Ss1.1-Thy1-THY010054C08.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTGCTCGTTGTTCCACACGACCGAGGTCTCTGTGTCGCTGACGTACCCGTCGTCCCCTGT GTAGTGCGTCGGGTAGATGAGCAGGGGCTCCACGGAGAAGGCGCGCAGGTTTCGGGGTGA GAAGTGGGCCTTGTACTCCGACACTGGGTGCTTGTCAAACATGACCGGCAAGAACTCATC CACGGGCAGCATCTTGGAGAGCGGCCGGGCGGCCAGCAGCTTGCGGGCGCCTTGCAGGGA GATCACGTAGGCCAGCGTCCAGTAGGAGTAGTCGGCCTCCACCAGATTCCTCACACGGGG CACAGCCTTCTCCGGGTGCTCCACCTGCATCCGCTTCCGGCCCACATAGATGAGGTCCCA GTCCAGGCCCTCCCGCTCCACATCCCGCATAAGGTTCATCAGGCGCCTCTTGAAGAAAAT CTCAAAGCGCAGGTCGTCCTCAAATACGAGTGATTTCTGCAGCCCACGGTCCACAACCTC CTTCCAGATGTTATAGTGGCTGAGGAAGCAGCCCAGTTCGCCCTTGGTGAGGGGCCTTCC ATGGTAGGGGTCCCGGTAGCCAGGCAGCATCTGGATGCCCAGCGCCTCCACCTGGCTCGT GTTCATGGCTTTGCCGTCCACAGCCTCCACCAGCCGGGACTCTATCTCCTGCTCCTGCAG CGCCCGCAGCATGCGATCCCGCCGGTCCTGGCGCCGCTTCAGATTGATCATGAAGACCTC ATCAAAGCCCATCTTGTCTGGCTTCTTCGTGGGGACCGAGATAAACTGCGAGGGCTCCGC TGGCGGGTGTTTCACCATGACCTCCAGCTGCACATGCATGAAGCTCTCAGCCTCGTCCTG GAGGCTGCTGTGTGACCGCAGTGGCACCGGCAGGAAGCCGTATACCTCCTTGTTGCAGAC ATACATCTGGACTTCTGCCTGCTTGCAGGAGAAGGCAAAAACAATGATGTCATCGAAGGA CCAGGTGTAGTCAGGGTGGGGAGGGTAGAACGCCAAGTTCCTGGATGCCGCCTTCCGCAG GTCGATCAGGAAGGTCGAGTGCACCATGGGGACTGCAAAGCAGCCCTGGCGGTCCCGCTT GCGGATGGGGATGTAGGCAGGCGTGCGCTTGTAGTAGCCCTGGGAAGTCATCCCACACCA GAAGTTGGAGTACGCGGCCCGGGAATCCAGCATGGGGGCCACCACCGTCTTGTTCTCAGC AATGAGCAGGCTCAGCGTGTCAGGGTTGAGGATCAGGTTGTCTGCATCTACAAACAGGAT GTAGTCAGCCCACATGTCCCGGGCTGATTTCAGGGCTGCCTGGCGCAACTTCATGACATG CTCATAGCGTGAGTCAGACCAGTGTTTGGGGCCCTCCTCGTCTGGGTAGGACCTGGGCTC CTCTGCTGGCCGCCACTCTACAGAGTGGTACAAACTTTTCACGGCCACCAACCATTCCCG AAGCACGGCTGACGTGTTGTCGGAGTTGTGGTCTGTGGCTACCCACAGCGCCGTGCGCTC CCGCGGGTGCCGCAGCCGCTCCAGAGCCCCCAGCGTGGAGGGCAACGCGTGGGCCGCGTT GCGCGCCAGCAGCGCGATGAGCACACGCGGCGCCTGCAGCGGCGACTCCGGGCTCCAGCG CTCCTCTGGGAAGTAGGCGGCGGCGCCCGGCGGACCCCCCGGAGGTGATAGCGCCAACAG CAGCAGGAGCAGCAGCGCCAGGAGCGGCTGCCGGTGTCGCCGGCACACGCGTGGGGCCGC CGCCATCGCGCCACGCGTCGCCTTTAAACTGCTTTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTGCTCGTTGTTCCACACGACCGAGGTCTCTGTGTCGCTGACGTACCCGTCGTCCCCTGT GTAGTGCGTCGGGTAGATGAGCAGGGGCTCCACGGAGAAGGCGCGCAGGTTTCGGGGTGA GAAGTGGGCCTTGTACTCCGACACTGGGTGCTTGTCAAACATGACCGGCAAGAACTCATC CACGGGCAGCATCTTGGAGAGCGGCCGGGCGGCCAGCAGCTTGCGGGCGCCTTGCAGGGA GATCACGTAGGCCAGCGTCCAGTAGGAGTAGTCGGCCTCCACCAGATTCCTCACACGGGG CACAGCCTTCTCCGGGTGCTCCACCTGCATCCGCTTCCGGCCCACATAGATGAGGTCCCA GTCCAGGCCCTCCCGCTCCACATCCCGCATAAGGTTCATCAGGCGCCTCTTGAAGAAAAT CTCAAAGCGCAGGTCGTCCTCAAATACGAGTGATTTCTGCAGCCCACGGTCCACAACCTC