Non-Coding RNA Search

Ss1.1-Thy1-THY010053H05.5

Sequence:


               
               AGTTTCTTCTGGAAGAAGCTCGCCTCATCGAAGCAGCCGAGATGGCCAAAAAGGCAGCTG
AACTGGACAGCACGGAGTTTGACGTGGTCTTCAATGCTGCCCACATGCTCAGACAGGCTA
GCCTCAATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATC
CGGCGGCTCTGATGAATCTGGGAGCCATCCTGCACCTCAACGGCAGGCTCCAAAGGGCCG
AGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGATGACGTCATCACGCAGTCCAACC
TCCGCAAACTCTGGAACATCATGGAAAAGCAAGGCTTAAAGACCTCCAAGACCTGACACG
GGAGGGCAGCCCCTACCTCGTCCTCTTCCATATCCTAAAGCTGGCTTCACGGACGCACAG
AATTTCCCCGCGGTGCTGTGACAAGAGCTAGTTTGGACTTCACGGCCCAGGGCAGAGATC
ACTGAGGTTGCTGCCCCTTCTGGAAGTACCCACTTTGCTTTTGGCACAGCCACTAACACC
AAAAAAGGGGAATGTTGGAAACCTCCTATAGGACATAATTGTCACCCATAGAACCGTAAA
CCAGAGCACTTAAAACAGCATCTTTTAGCATCTGAAATGGGGGGGGGGGGCCTCAGTTGC
AAATGTTGTTCATTTTTGAAAGGTAACTTCGAAATTGTACTGTTCCTGAAACACTGTGAG
AGGAAGACAGAGTGCCTGTGCAGCCACCGTGCACTGTCAAGGTCACGTGTTCATGGGGAG
TGATTGAAAAGGGGGGTGGATCCTGGGAAGCCGCCGGTTGTCCTGACGCTGCTGTCTTCC
CTCTTTGGGACAGCCTGCCTATCATTTTCTAAAACTTAGAGAACTTTTTTTTTTTTTAAT
CGTGTGTCAGGATCTGTCAGAGTCTACCTTTGTTTCTGGACTAGTGCCCATAAGGTTTTA
TGATTCAGCTGTCATGGTCCTTTGGGGCATTCCTTTGCTTTTCATGTGCTGAAAAGGGTG
AGCAGGTGCAAAGCAAGCCACGTTTCTCACTGGTGTTGTAGGAGGGGCTGGGGAGGCCTT
ATGTGTGTCAGGCAGGCATTTTTTACTCTGATGTCACCAACATGCTCCACCCCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTCTTCTGGAAGAAGCTCGCCTCATCGAAGCAGCCGAGATGGCCAAAAAGGCAGCTG
AACTGGACAGCACGGAGTTTGACGTGGTCTTCAATGCTGCCCACATGCTCAGACAGGCTA
GCCTCAATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATC
CGGCGGCTCTGATGAATCTGGGAGCCATCCTGCACCTCAACGGCAGGCTCCAAAGGGCCG
AGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGATGACGTCATCACGCAGTCCAACC
TCCGCAAACTCTGGAACATCATGGAAAAGCAAGGCTTAAAGACCTCCAAGACCTGACACG
GGAGGGCAGCCCCTACCTCGTCCTCTTCCATATCCTAAAGCTGGCTTCACGGACGCACAG
AATTTCCCCGCGGTGCTGTGACAAGAGCTAGTTTGGACTTCACGGCCCAGGGCAGAGATC
ACTGAGGTTGCTGCCCCTTCTGGAAGTACCCACTTTGCTTTTGGCACAGCCACTAACACC
AAAAAAGGGGAATGTTGGAAACCTCCTATAGGACATAATTGTCACCCATAGAACCGTAAA
CCAGAGCACTTAAAACAGCATCTTTTAGCATCTGAAATGGGGGGGGGGGGCCTCAGTTGC
AAATGTTGTTCATTTTTGAAAGGTAACTTCGAAATTGTACTGTTCCTGAAACACTGTGAG
AGGAAGACAGAGTGCCTGTGCAGCCACCGTGCACTGTCAAGGTCACGTGTTCATGGGGAG
TGATTGAAAAGGGGGGTGGATCCTGGGAAGCCGCCGGTTGTCCTGACGCTGCTGTCTTCC
CTCTTTGGGACAGCCTGCCTATCATTTTCTAAAACTTAGAGAACTTTTTTTTTTTTTAAT
CGTGTGTCAGGATCTGTCAGAGTCTACCTTTGTTTCTGGACTAGTGCCCATAAGGTTTTA
TGATTCAGCTGTCATGGTCCTTTGGGGCATTCCTTTGCTTTTCATGTGCTGAAAAGGGTG
AGCAGGTGCAAAGCAAGCCACGTTTCTCACTGGTGTTGTAGGAGGGGCTGGGGAGGCCTT
ATGTGTGTCAGGCAGGCATTTTTTACTCTGATGTCACCAACATGCTCCACCCCCCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U620_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U620_MOUSE

