Non-Coding RNA Search

Ss1.1-Thy1-THY010054D07.5

Sequence:


               
               TTTTTTTTTTTACCATACAGCTTGCATATTTATTGAACAAATACTACTAAAATAGCTAAA
ATACATTGGGTACTTGTCGTGAGTGCATCGGTAAAGATCACATTGTTACAAAAGCCTGCA
TATTCAGCAGTACACAACTGCAACTCTACGTAAATGCCACAGATGCAGAATACTGTTTTC
TTGCTCTATTTACACAGCGGATATACCTATTCTAACAAAGGAGGGGCGGGGGATGCACAA
GAAACTCAGGCCAATGGGGGAGCAAGAAGAGAACGAAGAAGTGCAGCGCATGCGTCGTCG
ATGTGTTAAGTCAGAAGCGGAACAGTTCAGAACGAAGCCTGCCCTGTCAAAGGAAGAGCT
AAAAGACAGTTATATAAAAATTAAGGTGGGCTTTCAGACTGGCTAACACAACAACATTCC
ATGAGTAGATGGTATTGTCTGATTGTATTTTTGTTTATCCATTTCATTGGGAGCAAGGAC
AAAAATGTAAAATCTACACCTTGCTTATCAGAACTACCAAAAAAGAGTGCTCTGCCTTTT
TTTTTTTTTTGAATTTTGTCAAGACATTTTTTTCAACCTTATTTTTGGGAAAGGTGTAAT
TTTCATGTTCCTACGGAGACGTCAGTTTTTGGATTTTTTTTTTTCCAGAGGGCATTTATT
AAAAACAAAAACAAAAAAACCCAAACCAGTTTGCCCTTTTTTTCCCCAAATATTCTTTTA
AACGAAAAGAACCAAAAGAGACACCTAAAAACGCCTGTCAAATTATTGCTTTTCATTCTC
TAAGTTAGGCAGGCGAGGCGACCGAAAGGAAGAGATCTGGTAAGGAAATTACAGTTTTGT
GATTGCTCCCGCTACAGGGACTGCGTGTCTGGGAGAGCCGGCCCCTGAGACGAGTGTCTG
CTCTCAGAGGTGGCACTTACTCAACCTCCAACGCTGAAGAAGAAAGCCACACTGAAGACA
CAAGGAAAACAAGTCAATCCAGTCTAGAGAACAACATTCAGGGAAACAGAGTACCAACAC
CTTCTTAGAACATGAAAATAAAAAATAACTCCATCAGAGCTACCTCGCCAAGGAGCATGT
TGAAAGTCCAAAATAGCACCATTCATCAGTGTCTCAGGTCCTGTGGCAGCATCTCGGTCA
CTTACCACAAGGAAACAATGAGTTTCAAACTACTTCTATACATCAAAAGAGTACATGGAT
AAAATATAGAGATATACAGACAATTGATGAACATAAACTACTAGGCTTGTTACATCTAAA
TGAAAAAAAAAAAAAATGGGGACTCTCAGCCTCTGCAAGGAGCAGTCGGGAGCTGTGTGA
GTGAAAAGGCAGAAGTGGACCGGTTGTGTGAGAGCAGTTGGGGGTTTGAGTTGTGGAAGA
CATCGTCGTAGCGAACCAGGCCTGAAGGCCCACCTGTAAGGGTTGTAAACGTGGATTCAC
AGTGTGAAATTCTGAGCGTTTTCACTTGAGTCAGAATGATTAAAAACTGGTTTGATGATA
CCTATTTGTCCACTGTAAATTCTCTAAAGCAAGGCTCAGAGTCCCATAGTTTCTTCTTAT
ACTTGATGATTTACACAGAAAAAAATCCCATATATGATACCATGACCTCATCAATACCCA
TACACCATATGTAATACAAATGGAGGTGATTAAAAAGAGCGGAGGTAACTGATTCCTGGG
GAGTGGAGTTCATTTTCATTGCTGCCGAGTGGAGTCAGGGAGGCAGCCTCGGTCTCGCCA
TCCTTCTTGCGGTTCACTTCCTTTGGGATGGGAAGTCTTCCCTTAGGAAGCCTTCCCTCC
ATTTCCTTGTTTGGAAATGGTTCTTGACTGACCCAGACAGAAAGCTCTGGGTAATAAACC
ATTTTGAGAATCCTTAACAGTCTTGGCCTTGTACCCTCCCTCTCTTCAGTCCAGGGAGAC
CAAGCAACAGACAAAAGCCCCGCTCCCTGTTCACTCTCTCCTCTCTACACCTGAAACACA
AATGTGGATGAAAAAGGGTATCATGCTAGAAAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTACCATACAGCTTGCATATTTATTGAACAAATACTACTAAAATAGCTAAA