CTTCCAGATGTTATAGTGGCTGAGGAAGCAGCCCAGTTCGCCCTTGGTGAGGGGCCTTCC ATGGTAGGGGTCCCGGTAGCCAGGCAGCATCTGGATGCCCAGCGCCTCCACCTGGCTCGT GTTCATGGCTTTGCCGTCCACAGCCTCCACCAGCCGGGACTCTATCTCCTGCTCCTGCAG CGCCCGCAGCATGCGATCCCGCCGGTCCTGGCGCCGCTTCAGATTGATCATGAAGACCTC ATCAAAGCCCATCTTGTCTGGCTTCTTCGTGGGGACCGAGATAAACTGCGAGGGCTCCGC TGGCGGGTGTTTCACCATGACCTCCAGCTGCACATGCATGAAGCTCTCAGCCTCGTCCTG GAGGCTGCTGTGTGACCGCAGTGGCACCGGCAGGAAGCCGTATACCTCCTTGTTGCAGAC ATACATCTGGACTTCTGCCTGCTTGCAGGAGAAGGCAAAAACAATGATGTCATCGAAGGA CCAGGTGTAGTCAGGGTGGGGAGGGTAGAACGCCAAGTTCCTGGATGCCGCCTTCCGCAG GTCGATCAGGAAGGTCGAGTGCACCATGGGGACTGCAAAGCAGCCCTGGCGGTCCCGCTT GCGGATGGGGATGTAGGCAGGCGTGCGCTTGTAGTAGCCCTGGGAAGTCATCCCACACCA GAAGTTGGAGTACGCGGCCCGGGAATCCAGCATGGGGGCCACCACCGTCTTGTTCTCAGC AATGAGCAGGCTCAGCGTGTCAGGGTTGAGGATCAGGTTGTCTGCATCTACAAACAGGAT GTAGTCAGCCCACATGTCCCGGGCTGATTTCAGGGCTGCCTGGCGCAACTTCATGACATG CTCATAGCGTGAGTCAGACCAGTGTTTGGGGCCCTCCTCGTCTGGGTAGGACCTGGGCTC CTCTGCTGGCCGCCACTCTACAGAGTGGTACAAACTTTTCACGGCCACCAACCATTCCCG AAGCACGGCTGACGTGTTGTCGGAGTTGTGGTCTGTGGCTACCCACAGCGCCGTGCGCTC CCGCGGGTGCCGCAGCCGCTCCAGAGCCCCCAGCGTGGAGGGCAACGCGTGGGCCGCGTT GCGCGCCAGCAGCGCGATGAGCACACGCGGCGCCTGCAGCGGCGACTCCGGGCTCCAGCG CTCCTCTGGGAAGTAGGCGGCGGCGCCCGGCGGACCCCCCGGAGGTGATAGCGCCAACAG CAGCAGGAGCAGCAGCGCCAGGAGCGGCTGCCGGTGTCGCCGGCACACGCGTGGGGCCGC CGCCATCGCGCCACGCGTCGCCTTTAAACTGCTTTT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 99 entry(ies) | More info |
Aligned organism(s): 99 entry(ies) | Help | Less info |
136-356, gnl|bosTau2|chr7 (4824956-4825176) | |
136-356, gnl|canFam2|chr20 (48257332-48257106) | |
136-356, gnl|danRer3|chr1 (55687383-55687603) | |
136-356, gnl|dasNov1|scaffold_1734 (53057-52844) | |
136-356, gnl|echTel1|scaffold_286053 (4959-4736) | |
136-356, gnl|fr1|chrUn (38765290-38765510) | |
136-356, gnl|galGal2|chr17 (5805014-5805234) | |
136-356, gnl|hg17|chr19 (17552497-17552722) | |
136-356, gnl|Hg17|chr19 (17552721-17552501) | |
136-356, gnl|loxAfr1|scaffold_17207 (47949-47725) | |
136-356, gnl|mm7|chr8 (70090240-70090465) | |
136-356, gnl|Mm7|chr8 (70090464-70090244) | |
136-356, gnl|monDom2|scaffold_106 (1143819-1143596) | |
136-356, gnl|panTro1|chr20 (18544208-18544433) | |
136-356, gnl|rheMac2|chr19 (17135647-17135872) | |
136-356, gnl|rn3|chr16 (18821410-18821635) | |
136-356, gnl|tetNig1|chr3 (11174729-11174943) | |
136-356, gnl|xenTro1|scaffold_115 (145856-146079) | |
146-333, gnl|bosTau2|chr11 (78306994-78306804) | |
146-333, gnl|canFam2|chr9 (58455504-58455286) | |
146-333, gnl|danRer3|chr10 (3031416-3031197) | |
146-333, gnl|dasNov1|scaffold_33785 (8352-8571) | |
146-333, gnl|echTel1|scaffold_297834 (547-328) | |
146-333, gnl|fr1|chrUn (38765286-38765508) | |
146-333, gnl|galGal2|chr17 (5805018-5805234) | |
146-333, gnl|hg17|chr9 (128276233-128276452) | |
146-333, gnl|Hg17|chr9 (128276443-128276253) | |
146-333, gnl|loxAfr1|scaffold_17207 (47944-47725) | |
146-333, gnl|mm7|chr2 (29888216-29888435) | |
146-333, gnl|Mm7|chr2 (29888426-29888236) | |
146-333, gnl|monDom2|scaffold_51 (2946202-2946421) | |
146-333, gnl|panTro1|chr11 (113108674-113108893) | |
146-333, gnl|rheMac2|chr15 (10434055-10433836) | |
146-333, gnl|rn3|chr3 (8869631-8869850) | |
146-333, gnl|tetNig1|chr3 (11174726-11174943) | |
146-333, gnl|xenTro1|scaffold_4287 (10805-10595) | |
476-614, gnl|bosTau2|chr7 (4827924-4828062) | |
476-614, gnl|Hg17|chr19 (17549900-17549763) | |
476-614, gnl|Mm7|chr8 (70089059-70088924) | |
915-1127, gnl|bosTau2|chr16 (48302237-48302449) | |
915-1127, gnl|canFam2|chr7 (20236982-20237232) | |
915-1127, gnl|danRer3|chr1 (55683249-55683028) | |
915-1127, gnl|dasNov1|scaffold_1734 (85466-85716) | |
915-1127, gnl|echTel1|scaffold_290728 (112867-112618) | |
915-1127, gnl|fr1|chrUn (228322504-228322276) | |
915-1127, gnl|galGal2|chr8 (7719101-7719326) | |
915-1127, gnl|hg17|chr1 (180670030-180670281) | |
915-1127, gnl|Hg17|chr1 (180670060-180670269) | |
915-1127, gnl|loxAfr1|scaffold_2123 (88212-87961) | |
915-1127, gnl|mm7|chr1 (152446143-152445893) | |
915-1127, gnl|Mm7|chr1 (152446112-152445903) | |
915-1127, gnl|monDom2|scaffold_16 (37996310-37996552) | |
915-1127, gnl|oryCun1|scaffold_59951 (2690-2911) | |
915-1127, gnl|panTro1|chr1 (163233177-163233428) | |
915-1127, gnl|rheMac2|chr1 (186688222-186687971) | |
915-1127, gnl|rn3|chr13 (67445201-67444951) | |
915-1127, gnl|tetNig1|chrUn_random (42270297-42270514) | |
915-1127, gnl|xenTro1|scaffold_160 (1693360-1693585) | |
926-1124, gnl|bosTau2|chr11 (78300497-78300299) | |
926-1124, gnl|canFam2|chr9 (58461345-58461211) | |
926-1124, gnl|danRer3|chr10 (3042921-3042800) | |
926-1124, gnl|dasNov1|scaffold_1734 (85711-85582) | |
926-1124, gnl|echTel1|scaffold_144399 (782-641) | |
926-1124, gnl|fr1|chrUn (38763965-38764096) | |
926-1124, gnl|galGal2|chr17 (5803661-5803793) | |
926-1124, gnl|hg17|chr9 (128266228-128266362) | |
