44572120) | |
| 364-488, gnl|Mm7|chr7 (25329313-25329437) | |
| 655-763, gnl|bosTau2|chr18 (43765119-43765227) | |
| 655-763, gnl|canFam2|chr1 (116738138-116737993) | |
| 655-763, gnl|dasNov1|scaffold_135980 (1388-1533) | |
| 655-763, gnl|echTel1|scaffold_189631 (2082-1934) | |
| 655-763, gnl|fr1|chrUn (60132773-60132914) | |
| 655-763, gnl|hg17|chr19 (44571570-44571715) | |
| 655-763, gnl|Hg17|chr19 (44571681-44571573) | |
| 655-763, gnl|loxAfr1|scaffold_148550 (4258-4111) | |
| 655-763, gnl|mm7|chr7 (25329960-25329816) | |
| 655-763, gnl|Mm7|chr7 (25329847-25329955) | |
| 655-763, gnl|monDom2|scaffold_139 (1029593-1029747) | |
| 655-763, gnl|panTro1|chr20_random (17598563-17598708) | |
| 655-763, gnl|rheMac2|chr19 (45733172-45733317) | |
| 655-763, gnl|rn3|chr1 (83581829-83581685) | |
| 655-763, gnl|tetNig1|chr16 (3236588-3236729) | |
| 655-763, gnl|xenTro1|scaffold_423 (1084033-1083887) | |
| 831-937, gnl|bosTau2|chr18 (43765474-43765580) | |
| 831-937, gnl|canFam2|chr1 (116738491-116738382) | |
| 831-937, gnl|danRer3|chrNA (185201919-185202029) | |
| 831-937, gnl|dasNov1|scaffold_135980 (1036-1145) | |
| 831-937, gnl|echTel1|scaffold_189631 (2444-2335) | |
| 831-937, gnl|fr1|chrUn (60132084-60132194) | |
| 831-937, gnl|hg17|chr19 (44571243-44571353) | |
| 831-937, gnl|Hg17|chr19 (44571347-44571241) | |
| 831-937, gnl|loxAfr1|scaffold_148550 (4630-4520) | |
| 831-937, gnl|mm7|chr7 (25330286-25330177) | |
| 831-937, gnl|Mm7|chr7 (25330180-25330286) | |
| 831-937, gnl|monDom2|scaffold_139 (1029251-1029360) | |
| 831-937, gnl|panTro1|chr20_random (17598236-17598346) | |
| 831-937, gnl|rheMac2|chr19 (45732845-45732955) | |
| 831-937, gnl|rn3|chr1 (83582153-83582044) | |
| 831-937, gnl|tetNig1|chr16 (3236145-3236255) | |
| 831-937, gnl|xenTro1|scaffold_423 (1085622-1085513) | |
| 1054-1183, gnl|bosTau2|chr18 (43765882-43766011) | |
| 1054-1183, gnl|canFam2|chr1 (116738921-116738813) | |
| 1054-1183, gnl|danRer3|chrNA (185201330-185201438) | |
| 1054-1183, gnl|dasNov1|scaffold_135980 (605-713) | |
| 1054-1183, gnl|fr1|chrUn (60131666-60131773) | |
| 1054-1183, gnl|galGal2|chrUn (154244076-154243969) | |
| 1054-1183, gnl|hg17|chr19 (44570817-44570925) | |
| 1054-1183, gnl|Hg17|chr19 (44570947-44570818) | |
| 1054-1183, gnl|loxAfr1|scaffold_148550 (5061-4953) | |
| 1054-1183, gnl|mm7|chr7 (25330851-25330743) | |
| 1054-1183, gnl|Mm7|chr7 (25330719-25330848) | |
| 1054-1183, gnl|monDom2|scaffold_139 (1028833-1028941) | |
| 1054-1183, gnl|panTro1|chr20 (41515746-41515854) | |
| 1054-1183, gnl|rheMac2|chr19 (45732407-45732515) | |
| 1054-1183, gnl|rn3|chr1 (83582832-83582724) | |
| 1054-1183, gnl|tetNig1|chr16 (3235728-3235835) | |
| 1054-1183, gnl|xenTro1|scaffold_423 (1087435-1087327) | |
| 1377-1944, gnl|bosTau2|chr18 (43767927-43768489) | |
| 1377-1944, gnl|Hg17|chr19 (44568886-44568324) | |
| 1377-1944, gnl|Mm7|chr7 (25332721-25333289) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| ill (0.351185) | |
| tes (0.207814) | |
| col (0.195008) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| tes (0.207814) | |
| col (0.195008) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |