Ss1.1-Thy1-THY010054B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGATGTCAGTCTGGTAAATTGTTGTTGATGATTTTCTTGCATTTTAGGCCAATGTGGTC CTTTTCCTATCAGCGGTATTTGGAATGTATACAGATTGTCATCCACTTGTTGCTTAGCAT TACCATAAATGTATCTTTTCCACTCAACTAGCTGCGTTCGTCCTACACGAAGTCTCTTAG TTCAATGAGCTAGTGTCACTGGGAACTAACTGAAGAACTACTGTCAGAGAAGTTCCTATC TCCTGGCCTTTGTAGAAAGACGTCTCTGCGTGGTAAAAAGGGAGGCTTTCCTTGTAACCT AGGCACGCTGCAACGCCAGTGTTTAATTTAGAAGCCGTGATGAATTGCTCTTTTGAATTT ACTCTAAGTCATGCGTGTGTTAGAATACAGATGAACCTCCTTTAATTTTCACAGGCACGG TCACAAACTGTACTGTGTCTGCACCAACTTCTCAGATAATGAGGCGCAGGGTTATTTGCA TTTAAATTGTGGTCCTGCCCACGTGTGAGAACTCGGAGCCACCAGTGGGGCTGCCTTGCC GGGAGGGAGGAGACGAGGAGACGGGCGGAGGAGCGTGGGGAGAAGAGTGATTGGCTATCT ATTTGGGTCAGTGTTCATTTTACAAAGGTGATGGGGGGATAGTTTGTTAGGTGATGGCAG AGGCTTTTTGTGTTTAAACAAGGGATTACAATTGGATGGGCTTCTTTTCAACCCTTTAAC ATACTGAATTTTCCTAGGGTGGTGACTAGCTCTAATGAAAATTCAAGGGAAGGGAAAAAT GGCCTCTACATGCAGAGGATGTAACCTGATTTTTTAAAAACATACAATATTACATTGTGT GTGTAGGCTTAAAATGATGAATAATCAAACTTAATATACATCGGTTCTTACAAATGTTTT ACACCGTACCCTGTAGCTGCCATTACTTACACAGAAATTGGAATTTTTGTAGCTGCTCAA TTTCTTGGACTCTGTACAGGATACATATATACGTACAATGGGACATATGTACTGGTTCTT CCTTTGACTGCCGCTCAGGAGAGGAACACCATCCTGAAGCATTTTGGTTACCCTTACACC ATTCTAAACCTGCTGTTTGGGGAAATATATTAGTTCCTTTCTCATTTATAAGGCTGTTGT ATCATTAGTTTTCTATGTGATTCGGGTGTATTTATTTGGTGAAAGGGGCTTGTAATTATA ACATAGGAAACCACACCTAACTGTATTGCCAAATTCCTTGTAAACTACCTGTGGCGTCTG TGCTTTCCGGGCTGCGTGCTCTTCCTCTTGATACTGCGACGGCACCATTGTAATTAGTTC ATTCCATTCCATGAGCATCTCCCTTTAAGTGGTTCCTAGATGGTTTAATAAAGAGAAACT GTGTTCTCAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGATGTCAGTCTGGTAAATTGTTGTTGATGATTTTCTTGCATTTTAGGCCAATGTGGTC CTTTTCCTATCAGCGGTATTTGGAATGTATACAGATTGTCATCCACTTGTTGCTTAGCAT TACCATAAATGTATCTTTTCCACTCAACTAGCTGCGTTCGTCCTACACGAAGTCTCTTAG TTCAATGAGCTAGTGTCACTGGGAACTAACTGAAGAACTACTGTCAGAGAAGTTCCTATC TCCTGGCCTTTGTAGAAAGACGTCTCTGCGTGGTAAAAAGGGAGGCTTTCCTTGTAACCT AGGCACGCTGCAACGCCAGTGTTTAATTTAGAAGCCGTGATGAATTGCTCTTTTGAATTT ACTCTAAGTCATGCGTGTGTTAGAATACAGATGAACCTCCTTTAATTTTCACAGGCACGG TCACAAACTGTACTGTGTCTGCACCAACTTCTCAGATAATGAGGCGCAGGGTTATTTGCA TTTAAATTGTGGTCCTGCCCACGTGTGAGAACTCGGAGCCACCAGTGGGGCTGCCTTGCC GGGAGGGAGGAGACGAGGAGACGGGCGGAGGAGCGTGGGGAGAAGAGTGATTGGCTATCT ATTTGGGTCAGTGTTCATTTTACAAAGGTGATGGGGGGATAGTTTGTTAGGTGATGGCAG AGGCTTTTTGTGTTTAAACAAGGGATTACAATTGGATGGGCTTCTTTTCAACCCTTTAAC ATACTGAATTTTCCTAGGGTGGTGACTAGCTCTAATGAAAATTCAAGGGAAGGGAAAAAT GGCCTCTACATGCAGAGGATGTAACCTGATTTTTTAAAAACATACAATATTACATTGTGT GTGTAGGCTTAAAATGATGAATAATCAAACTTAATATACATCGGTTCTTACAAATGTTTT ACACCGTACCCTGTAGCTGCCATTACTTACACAGAAATTGGAATTTTTGTAGCTGCTCAA TTTCTTGGACTCTGTACAGGATACATATATACGTACAATGGGACATATGTACTGGTTCTT CCTTTGACTGCCGCTCAGGAGAGGAACACCATCCTGAAGCATTTTGGTTACCCTTACACC ATTCTAAACCTGCTGTTTGGGGAAATATATTAGTTCCTTTCTCATTTATAAGGCTGTTGT ATCATTAGTTTTCTATGTGATTCGGGTGTATTTATTTGGTGAAAGGGGCTTGTAATTATA ACATAGGAAACCACACCTAACTGTATTGCCAAATTCCTTGTAAACTACCTGTGGCGTCTG TGCTTTCCGGGCTGCGTGCTCTTCCTCTTGATACTGCGACGGCACCATTGTAATTAGTTC ATTCCATTCCATGAGCATCTCCCTTTAAGTGGTTCCTAGATGGTTTAATAAAGAGAAACT GTGTTCTCAGTG |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 33-679, gnl|bosTau2|chr2 (12997219-12997857) | |
| 33-679, gnl|canFam2|chr5 (14502983-14502017) | |
| 33-679, gnl|dasNov1|scaffold_730 (140368-141319) | |
| 33-679, gnl|echTel1|scaffold_311408 (23316-22319) | |
| 33-679, gnl|hg17|chr11 (122188746-122189673) | |
| 33-679, gnl|Hg17|chr11 (122189075-122189695) | |
| 33-679, gnl|mm7|chr9 (40943104-40942206) | |
| 33-679, gnl|Mm7|chr9 (40942761-40942182) | |
| 33-679, gnl|monDom2|scaffold_2 (114020051-114019129) | |
| 33-679, gnl|oryCun1|scaffold_193904 (63044-62125) | |
| 33-679, gnl|panTro1|chr9 (124229668-124230595) | |
| 33-679, gnl|rheMac2|chr14 (121185437-121186363) | |
| 33-679, gnl|rn3|chr8 (44000106-43999173) | |
| 981-1391, gnl|bosTau2|chr2 (12998021-12998431) | |
| 981-1391, gnl|canFam2|chr5 (14501720-14501288) | |
| 981-1391, gnl|dasNov1|scaffold_730 (141597-142019) | |
| 981-1391, gnl|echTel1|scaffold_244258 (1427-1021) | |
| 981-1391, gnl|galGal2|chr24 (3056412-3055967) | |
| 981-1391, gnl|hg17|chr11 (122189959-122190376) | |
| 981-1391, gnl|Hg17|chr11 (122190002-122190388) | |
| 981-1391, gnl|loxAfr1|scaffold_15152 (67699-67277) | |
| 981-1391, gnl|mm7|chr9 (40941951-40941533) | |
| 981-1391, gnl|Mm7|chr9 (40941927-40941515) | |
| 981-1391, gnl|monDom2|scaffold_2 (114018841-114018450) | |
| 981-1391, gnl|oryCun1|scaffold_193904 (61823-61405) | |
| 981-1391, gnl|panTro1|chr9 (124230881-124231297) | |
| 981-1391, gnl|rheMac2|chr14 (121186653-121187069) | |
| 981-1391, gnl|rn3|chr8 (43998919-43998491) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-679, gnl|bosTau2|chr2 (12997219-12997857) | |
| 33-679, gnl|canFam2|chr5 (14502983-14502017) | |
| 33-679, gnl|dasNov1|scaffold_730 (140368-141319) | |
| 33-679, gnl|echTel1|scaffold_311408 (23316-22319) | |
| 33-679, gnl|hg17|chr11 (122188746-122189673) | |
| 33-679, gnl|Hg17|chr11 (122189075-122189695) | |
| 33-679, gnl|mm7|chr9 (40943104-40942206) | |
| 33-679, gnl|Mm7|chr9 (40942761-40942182) | |
| 33-679, gnl|monDom2|scaffold_2 (114020051-114019129) | |
| 33-679, gnl|oryCun1|scaffold_193904 (63044-62125) | |
| 33-679, gnl|panTro1|chr9 (124229668-124230595) | |
| 33-679, gnl|rheMac2|chr14 (121185437-121186363) | |
| 33-679, gnl|rn3|chr8 (44000106-43999173) | |
| 981-1391, gnl|bosTau2|chr2 (12998021-12998431) | |
| 981-1391, gnl|canFam2|chr5 (14501720-14501288) | |
| 981-1391, gnl|dasNov1|scaffold_730 (141597-142019) | |
| 981-1391, gnl|echTel1|scaffold_244258 (1427-1021) | |
| 981-1391, gnl|galGal2|chr24 (3056412-3055967) | |
| 981-1391, gnl|hg17|chr11 (122189959-122190376) | |
| 981-1391, gnl|Hg17|chr11 (122190002-122190388) | |
| 981-1391, gnl|loxAfr1|scaffold_15152 (67699-67277) | |
| 981-1391, gnl|mm7|chr9 (40941951-40941533) | |
| 981-1391, gnl|Mm7|chr9 (40941927-40941515) | |
| 981-1391, gnl|monDom2|scaffold_2 (114018841-114018450) | |
| 981-1391, gnl|oryCun1|scaffold_193904 (61823-61405) | |
| 981-1391, gnl|panTro1|chr9 (124230881-124231297) | |
| 981-1391, gnl|rheMac2|chr14 (121186653-121187069) | |
| 981-1391, gnl|rn3|chr8 (43998919-43998491) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| thg (0.507164) | |
| liv (0.292569) | |
| fco (0.157208) | |
| lin (0.145603) | |
| tra (0.123092) | |
| ebs (0.118301) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.507164) | |
| liv (0.292569) | |
| fco (0.157208) | |
| lin (0.145603) | |
| tra (0.123092) | |
| ebs (0.118301) |