ATACATTGGGTACTTGTCGTGAGTGCATCGGTAAAGATCACATTGTTACAAAAGCCTGCA
TATTCAGCAGTACACAACTGCAACTCTACGTAAATGCCACAGATGCAGAATACTGTTTTC
TTGCTCTATTTACACAGCGGATATACCTATTCTAACAAAGGAGGGGCGGGGGATGCACAA
GAAACTCAGGCCAATGGGGGAGCAAGAAGAGAACGAAGAAGTGCAGCGCATGCGTCGTCG
ATGTGTTAAGTCAGAAGCGGAACAGTTCAGAACGAAGCCTGCCCTGTCAAAGGAAGAGCT
AAAAGACAGTTATATAAAAATTAAGGTGGGCTTTCAGACTGGCTAACACAACAACATTCC
ATGAGTAGATGGTATTGTCTGATTGTATTTTTGTTTATCCATTTCATTGGGAGCAAGGAC
AAAAATGTAAAATCTACACCTTGCTTATCAGAACTACCAAAAAAGAGTGCTCTGCCTTTT
TTTTTTTTTTGAATTTTGTCAAGACATTTTTTTCAACCTTATTTTTGGGAAAGGTGTAAT
TTTCATGTTCCTACGGAGACGTCAGTTTTTGGATTTTTTTTTTTCCAGAGGGCATTTATT
AAAAACAAAAACAAAAAAACCCAAACCAGTTTGCCCTTTTTTTCCCCAAATATTCTTTTA
AACGAAAAGAACCAAAAGAGACACCTAAAAACGCCTGTCAAATTATTGCTTTTCATTCTC
TAAGTTAGGCAGGCGAGGCGACCGAAAGGAAGAGATCTGGTAAGGAAATTACAGTTTTGT
GATTGCTCCCGCTACAGGGACTGCGTGTCTGGGAGAGCCGGCCCCTGAGACGAGTGTCTG
CTCTCAGAGGTGGCACTTACTCAACCTCCAACGCTGAAGAAGAAAGCCACACTGAAGACA
CAAGGAAAACAAGTCAATCCAGTCTAGAGAACAACATTCAGGGAAACAGAGTACCAACAC
CTTCTTAGAACATGAAAATAAAAAATAACTCCATCAGAGCTACCTCGCCAAGGAGCATGT
TGAAAGTCCAAAATAGCACCATTCATCAGTGTCTCAGGTCCTGTGGCAGCATCTCGGTCA
CTTACCACAAGGAAACAATGAGTTTCAAACTACTTCTATACATCAAAAGAGTACATGGAT
AAAATATAGAGATATACAGACAATTGATGAACATAAACTACTAGGCTTGTTACATCTAAA
TGAAAAAAAAAAAAAATGGGGACTCTCAGCCTCTGCAAGGAGCAGTCGGGAGCTGTGTGA
GTGAAAAGGCAGAAGTGGACCGGTTGTGTGAGAGCAGTTGGGGGTTTGAGTTGTGGAAGA
CATCGTCGTAGCGAACCAGGCCTGAAGGCCCACCTGTAAGGGTTGTAAACGTGGATTCAC
AGTGTGAAATTCTGAGCGTTTTCACTTGAGTCAGAATGATTAAAAACTGGTTTGATGATA
CCTATTTGTCCACTGTAAATTCTCTAAAGCAAGGCTCAGAGTCCCATAGTTTCTTCTTAT
ACTTGATGATTTACACAGAAAAAAATCCCATATATGATACCATGACCTCATCAATACCCA
TACACCATATGTAATACAAATGGAGGTGATTAAAAAGAGCGGAGGTAACTGATTCCTGGG
GAGTGGAGTTCATTTTCATTGCTGCCGAGTGGAGTCAGGGAGGCAGCCTCGGTCTCGCCA
TCCTTCTTGCGGTTCACTTCCTTTGGGATGGGAAGTCTTCCCTTAGGAAGCCTTCCCTCC
ATTTCCTTGTTTGGAAATGGTTCTTGACTGACCCAGACAGAAAGCTCTGGGTAATAAACC
ATTTTGAGAATCCTTAACAGTCTTGGCCTTGTACCCTCCCTCTCTTCAGTCCAGGGAGAC
CAAGCAACAGACAAAAGCCCCGCTCCCTGTTCACTCTCTCCTCTCTACACCTGAAACACA
AATGTGGATGAAAAAGGGTATCATGCTAGAAAGACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56403890|emb|CAI29730.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56403890|emb|CAI29730.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1413-1788, gnl|bosTau2|chr2 (984347-983974)
               

