Ss1.1-Thy1-THY010054D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGACTTCTGACAGAAATAAAAGTAACAGCCTTACATAAACCGCTTACTGAGCTGTCAAG TGTTTGAGTAAATTATTCATTAATTATGAATGATTTCAGTTGCAGGGCCAGAGGACTGCT GGTGATAAAAATCTGTCGCGACAACTGTGGACGGCTCTGAGATCCCAGGTGCTGCGTGAC TGCTTATCCTGAATTCTTGCTGTCAAGATGGGAAAACAGAACAGCAAGCTGCGCCCAGAG GTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTAT AAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATT TACGGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCACGTCTTCCGCACC TTCGATGCCAATGGAGATGGAACAATAGACTTTAGAGAATTTATCATAGCCCTGAGTGTA ACATCGAGGGGGAAGCTAGAGCAGAAGCTGAAATGGGCCTTCAGCATGTATGACCTGGAT GGAAACGGCTACATCAGCAAGGCAGAGATGCTCGAGATTGTGCAGGCAATCTATAAGATG GTTTCCTCTGTGATGAAAATGCCTGAAGATGAGTCAACCCCAGAGAAGAGAACGGAAAAA ATCTTCCGCCAGATGGACACCAACAGAGATGGAAAACTCTCCCTGGAAGAGTTCATCCGA GGGGCCAAGAGCGACCCGTCCATAGTGCGCCTGCTGCAGTGCGACCCCAGCAGCGCCGGC CAGTTCTGAGCCCGGCAGCCCGCGAATGGTAGAGCTGCTTGTGTTCTCTTTGGATTTTTC TTTTTAACAAATTTTTTTTTTGTTTTGCCAAACGATATTGACGGTGATGCTGTTCCCCAT GTGGTCGGACGCACCTCCCTCCGTGCCGCCTTCAGCTTCTTTTGTCGTGGACGCTTCGTG GGAATGTCTAGAGCCCCCCCCGCGCTTGTGGAGAGCATGGACAGTGCTGTCGTGCACAGA CTTTGTGGTGTTCATTGTTCTGACGACTTTTCATCGTTATTATTATTTTTTTTCCTTTGA TTGGAAGGTCTGTGTTCGAAAACTGAAAACTTGGGGAGGCAAGAGAAGGGAAACCAATCC AGTCCAGCGATTTTATTGCAAGCTTGAGCAGCTTGTTTGAAAAACGAAACTCCCCACCTG GGTCACACATGCCCTAAGGTTGATGGCACCAGAAGCTGGATTCCCCAAGGACCAGGAATC CTCTGGGGCCAGGCTGTTAAAGGGACCTGGGGGATCCCCCCAGAGGCCCACCCTACCCTC TTCCCCAGCAGGCTGTAGTTACTAAGCTGTGAACATTTCAAGGTAAATTAATAGAGGAGA GGATAAAGATGGCTAAAGGATGGCTCAGCTGTTTCTTCCCGGGTTTACATGAGTTGAGCT AAGATGAATTTCTTTGGAAACTTAATGCAAATGCTAACTTGTATTCCAAAACCAGACCCA TCTTGTTGCCTATTGTGATTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGACTTCTGACAGAAATAAAAGTAACAGCCTTACATAAACCGCTTACTGAGCTGTCAAG TGTTTGAGTAAATTATTCATTAATTATGAATGATTTCAGTTGCAGGGCCAGAGGACTGCT GGTGATAAAAATCTGTCGCGACAACTGTGGACGGCTCTGAGATCCCAGGTGCTGCGTGAC TGCTTATCCTGAATTCTTGCTGTCAAGATGGGAAAACAGAACAGCAAGCTGCGCCCAGAG GTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGAGCACGAGATCCAGGAATGGTAT AAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATT TACGGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCACGTCTTCCGCACC TTCGATGCCAATGGAGATGGAACAATAGACTTTAGAGAATTTATCATAGCCCTGAGTGTA ACATCGAGGGGGAAGCTAGAGCAGAAGCTGAAATGGGCCTTCAGCATGTATGACCTGGAT GGAAACGGCTACATCAGCAAGGCAGAGATGCTCGAGATTGTGCAGGCAATCTATAAGATG GTTTCCTCTGTGATGAAAATGCCTGAAGATGAGTCAACCCCAGAGAAGAGAACGGAAAAA ATCTTCCGCCAGATGGACACCAACAGAGATGGAAAACTCTCCCTGGAAGAGTTCATCCGA GGGGCCAAGAGCGACCCGTCCATAGTGCGCCTGCTGCAGTGCGACCCCAGCAGCGCCGGC