926-1124, gnl|Hg17|chr9 (128266436-128266238) | |
926-1124, gnl|loxAfr1|scaffold_18018 (4939-4808) | |
926-1124, gnl|mm7|chr2 (29880105-29880238) | |
926-1124, gnl|Mm7|chr2 (29880312-29880114) | |
926-1124, gnl|monDom2|scaffold_51 (2942087-2942227) | |
926-1124, gnl|oryCun1|scaffold_198463 (53890-54020) | |
926-1124, gnl|panTro1|chr11 (113098438-113098572) | |
926-1124, gnl|rheMac2|chr15 (10445567-10445433) | |
926-1124, gnl|rn3|chr3 (8862797-8862930) | |
926-1124, gnl|tetNig1|chr3 (11173406-11173537) | |
926-1124, gnl|xenTro1|scaffold_4287 (14650-14515) | |
1255-1375, gnl|bosTau2|chr7 (4843256-4843376) | |
1255-1375, gnl|canFam2|chr20 (48273826-48273744) | |
1255-1375, gnl|danRer3|chr1 (55680827-55680896) | |
1255-1375, gnl|dasNov1|scaffold_273743 (623-541) | |
1255-1375, gnl|echTel1|scaffold_303268 (265-183) | |
1255-1375, gnl|fr1|chrUn (38763508-38763590) | |
1255-1375, gnl|galGal2|chr17 (5803259-5803341) | |
1255-1375, gnl|hg17|chr19 (17532154-17532236) | |
1255-1375, gnl|Hg17|chr19 (17532274-17532154) | |
1255-1375, gnl|loxAfr1|scaffold_18018 (12502-12420) | |
1255-1375, gnl|mm7|chr8 (70080068-70080150) | |
1255-1375, gnl|Mm7|chr8 (70080188-70080068) | |
1255-1375, gnl|monDom2|scaffold_51 (2941380-2941462) | |
1255-1375, gnl|oryCun1|scaffold_198463 (52960-53042) | |
1255-1375, gnl|panTro1|chr20 (18522947-18523029) | |
1255-1375, gnl|rheMac2|chr15 (10446818-10446736) | |
1255-1375, gnl|rn3|chr16 (18812772-18812854) | |
1255-1375, gnl|tetNig1|chr3 (11173019-11173088) | |
1255-1375, gnl|xenTro1|scaffold_4287 (15541-15459) | |
1445-1776, gnl|bosTau2|chr7 (4845566-4845898) | |
1445-1776, gnl|Hg17|chr19 (17527837-17527493) | |
1445-1776, gnl|Mm7|chr8 (70078640-70078331) |
Aligned organism(s): 99 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
136-356, gnl|bosTau2|chr7 (4824956-4825176) | |
136-356, gnl|canFam2|chr20 (48257332-48257106) | |
136-356, gnl|danRer3|chr1 (55687383-55687603) | |
136-356, gnl|dasNov1|scaffold_1734 (53057-52844) | |
136-356, gnl|echTel1|scaffold_286053 (4959-4736) | |
136-356, gnl|fr1|chrUn (38765290-38765510) | |
136-356, gnl|galGal2|chr17 (5805014-5805234) | |
136-356, gnl|hg17|chr19 (17552497-17552722) | |
136-356, gnl|Hg17|chr19 (17552721-17552501) | |
136-356, gnl|loxAfr1|scaffold_17207 (47949-47725) | |
136-356, gnl|mm7|chr8 (70090240-70090465) | |
136-356, gnl|Mm7|chr8 (70090464-70090244) | |
136-356, gnl|monDom2|scaffold_106 (1143819-1143596) | |
