Ss1.1-Thy1-THY010053G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTGCTCCTCTCCATTTTTCTAGGAGAGAGCGGGAGACGGGAGAGAGCGGTTGGCCTT TAGGTCCGGGTGATAGCGGAACGTACGGTGAGGGGGGCGTCTGTGTTCTCGCCGCGGTGC TCCTTCCAACTCCAGCTGGCAGGGAAACTGTCTTCCTCTCTAAGATGTACAGAACCAAAG TGGGTTTGAAGGACCGTCAGCAGCTCTACAAGCTGATCATCAGCCAGCTGCTCTATGATG GCTACATCAGCATTGCTAATGGCCTCATCAACGAAATCAAGCCTCAGTCTGTCTGTGCAC CCTCAGAGCAGCTCCTGCATCTCATCAAACTAGGAATGGAAAACGATGACACTGCGGTTC AGTATGCAATTGGTCGGTCAGATACAGTCGCCCCTGGCACAGGAATTGACCTGGAGTTTG ATGCAGACGTCCAGACTATGTCCCCAGAGGCCTCAGAGTACGAGACATGCTATGTCACAT CCCACAAAGGACCATGTCGTGTAGCTACCTATAGTAGAGATGGGCAGTTAATAGCTACTG GATCTGCTGATGCTTCCATAAAAATACTTGACACGGAAAGAATGTTGGCCAAAAGTGCCA TGCCAATAGAGGTCATGATGAACGAGACCGCACAGCAGAACATGGAAAACCACCCAGTGA TCCGAACTCTCTATGACCACGTGGATGAAGTCACATGTCTCGCTTTCCACCCAACAGAAC AGATCCTTGCTTCTGGTTCAAGGGATTACACTCTTAAATTATTCGATTATTCCAAACCAT CTGCAAAAAGAGCCTTCAAATACATTCAGGAAGCTGAAATGTTACGTTCCATCTCTTTCC ATCCCTCCGGAGACTTTATACTTGTTGGGACTCAGCATCCTACTCTTCGGCTTTATGACA TCAACACCTTTCAGTGTTTTGTCTCTTGCAATCCTCAAGATCAACACACCGATGCTATAT GTTCCGTTAATTACAATCCTAGCGCCAATATGTACGTGACTGGTAGCAAGGACGGCTGCA TCAAATTATGGGATGGCGTTTCAAATCGATGCATCACAACTTTCGAGAAAGCACATGACG GTGCTGAAGTTTGTTCTGCCATTTTTTCTAAAAATTCTAAATACATCCTGTCAAGTGGAA AAGACTCTGTAGCTAAACTTTGGGAAATATCAACAGGACGAACGCTGGTCAGATACACAG GCGCTGGCTTGAGCGGACGGCAGGCACGGTTCTGTAGCATTTTAGTTTCTGGAACGCTCT TTTGGATCCTCAAGAGCTCCTCACAATACGTCTGTGAATCAAATAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTGCTCCTCTCCATTTTTCTAGGAGAGAGCGGGAGACGGGAGAGAGCGGTTGGCCTT TAGGTCCGGGTGATAGCGGAACGTACGGTGAGGGGGGCGTCTGTGTTCTCGCCGCGGTGC TCCTTCCAACTCCAGCTGGCAGGGAAACTGTCTTCCTCTCTAAGATGTACAGAACCAAAG TGGGTTTGAAGGACCGTCAGCAGCTCTACAAGCTGATCATCAGCCAGCTGCTCTATGATG GCTACATCAGCATTGCTAATGGCCTCATCAACGAAATCAAGCCTCAGTCTGTCTGTGCAC CCTCAGAGCAGCTCCTGCATCTCATCAAACTAGGAATGGAAAACGATGACACTGCGGTTC AGTATGCAATTGGTCGGTCAGATACAGTCGCCCCTGGCACAGGAATTGACCTGGAGTTTG ATGCAGACGTCCAGACTATGTCCCCAGAGGCCTCAGAGTACGAGACATGCTATGTCACAT CCCACAAAGGACCATGTCGTGTAGCTACCTATAGTAGAGATGGGCAGTTAATAGCTACTG GATCTGCTGATGCTTCCATAAAAATACTTGACACGGAAAGAATGTTGGCCAAAAGTGCCA TGCCAATAGAGGTCATGATGAACGAGACCGCACAGCAGAACATGGAAAACCACCCAGTGA TCCGAACTCTCTATGACCACGTGGATGAAGTCACATGTCTCGCTTTCCACCCAACAGAAC AGATCCTTGCTTCTGGTTCAAGGGATTACACTCTTAAATTATTCGATTATTCCAAACCAT CTGCAAAAAGAGCCTTCAAATACATTCAGGAAGCTGAAATGTTACGTTCCATCTCTTTCC ATCCCTCCGGAGACTTTATACTTGTTGGGACTCAGCATCCTACTCTTCGGCTTTATGACA