CAGTTCTGAGCCCGGCAGCCCGCGAATGGTAGAGCTGCTTGTGTTCTCTTTGGATTTTTC TTTTTAACAAATTTTTTTTTTGTTTTGCCAAACGATATTGACGGTGATGCTGTTCCCCAT GTGGTCGGACGCACCTCCCTCCGTGCCGCCTTCAGCTTCTTTTGTCGTGGACGCTTCGTG GGAATGTCTAGAGCCCCCCCCGCGCTTGTGGAGAGCATGGACAGTGCTGTCGTGCACAGA CTTTGTGGTGTTCATTGTTCTGACGACTTTTCATCGTTATTATTATTTTTTTTCCTTTGA TTGGAAGGTCTGTGTTCGAAAACTGAAAACTTGGGGAGGCAAGAGAAGGGAAACCAATCC AGTCCAGCGATTTTATTGCAAGCTTGAGCAGCTTGTTTGAAAAACGAAACTCCCCACCTG GGTCACACATGCCCTAAGGTTGATGGCACCAGAAGCTGGATTCCCCAAGGACCAGGAATC CTCTGGGGCCAGGCTGTTAAAGGGACCTGGGGGATCCCCCCAGAGGCCCACCCTACCCTC TTCCCCAGCAGGCTGTAGTTACTAAGCTGTGAACATTTCAAGGTAAATTAATAGAGGAGA GGATAAAGATGGCTAAAGGATGGCTCAGCTGTTTCTTCCCGGGTTTACATGAGTTGAGCT AAGATGAATTTCTTTGGAAACTTAATGCAAATGCTAACTTGTATTCCAAAACCAGACCCA TCTTGTTGCCTATTGTGATTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1226-1342, - strand, RNAz p=0.636538 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1226-1342, - strand, RNAz p=0.636538 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 4-195, gnl|bosTau2|chr14 (14511516-14511705) | |
| 4-195, gnl|canFam2|chr13 (6529717-6530189) | |
| 4-195, gnl|dasNov1|scaffold_5540 (51515-51986) | |
| 4-195, gnl|echTel1|scaffold_162667 (746-242) | |
| 4-195, gnl|hg17|chr8 (102968282-102968718) | |
| 4-195, gnl|Hg17|chr8 (102968725-102968538) | |
| 4-195, gnl|mm7|chr15 (37673783-37674235) | |
| 4-195, gnl|Mm7|chr15 (37674242-37674071) | |
| 4-195, gnl|monDom2|scaffold_3 (61453773-61453271) | |
| 4-195, gnl|oryCun1|scaffold_208453 (127357-126890) | |
| 4-195, gnl|panTro1|chr7 (105319624-105320061) | |
| 4-195, gnl|rheMac2|chr8 (104396439-104396876) | |
| 4-195, gnl|rn3|chr7 (73074891-73075313) | |
| 208-586, gnl|bosTau2|chr11 (66633662-66634040) | |
| 208-586, gnl|canFam2|chr17 (10325810-10326095) | |
| 208-586, gnl|danRer3|chr20 (34015670-34015955) | |
| 208-586, gnl|dasNov1|scaffold_41367 (1006-1291) | |
| 208-586, gnl|echTel1|scaffold_293348 (53086-52800) | |
| 208-586, gnl|fr1|chrUn (20927361-20927076) | |
| 208-586, gnl|galGal2|chr3 (95026095-95026380) | |
| 208-586, gnl|hg17|chr2 (10510577-10510862) | |
| 208-586, gnl|Hg17|chr2 (10510482-10510860) | |
| 208-586, gnl|loxAfr1|scaffold_18037 (68768-68483) | |
| 208-586, gnl|mm7|chr12 (19177870-19177588) | |
| 208-586, gnl|Mm7|chr12 (17836490-17836868) | |
| 208-586, gnl|monDom2|scaffold_1 (129082407-129082692) | |
| 208-586, gnl|oryCun1|scaffold_177563 (6691-6976) | |
| 208-586, gnl|panTro1|chr12 (11246293-11246578) | |
| 208-586, gnl|rheMac2|chr13 (10509592-10509877) | |
| 208-586, gnl|rn3|chr6 (41572924-41573209) | |