136-356, gnl|panTro1|chr20 (18544208-18544433) | |
136-356, gnl|rheMac2|chr19 (17135647-17135872) | |
136-356, gnl|rn3|chr16 (18821410-18821635) | |
136-356, gnl|tetNig1|chr3 (11174729-11174943) | |
136-356, gnl|xenTro1|scaffold_115 (145856-146079) | |
146-333, gnl|bosTau2|chr11 (78306994-78306804) | |
146-333, gnl|canFam2|chr9 (58455504-58455286) | |
146-333, gnl|danRer3|chr10 (3031416-3031197) | |
146-333, gnl|dasNov1|scaffold_33785 (8352-8571) | |
146-333, gnl|echTel1|scaffold_297834 (547-328) | |
146-333, gnl|fr1|chrUn (38765286-38765508) | |
146-333, gnl|galGal2|chr17 (5805018-5805234) | |
146-333, gnl|hg17|chr9 (128276233-128276452) | |
146-333, gnl|Hg17|chr9 (128276443-128276253) | |
146-333, gnl|loxAfr1|scaffold_17207 (47944-47725) | |
146-333, gnl|mm7|chr2 (29888216-29888435) | |
146-333, gnl|Mm7|chr2 (29888426-29888236) | |
146-333, gnl|monDom2|scaffold_51 (2946202-2946421) | |
146-333, gnl|panTro1|chr11 (113108674-113108893) | |
146-333, gnl|rheMac2|chr15 (10434055-10433836) | |
146-333, gnl|rn3|chr3 (8869631-8869850) | |
146-333, gnl|tetNig1|chr3 (11174726-11174943) | |
146-333, gnl|xenTro1|scaffold_4287 (10805-10595) | |
476-614, gnl|bosTau2|chr7 (4827924-4828062) | |
476-614, gnl|Hg17|chr19 (17549900-17549763) | |
476-614, gnl|Mm7|chr8 (70089059-70088924) | |
915-1127, gnl|bosTau2|chr16 (48302237-48302449) | |
915-1127, gnl|canFam2|chr7 (20236982-20237232) | |
915-1127, gnl|danRer3|chr1 (55683249-55683028) | |
915-1127, gnl|dasNov1|scaffold_1734 (85466-85716) | |
915-1127, gnl|echTel1|scaffold_290728 (112867-112618) | |
915-1127, gnl|fr1|chrUn (228322504-228322276) | |
915-1127, gnl|galGal2|chr8 (7719101-7719326) | |
915-1127, gnl|hg17|chr1 (180670030-180670281) | |
915-1127, gnl|Hg17|chr1 (180670060-180670269) | |
915-1127, gnl|loxAfr1|scaffold_2123 (88212-87961) | |
915-1127, gnl|mm7|chr1 (152446143-152445893) | |
915-1127, gnl|Mm7|chr1 (152446112-152445903) | |
915-1127, gnl|monDom2|scaffold_16 (37996310-37996552) | |
915-1127, gnl|oryCun1|scaffold_59951 (2690-2911) | |
915-1127, gnl|panTro1|chr1 (163233177-163233428) | |
915-1127, gnl|rheMac2|chr1 (186688222-186687971) | |
915-1127, gnl|rn3|chr13 (67445201-67444951) | |
915-1127, gnl|tetNig1|chrUn_random (42270297-42270514) | |
915-1127, gnl|xenTro1|scaffold_160 (1693360-1693585) | |
926-1124, gnl|bosTau2|chr11 (78300497-78300299) | |
926-1124, gnl|canFam2|chr9 (58461345-58461211) | |