               
               1413-1788, gnl|Hg17|chr5 (111094275-111094649)
               

               
               1413-1788, gnl|Mm7|chr18 (33813941-33814326)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1413-1788, gnl|bosTau2|chr2 (984347-983974)
               

               
               1413-1788, gnl|Hg17|chr5 (111094275-111094649)
               

               
               1413-1788, gnl|Mm7|chr18 (33813941-33814326)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               fce (2.44432)
               

               
               cbe (2.15311)
               

               
               elu (1.92678)
               

               
               ebs (1.89282)
               

               
               eru (1.68067)
               

               
               eep (1.47077)
               

               
               ecc (1.38042)
               

               
               eye (1.02302)
               

               
               ldo (0.970026)
               

               
               nlu (0.958405)
               

               
               ece (0.917221)
               

               
               fcc (0.593354)
               

               
               med (0.58126)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               che (0.545256)
               

               
               ese (0.506009)
               

               
               nco (0.485201)
               

               
               jca (0.45584)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               fbs (0.350693)
               

               
               cut (0.339847)
               

               
               eje (0.296501)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (2.44432)
               

               
               cbe (2.15311)
               

               
               elu (1.92678)
               

               
               ebs (1.89282)
               

               
               eru (1.68067)
               

               
               eep (1.47077)
               

               
               ecc (1.38042)
               

               
               eye (1.02302)
               

               
               ldo (0.970026)
               

               
               nlu (0.958405)
               

               
               ece (0.917221)
               

               
               fcc (0.593354)
               

               
               med (0.58126)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               che (0.545256)
               

               
               ese (0.506009)
               

               
               nco (0.485201)
               

               
               jca (0.45584)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               fbs (0.350693)
               

               
               cut (0.339847)
               

               
               eje (0.296501)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1413-1788, gnl\|bosTau2\|chr2 (984347-983974)
	1413-1788, gnl\|Hg17\|chr5 (111094275-111094649)
	1413-1788, gnl\|Mm7\|chr18 (33813941-33814326)

	fce (2.44432)
	cbe (2.15311)
	elu (1.92678)
	ebs (1.89282)
	eru (1.68067)
	eep (1.47077)
	ecc (1.38042)
	eye (1.02302)
	ldo (0.970026)
	nlu (0.958405)
	ece (0.917221)
	fcc (0.593354)
	med (0.58126)
	nep (0.551775)
	nca (0.547495)
	che (0.545256)
	ese (0.506009)
	nco (0.485201)
	jca (0.45584)
	mas (0.42061)
	hea (0.408998)
	fbs (0.350693)
	cut (0.339847)
	eje (0.296501)
	ski (0.29347)
	spl (0.286369)
	hlv (0.278513)
	nms (0.213858)
	cmu (0.186393)
	fty (0.17584)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	cbr (0.127975)
	thg (0.126791)
	bla (0.124347)
	cly (0.120642)
	clu (0.119646)
	cty (0.10408)
	nbm (0.0993246)