| 208-586, gnl|tetNig1|chr21 (1641443-1641728) | |
| 208-586, gnl|xenTro1|scaffold_636 (306571-306286) | |
| 691-1524, gnl|bosTau2|chr14 (41240682-41241486) | |
| 691-1524, gnl|Hg17|chr8 (102770811-102769995) | |
| 691-1524, gnl|Mm7|chr15 (37479613-37478787) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-195, gnl|bosTau2|chr14 (14511516-14511705) | |
| 4-195, gnl|canFam2|chr13 (6529717-6530189) | |
| 4-195, gnl|dasNov1|scaffold_5540 (51515-51986) | |
| 4-195, gnl|echTel1|scaffold_162667 (746-242) | |
| 4-195, gnl|hg17|chr8 (102968282-102968718) | |
| 4-195, gnl|Hg17|chr8 (102968725-102968538) | |
| 4-195, gnl|mm7|chr15 (37673783-37674235) | |
| 4-195, gnl|Mm7|chr15 (37674242-37674071) | |
| 4-195, gnl|monDom2|scaffold_3 (61453773-61453271) | |
| 4-195, gnl|oryCun1|scaffold_208453 (127357-126890) | |
| 4-195, gnl|panTro1|chr7 (105319624-105320061) | |
| 4-195, gnl|rheMac2|chr8 (104396439-104396876) | |
| 4-195, gnl|rn3|chr7 (73074891-73075313) | |
| 208-586, gnl|bosTau2|chr11 (66633662-66634040) | |
| 208-586, gnl|canFam2|chr17 (10325810-10326095) | |
| 208-586, gnl|danRer3|chr20 (34015670-34015955) | |
| 208-586, gnl|dasNov1|scaffold_41367 (1006-1291) | |
| 208-586, gnl|echTel1|scaffold_293348 (53086-52800) | |
| 208-586, gnl|fr1|chrUn (20927361-20927076) | |
| 208-586, gnl|galGal2|chr3 (95026095-95026380) | |
| 208-586, gnl|hg17|chr2 (10510577-10510862) | |
| 208-586, gnl|Hg17|chr2 (10510482-10510860) | |
| 208-586, gnl|loxAfr1|scaffold_18037 (68768-68483) | |
| 208-586, gnl|mm7|chr12 (19177870-19177588) | |
| 208-586, gnl|Mm7|chr12 (17836490-17836868) | |
| 208-586, gnl|monDom2|scaffold_1 (129082407-129082692) | |
| 208-586, gnl|oryCun1|scaffold_177563 (6691-6976) | |
| 208-586, gnl|panTro1|chr12 (11246293-11246578) | |
| 208-586, gnl|rheMac2|chr13 (10509592-10509877) | |
| 208-586, gnl|rn3|chr6 (41572924-41573209) | |
| 208-586, gnl|tetNig1|chr21 (1641443-1641728) | |
| 208-586, gnl|xenTro1|scaffold_636 (306571-306286) | |
| 691-1524, gnl|bosTau2|chr14 (41240682-41241486) | |
| 691-1524, gnl|Hg17|chr8 (102770811-102769995) | |
| 691-1524, gnl|Mm7|chr15 (37479613-37478787) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| pro (0.512033) | |
| elu (0.385356) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eli (0.151814) | |
| spl (0.143184) | |
| cov (0.132153) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| elu (0.385356) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eli (0.151814) | |
| spl (0.143184) | |
| cov (0.132153) | |
| eru (0.120048) | |
| pgl (0.118483) |