926-1124, gnl|danRer3|chr10 (3042921-3042800) | |
926-1124, gnl|dasNov1|scaffold_1734 (85711-85582) | |
926-1124, gnl|echTel1|scaffold_144399 (782-641) | |
926-1124, gnl|fr1|chrUn (38763965-38764096) | |
926-1124, gnl|galGal2|chr17 (5803661-5803793) | |
926-1124, gnl|hg17|chr9 (128266228-128266362) | |
926-1124, gnl|Hg17|chr9 (128266436-128266238) | |
926-1124, gnl|loxAfr1|scaffold_18018 (4939-4808) | |
926-1124, gnl|mm7|chr2 (29880105-29880238) | |
926-1124, gnl|Mm7|chr2 (29880312-29880114) | |
926-1124, gnl|monDom2|scaffold_51 (2942087-2942227) | |
926-1124, gnl|oryCun1|scaffold_198463 (53890-54020) | |
926-1124, gnl|panTro1|chr11 (113098438-113098572) | |
926-1124, gnl|rheMac2|chr15 (10445567-10445433) | |
926-1124, gnl|rn3|chr3 (8862797-8862930) | |
926-1124, gnl|tetNig1|chr3 (11173406-11173537) | |
926-1124, gnl|xenTro1|scaffold_4287 (14650-14515) | |
1255-1375, gnl|bosTau2|chr7 (4843256-4843376) | |
1255-1375, gnl|canFam2|chr20 (48273826-48273744) | |
1255-1375, gnl|danRer3|chr1 (55680827-55680896) | |
1255-1375, gnl|dasNov1|scaffold_273743 (623-541) | |
1255-1375, gnl|echTel1|scaffold_303268 (265-183) | |
1255-1375, gnl|fr1|chrUn (38763508-38763590) | |
1255-1375, gnl|galGal2|chr17 (5803259-5803341) | |
1255-1375, gnl|hg17|chr19 (17532154-17532236) | |
1255-1375, gnl|Hg17|chr19 (17532274-17532154) | |
1255-1375, gnl|loxAfr1|scaffold_18018 (12502-12420) | |
1255-1375, gnl|mm7|chr8 (70080068-70080150) | |
1255-1375, gnl|Mm7|chr8 (70080188-70080068) | |
1255-1375, gnl|monDom2|scaffold_51 (2941380-2941462) | |
1255-1375, gnl|oryCun1|scaffold_198463 (52960-53042) | |
1255-1375, gnl|panTro1|chr20 (18522947-18523029) | |
1255-1375, gnl|rheMac2|chr15 (10446818-10446736) | |
1255-1375, gnl|rn3|chr16 (18812772-18812854) | |
1255-1375, gnl|tetNig1|chr3 (11173019-11173088) | |
1255-1375, gnl|xenTro1|scaffold_4287 (15541-15459) | |
1445-1776, gnl|bosTau2|chr7 (4845566-4845898) | |
1445-1776, gnl|Hg17|chr19 (17527837-17527493) | |
1445-1776, gnl|Mm7|chr8 (70078640-70078331) |
Expressed library(ies): 7 entry(ies) | More info |
Expressed library(ies): 7 entry(ies) | Help | Less info |
cov (0.528611) | |
eep (0.245128) | |
clu (0.239292) | |
nep (0.183925) | |
cly (0.120642) | |
jca (0.11396) | |
eje (0.0988338) |
Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cov (0.528611) | |
eep (0.245128) | |
clu (0.239292) | |
nep (0.183925) | |
cly (0.120642) | |
jca (0.11396) | |
eje (0.0988338) |