Ss1.1-Thy1-THY010054A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCAAACTTGCAGCGGCGATTGCAGCAGTTGCTGCCGCGGCGCCGCGGCCCGAGGGCTC CTGCGGCTGCTCGCGCCCAGCCGGACGCCGAGGAGCACGACCCGGACCGAGACGGACACT CTCCCCGCCGCCCGCCTGCCACTGACGCGGGCCCCCCCAGCCCCAGAGAGAGCCGCGCGT AAAAAAAAAAAAAAAAAAAAAAAAAGCCCTTCGCCCCCTCCTCCCCTTTCCTGCCTCTGC GAGGACACCCCCCTCCCTCCTGCTCCGCCAGCCCCGGCGCCCCTTCCTCGGAAGCCGAGC GGCTTCGCTCGCATTTCGCCGCCGCCGCCTCGCGCAGTCTTGCAATATAGGGGAAAAGCA GACCATGGTGAACCCGGGCAGCAGCTCCCAGCCGCCCCCGGTGACGGCCGGCTCCCTCTC CTGGAAGCGGTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCTTTCTGCTCTATGCCAT GGACAGCTACTGGCACAGCCGGTGCCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGA CATCGGCACGTCCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAAATGACTACATTAG GTTATTTGGGAATAGCGGTGCTTGCAGTGCTTGTGGACAGTCTATTCCTGCGAGCGAGCT GGTCATGCGGGCCCAAGGCAATGTGTATCATCTGAAGTGTTTTACATGCTCTACCTGCCG GAATCGCCTGGTCCCAGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACA TGATAGACCTACAGCTCTCATCAATGGCCATTTGAATTCACTTCAGAGCAATCCACTACT GCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTGATGCAGAATGCGTGCCTTCATCTCAG ATTTTGTTCATCGCAGGTGGATCCCCTGTGTCTTCAGTAGACAAGTCACCTTTGTAGCAC CAGTGCCAGCTCCATGCCATTGCACCTTCTTTAGTCTTGATTGCCCTTCCCGCATTTATT GGTGTATTAAAATGACTGAATATGAACATTAAGGACGCCATGAACCTGGGCTAATGGGAG ACTGTAGAGAAAATGAAAAAAGATCCACCGGAGGACATCTTTGGGGGGGAGGGAGCTTGG GAGGAGGGAGATGACTAATGAAGCTAATTAAAAGAAGCATTCAAATCTGCTTTCTACCCT CATTAACAATTAGCAGGGCACTGGCCAGAGTTGGCACCCTGCGTTTTACCTTTCCAACAT TCTCTTTGCTCTTTGTATATTTAAGTGTCGTAAGGAAATGTGTTTCAATCAAAACTGAAC ATGAGATAAAGGAAAGATGTGGCTTTTGTGATATTCTATCACAAACACTTTTATTGTATC TCTCTGTAAAATACAATGTATGTATATGCATGTAAGTGTTTTTGTCCTGATGTTGCTACT CCCATGGCAAAGGAAAAAAAAAGAATGAAAAAAAGAAAAAAAAAAAAAATCATTGGAAAA AAAAAAAAATCAGGCTCCTAGCAGCTACTGTGTAGAAATTTCCCCCTACTTCTAATTTGC TGAATGAAGAAAAAAAAAATCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCAAACTTGCAGCGGCGATTGCAGCAGTTGCTGCCGCGGCGCCGCGGCCCGAGGGCTC CTGCGGCTGCTCGCGCCCAGCCGGACGCCGAGGAGCACGACCCGGACCGAGACGGACACT CTCCCCGCCGCCCGCCTGCCACTGACGCGGGCCCCCCCAGCCCCAGAGAGAGCCGCGCGT AAAAAAAAAAAAAAAAAAAAAAAAAGCCCTTCGCCCCCTCCTCCCCTTTCCTGCCTCTGC GAGGACACCCCCCTCCCTCCTGCTCCGCCAGCCCCGGCGCCCCTTCCTCGGAAGCCGAGC GGCTTCGCTCGCATTTCGCCGCCGCCGCCTCGCGCAGTCTTGCAATATAGGGGAAAAGCA GACCATGGTGAACCCGGGCAGCAGCTCCCAGCCGCCCCCGGTGACGGCCGGCTCCCTCTC CTGGAAGCGGTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCTTTCTGCTCTATGCCAT GGACAGCTACTGGCACAGCCGGTGCCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGA CATCGGCACGTCCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAAATGACTACATTAG GTTATTTGGGAATAGCGGTGCTTGCAGTGCTTGTGGACAGTCTATTCCTGCGAGCGAGCT GGTCATGCGGGCCCAAGGCAATGTGTATCATCTGAAGTGTTTTACATGCTCTACCTGCCG GAATCGCCTGGTCCCAGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACA TGATAGACCTACAGCTCTCATCAATGGCCATTTGAATTCACTTCAGAGCAATCCACTACT GCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTGATGCAGAATGCGTGCCTTCATCTCAG ATTTTGTTCATCGCAGGTGGATCCCCTGTGTCTTCAGTAGACAAGTCACCTTTGTAGCAC CAGTGCCAGCTCCATGCCATTGCACCTTCTTTAGTCTTGATTGCCCTTCCCGCATTTATT GGTGTATTAAAATGACTGAATATGAACATTAAGGACGCCATGAACCTGGGCTAATGGGAG ACTGTAGAGAAAATGAAAAAAGATCCACCGGAGGACATCTTTGGGGGGGAGGGAGCTTGG GAGGAGGGAGATGACTAATGAAGCTAATTAAAAGAAGCATTCAAATCTGCTTTCTACCCT CATTAACAATTAGCAGGGCACTGGCCAGAGTTGGCACCCTGCGTTTTACCTTTCCAACAT TCTCTTTGCTCTTTGTATATTTAAGTGTCGTAAGGAAATGTGTTTCAATCAAAACTGAAC ATGAGATAAAGGAAAGATGTGGCTTTTGTGATATTCTATCACAAACACTTTTATTGTATC TCTCTGTAAAATACAATGTATGTATATGCATGTAAGTGTTTTTGTCCTGATGTTGCTACT CCCATGGCAAAGGAAAAAAAAAGAATGAAAAAAAGAAAAAAAAAAAAAATCATTGGAAAA AAAAAAAAATCAGGCTCCTAGCAGCTACTGTGTAGAAATTTCCCCCTACTTCTAATTTGC TGAATGAAGAAAAAAAAAATCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 693-787, + strand, RNAz p=0.52523 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 693-787, + strand, RNAz p=0.52523 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 358-602, gnl|bosTau2|chr3 (41501402-41501158) | |