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-112, gnl|bosTau2|chr5 (9837026-9837137)
               

               
               1-112, gnl|canFam2|chr15 (27957149-27957276)
               

               
               1-112, gnl|danRer3|chr4 (8332630-8332758)
               

               
               1-112, gnl|dasNov1|scaffold_6884 (102626-102499)
               

               
               1-112, gnl|echTel1|scaffold_35095 (4212-4085)
               

               
               1-112, gnl|fr1|chrUn (8137030-8136911)
               

               
               1-112, gnl|galGal2|chr1 (37863269-37863397)
               

               
               1-112, gnl|hg17|chr12 (81947144-81947272)
               

               
               1-112, gnl|Hg17|chr12 (81947154-81947265)
               

               
               1-112, gnl|loxAfr1|scaffold_1853 (140872-140745)
               

               
               1-112, gnl|mm7|chr10 (104716049-104715922)
               

               
               1-112, gnl|Mm7|chr10 (104716037-104715926)
               

               
               1-112, gnl|panTro1|chr10 (83825189-83825317)
               

               
               1-112, gnl|rheMac2|chr11 (80031004-80031131)
               

               
               1-112, gnl|tetNig1|chr13 (1797347-1797224)
               

               
               1-112, gnl|xenTro1|scaffold_4 (2088052-2088179)
               


               
               177-1121, gnl|bosTau2|chr5 (9900605-9901534)
               

               
               177-1121, gnl|Hg17|chr12 (82028457-82029400)
               

               
               177-1121, gnl|Mm7|chr10 (104651405-104650487)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr5 (9837026-9837137)
               

               
               1-112, gnl|canFam2|chr15 (27957149-27957276)
               

               
               1-112, gnl|danRer3|chr4 (8332630-8332758)
               

               
               1-112, gnl|dasNov1|scaffold_6884 (102626-102499)
               

               
               1-112, gnl|echTel1|scaffold_35095 (4212-4085)
               

               
               1-112, gnl|fr1|chrUn (8137030-8136911)
               

               
               1-112, gnl|galGal2|chr1 (37863269-37863397)
               

               
               1-112, gnl|hg17|chr12 (81947144-81947272)
               

               
               1-112, gnl|Hg17|chr12 (81947154-81947265)
               

               
               1-112, gnl|loxAfr1|scaffold_1853 (140872-140745)
               

               
               1-112, gnl|mm7|chr10 (104716049-104715922)
               

               
               1-112, gnl|Mm7|chr10 (104716037-104715926)
               

               
               1-112, gnl|panTro1|chr10 (83825189-83825317)
               

               
               1-112, gnl|rheMac2|chr11 (80031004-80031131)
               

               
               1-112, gnl|tetNig1|chr13 (1797347-1797224)
               

               
               1-112, gnl|xenTro1|scaffold_4 (2088052-2088179)
               


               
               177-1121, gnl|bosTau2|chr5 (9900605-9901534)
               

               
               177-1121, gnl|Hg17|chr12 (82028457-82029400)
               

               
               177-1121, gnl|Mm7|chr10 (104651405-104650487)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	1-112, gnl\|bosTau2\|chr5 (9837026-9837137)
	1-112, gnl\|canFam2\|chr15 (27957149-27957276)
	1-112, gnl\|danRer3\|chr4 (8332630-8332758)
	1-112, gnl\|dasNov1\|scaffold_6884 (102626-102499)
	1-112, gnl\|echTel1\|scaffold_35095 (4212-4085)
	1-112, gnl\|fr1\|chrUn (8137030-8136911)
	1-112, gnl\|galGal2\|chr1 (37863269-37863397)
	1-112, gnl\|hg17\|chr12 (81947144-81947272)
	1-112, gnl\|Hg17\|chr12 (81947154-81947265)
	1-112, gnl\|loxAfr1\|scaffold_1853 (140872-140745)
	1-112, gnl\|mm7\|chr10 (104716049-104715922)
	1-112, gnl\|Mm7\|chr10 (104716037-104715926)
	1-112, gnl\|panTro1\|chr10 (83825189-83825317)
	1-112, gnl\|rheMac2\|chr11 (80031004-80031131)
	1-112, gnl\|tetNig1\|chr13 (1797347-1797224)
	1-112, gnl\|xenTro1\|scaffold_4 (2088052-2088179)

	177-1121, gnl\|bosTau2\|chr5 (9900605-9901534)
	177-1121, gnl\|Hg17\|chr12 (82028457-82029400)
	177-1121, gnl\|Mm7\|chr10 (104651405-104650487)

	ece (0.229305)
	cki (0.165235)
	spl (0.143184)
	ese (0.126502)
	bla (0.124347)