TCAACACCTTTCAGTGTTTTGTCTCTTGCAATCCTCAAGATCAACACACCGATGCTATAT GTTCCGTTAATTACAATCCTAGCGCCAATATGTACGTGACTGGTAGCAAGGACGGCTGCA TCAAATTATGGGATGGCGTTTCAAATCGATGCATCACAACTTTCGAGAAAGCACATGACG GTGCTGAAGTTTGTTCTGCCATTTTTTCTAAAAATTCTAAATACATCCTGTCAAGTGGAA AAGACTCTGTAGCTAAACTTTGGGAAATATCAACAGGACGAACGCTGGTCAGATACACAG GCGCTGGCTTGAGCGGACGGCAGGCACGGTTCTGTAGCATTTTAGTTTCTGGAACGCTCT TTTGGATCCTCAAGAGCTCCTCACAATACGTCTGTGAATCAAATAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 807-925, - strand, RNAz p=0.790034 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 807-925, - strand, RNAz p=0.790034 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 332-619, gnl|bosTau2|chr13 (41019547-41019260) | |
| 332-619, gnl|canFam2|chr24 (44590369-44590644) | |
| 332-619, gnl|danRer3|chr11 (28860509-28860238) | |
| 332-619, gnl|echTel1|scaffold_263476 (405-135) | |
| 332-619, gnl|fr1|chrUn (236327319-236327057) | |
| 332-619, gnl|galGal2|chr20 (11535928-11535677) | |
| 332-619, gnl|hg17|chr20 (54405637-54405913) | |
| 332-619, gnl|Hg17|chr20 (54405668-54405955) | |
| 332-619, gnl|loxAfr1|scaffold_2284 (90397-90122) | |
| 332-619, gnl|mm7|chr2 (172168261-172168535) | |
| 332-619, gnl|Mm7|chr2 (172168290-172168577) | |
| 332-619, gnl|monDom2|scaffold_1 (169638475-169638737) | |
| 332-619, gnl|oryCun1|scaffold_81800 (5969-6244) | |
| 332-619, gnl|panTro1|chr21 (57323203-57323479) | |
| 332-619, gnl|rheMac2|chr10 (8148781-8148505) | |
| 332-619, gnl|rn3|chr3 (163197672-163197946) | |
| 332-619, gnl|tetNig1|chrUn_random (11965206-11965465) | |
| 332-619, gnl|xenTro1|scaffold_1157 (186541-186285) | |
| 807-1201, gnl|bosTau2|chr13 (41017864-41017470) | |
| 807-1201, gnl|canFam2|chr24 (44591859-44592261) | |
| 807-1201, gnl|danRer3|chr11 (28859364-28858962) | |
| 807-1201, gnl|dasNov1|scaffold_1805 (125025-124623) | |
| 807-1201, gnl|fr1|chrUn (236326379-236325981) | |
| 807-1201, gnl|galGal2|chr20 (11534125-11533723) | |
| 807-1201, gnl|hg17|chr20 (54407426-54407828) | |
| 807-1201, gnl|Hg17|chr20 (54407427-54407821) | |
| 807-1201, gnl|loxAfr1|scaffold_2284 (88483-88081) | |
| 807-1201, gnl|mm7|chr2 (172170268-172170668) | |
| 807-1201, gnl|Mm7|chr2 (172170267-172170661) | |
| 807-1201, gnl|monDom2|scaffold_1 (169640138-169640540) | |
| 807-1201, gnl|oryCun1|scaffold_81800 (7395-7797) | |
| 807-1201, gnl|panTro1|chr21 (57324993-57325395) | |