| 358-602, gnl|Hg17|chr1 (87509713-87509957) | |
| 358-602, gnl|Mm7|chr3 (144094994-144094750) | |
| 693-855, gnl|bosTau2|chr3 (41493407-41493245) | |
| 693-855, gnl|canFam2|chr6 (63957801-63957563) | |
| 693-855, gnl|danRer3|chrUn (127642089-127642327) | |
| 693-855, gnl|dasNov1|scaffold_40954 (1179-947) | |
| 693-855, gnl|echTel1|scaffold_312968 (49101-48865) | |
| 693-855, gnl|fr1|chrUn (88434621-88434876) | |
| 693-855, gnl|galGal2|chr8 (16064042-16063810) | |
| 693-855, gnl|hg17|chr1 (87517680-87517918) | |
| 693-855, gnl|Hg17|chr1 (87517746-87517908) | |
| 693-855, gnl|loxAfr1|scaffold_18387 (40462-40699) | |
| 693-855, gnl|mm7|chr3 (144087041-144086825) | |
| 693-855, gnl|Mm7|chr3 (144086995-144086833) | |
| 693-855, gnl|monDom2|scaffold_123 (1355046-1355283) | |
| 693-855, gnl|oryCun1|scaffold_208567 (65094-64871) | |
| 693-855, gnl|rheMac2|chr1 (90041163-90041400) | |
| 693-855, gnl|rn3|chr2 (242496265-242496483) | |
| 693-855, gnl|tetNig1|chrUn_random (87842833-87843085) | |
| 693-855, gnl|xenTro1|scaffold_939 (185960-186207) | |
| 1468-1577, gnl|bosTau2|chr18 (22564830-22564933) | |
| 1468-1577, gnl|Hg17|chr1 (87523088-87523203) | |
| 1468-1577, gnl|Mm7|chr3 (144081659-144081555) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 358-602, gnl|bosTau2|chr3 (41501402-41501158) | |
| 358-602, gnl|Hg17|chr1 (87509713-87509957) | |
| 358-602, gnl|Mm7|chr3 (144094994-144094750) | |
| 693-855, gnl|bosTau2|chr3 (41493407-41493245) | |
| 693-855, gnl|canFam2|chr6 (63957801-63957563) | |
| 693-855, gnl|danRer3|chrUn (127642089-127642327) | |
| 693-855, gnl|dasNov1|scaffold_40954 (1179-947) | |
| 693-855, gnl|echTel1|scaffold_312968 (49101-48865) | |
| 693-855, gnl|fr1|chrUn (88434621-88434876) | |
| 693-855, gnl|galGal2|chr8 (16064042-16063810) | |
| 693-855, gnl|hg17|chr1 (87517680-87517918) | |
| 693-855, gnl|Hg17|chr1 (87517746-87517908) | |
| 693-855, gnl|loxAfr1|scaffold_18387 (40462-40699) | |
| 693-855, gnl|mm7|chr3 (144087041-144086825) | |
| 693-855, gnl|Mm7|chr3 (144086995-144086833) | |
| 693-855, gnl|monDom2|scaffold_123 (1355046-1355283) | |
| 693-855, gnl|oryCun1|scaffold_208567 (65094-64871) | |
| 693-855, gnl|rheMac2|chr1 (90041163-90041400) | |
| 693-855, gnl|rn3|chr2 (242496265-242496483) | |
| 693-855, gnl|tetNig1|chrUn_random (87842833-87843085) | |
| 693-855, gnl|xenTro1|scaffold_939 (185960-186207) | |
| 1468-1577, gnl|bosTau2|chr18 (22564830-22564933) | |
| 1468-1577, gnl|Hg17|chr1 (87523088-87523203) | |
| 1468-1577, gnl|Mm7|chr3 (144081659-144081555) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| aor (0.976372) | |
| fco (0.78604) | |
| fcc (0.593354) | |
| sto (0.539471) | |
| amn (0.417711) | |
| hea (0.408998) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| nco (0.323468) | |
| eje (0.296501) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| tes (0.207814) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.976372) | |
| fco (0.78604) | |
| fcc (0.593354) | |
| sto (0.539471) | |
| amn (0.417711) | |
| hea (0.408998) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| nco (0.323468) | |
| eje (0.296501) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| tes (0.207814) | |
| col (0.195008) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| jej (0.0989218) |