| 807-1201, gnl|rheMac2|chr10 (8146952-8146550) | |
| 807-1201, gnl|rn3|chr3 (163199754-163200154) | |
| 807-1201, gnl|tetNig1|chrUn_random (11966855-11967257) | |
| 807-1201, gnl|xenTro1|scaffold_1157 (184678-184276) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 332-619, gnl|bosTau2|chr13 (41019547-41019260) | |
| 332-619, gnl|canFam2|chr24 (44590369-44590644) | |
| 332-619, gnl|danRer3|chr11 (28860509-28860238) | |
| 332-619, gnl|echTel1|scaffold_263476 (405-135) | |
| 332-619, gnl|fr1|chrUn (236327319-236327057) | |
| 332-619, gnl|galGal2|chr20 (11535928-11535677) | |
| 332-619, gnl|hg17|chr20 (54405637-54405913) | |
| 332-619, gnl|Hg17|chr20 (54405668-54405955) | |
| 332-619, gnl|loxAfr1|scaffold_2284 (90397-90122) | |
| 332-619, gnl|mm7|chr2 (172168261-172168535) | |
| 332-619, gnl|Mm7|chr2 (172168290-172168577) | |
| 332-619, gnl|monDom2|scaffold_1 (169638475-169638737) | |
| 332-619, gnl|oryCun1|scaffold_81800 (5969-6244) | |
| 332-619, gnl|panTro1|chr21 (57323203-57323479) | |
| 332-619, gnl|rheMac2|chr10 (8148781-8148505) | |
| 332-619, gnl|rn3|chr3 (163197672-163197946) | |
| 332-619, gnl|tetNig1|chrUn_random (11965206-11965465) | |
| 332-619, gnl|xenTro1|scaffold_1157 (186541-186285) | |
| 807-1201, gnl|bosTau2|chr13 (41017864-41017470) | |
| 807-1201, gnl|canFam2|chr24 (44591859-44592261) | |
| 807-1201, gnl|danRer3|chr11 (28859364-28858962) | |
| 807-1201, gnl|dasNov1|scaffold_1805 (125025-124623) | |
| 807-1201, gnl|fr1|chrUn (236326379-236325981) | |
| 807-1201, gnl|galGal2|chr20 (11534125-11533723) | |
| 807-1201, gnl|hg17|chr20 (54407426-54407828) | |
| 807-1201, gnl|Hg17|chr20 (54407427-54407821) | |
| 807-1201, gnl|loxAfr1|scaffold_2284 (88483-88081) | |
| 807-1201, gnl|mm7|chr2 (172170268-172170668) | |
| 807-1201, gnl|Mm7|chr2 (172170267-172170661) | |
| 807-1201, gnl|monDom2|scaffold_1 (169640138-169640540) | |
| 807-1201, gnl|oryCun1|scaffold_81800 (7395-7797) | |
| 807-1201, gnl|panTro1|chr21 (57324993-57325395) | |
| 807-1201, gnl|rheMac2|chr10 (8146952-8146550) | |
| 807-1201, gnl|rn3|chr3 (163199754-163200154) | |
| 807-1201, gnl|tetNig1|chrUn_random (11966855-11967257) | |
| 807-1201, gnl|xenTro1|scaffold_1157 (184678-184276) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| lun (0.300978) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.300978) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |