Ss1.1-Thy1-THY010054F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACAGCGAGTTTGAAATAAAA GTTGTTAGAGTGGTACTGAGGAGAAAAAAGAATCCGAGACCATGTACTGCGCATACACAA TCCCGGGCATGGGCGGCAACTCTTTGATGTACTACTATAATGGGAAAGCGGTTTATGCTC CATCAGCAAGCACTGCCGACTACAATAGGGACTCGCCCGGCTACCCTTCCTCAAAACCAG CAGCCAGCACTTTCCCTAGCTCCTTCTTCATGCAAGATGGCCATCACAGCAGTGACCCTT GGAGCTCCTCCAGTGGGATGAATCAGCCTGGCTACGGAGGAATGTTGGGCAATTCTTCTC ATATTCCACAGTCTAGCAGCTACTGCAGCCTGCATCCCCACGAACGTTTGAGCTATCCAT CACACTCCTCAGCAGACATAAATTCCAGTCTTCCTCCGATGTCCACGTTCCACCGTAGTG GTACCAACCATTACAGCACCTCTTCCTGTACACCTCCTGCCAACGGGACAGACAGCATCA TGGCAAATAGAGGAAGCGGGGCAGCAGGCAGCTCCCAGACTGGAGACGCTCTGGGGAAAG CACTTGCTTCGATCTATTCTCCAGATCACACTAACAACAGCTTTTCATCAAACCCTTCAA CTCCTGTTGGCTCCCCTCCTTCTCTCTCAGCAGGCACAGCCGTTTGGTCTAGAAATGGAG GACAGGCCTCATCATCTCCTAATTATGAAGGACCCTTACACTCTTTGCAAAGCCGAATCG AAGATCGTTTAGAAAGACTGGACGATGCTATTCACGTTCTCCGAAATCATGCAGTGGGCC CATCTACCGCCATGCCTGGTGGTCACGGGGACATGCACGGGATCATTGGACCTTCTCATA ATGGAGCAATGGGTGGTCTGGCCTCAGGGTATGGAACCGGTCTTCTTTCCGCCAACAGAC ATTCACTCATGGTTGGGGCCCATCGTGAAGACGGCGTGGCCCTGAGGGGCAGCCATTCTC TTGTCCCAAACCAGGTTCCAGTACCACAGCTTCCTGTCCAGTCTGCAACTTCCCCTGATT TGAACCCACCCCAGGACCCTTACAGAGGCATGCCGCCAGGATTGCAGGGCCAGAGTGTCT CCTCCGGCAGCTCTGAGATCAAGTCCGACGACGAGGGTGACGAAAACCTGCAAGACACGA AATCTTCCGAGGACAAGAAATTAGATGACGACAAGAAGGATATCAAATCCATTACTAGGT CAAGATCTAGCAATAATGATGATGAGGACCTGACACCGGAGCAGAAGGCAGAGCGGGAGA AGGAGCGGAGGATGGCCAACAACGCCCGAGAGCGCCTGCGTGTCCGAGACATCAATGAGG CATTCAAGGAGCTGGGCCGCATGGTGCAGCTCCACCTCAAGAGTGATAAGCCCCAGACCA AGCTCCTGATCCTCCACCAGGCCGTGGCCGTCATCCTCAGCCTGGAGCAGCAAGTCCGAG AAAGGAATCTAAATCCGAAAGCTGCGTGTCTGAAAAGAAGGGAAGAGGAAAAGGTGTCCT CGGAGCCGCCCCCACTCTCCCTGGCGGGCCCGCACCCTGGCATGGGAGATGCATCCAATC ACATGGGACAGATGTAAAAGGGTCCAAGTTGCCACATTGCTTCATTAATACAAGAGACCA CTTCCTTAACAGCTGTATTATCTTAAACCCACATAAACACTTCTCCTTAACCCCCTTTTT TGTAATATAAGACAAGTCTGAGTAGTTATGAATCGCAGACGCAAGAGGTTTCAGCATTCC CAATTATCAAAAAACCGAAAAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACAGCGAGTTTGAAATAAAA GTTGTTAGAGTGGTACTGAGGAGAAAAAAGAATCCGAGACCATGTACTGCGCATACACAA TCCCGGGCATGGGCGGCAACTCTTTGATGTACTACTATAATGGGAAAGCGGTTTATGCTC CATCAGCAAGCACTGCCGACTACAATAGGGACTCGCCCGGCTACCCTTCCTCAAAACCAG CAGCCAGCACTTTCCCTAGCTCCTTCTTCATGCAAGATGGCCATCACAGCAGTGACCCTT GGAGCTCCTCCAGTGGGATGAATCAGCCTGGCTACGGAGGAATGTTGGGCAATTCTTCTC ATATTCCACAGTCTAGCAGCTACTGCAGCCTGCATCCCCACGAACGTTTGAGCTATCCAT CACACTCCTCAGCAGACATAAATTCCAGTCTTCCTCCGATGTCCACGTTCCACCGTAGTG GTACCAACCATTACAGCACCTCTTCCTGTACACCTCCTGCCAACGGGACAGACAGCATCA TGGCAAATAGAGGAAGCGGGGCAGCAGGCAGCTCCCAGACTGGAGACGCTCTGGGGAAAG CACTTGCTTCGATCTATTCTCCAGATCACACTAACAACAGCTTTTCATCAAACCCTTCAA CTCCTGTTGGCTCCCCTCCTTCTCTCTCAGCAGGCACAGCCGTTTGGTCTAGAAATGGAG GACAGGCCTCATCATCTCCTAATTATGAAGGACCCTTACACTCTTTGCAAAGCCGAATCG AAGATCGTTTAGAAAGACTGGACGATGCTATTCACGTTCTCCGAAATCATGCAGTGGGCC CATCTACCGCCATGCCTGGTGGTCACGGGGACATGCACGGGATCATTGGACCTTCTCATA ATGGAGCAATGGGTGGTCTGGCCTCAGGGTATGGAACCGGTCTTCTTTCCGCCAACAGAC ATTCACTCATGGTTGGGGCCCATCGTGAAGACGGCGTGGCCCTGAGGGGCAGCCATTCTC TTGTCCCAAACCAGGTTCCAGTACCACAGCTTCCTGTCCAGTCTGCAACTTCCCCTGATT TGAACCCACCCCAGGACCCTTACAGAGGCATGCCGCCAGGATTGCAGGGCCAGAGTGTCT CCTCCGGCAGCTCTGAGATCAAGTCCGACGACGAGGGTGACGAAAACCTGCAAGACACGA AATCTTCCGAGGACAAGAAATTAGATGACGACAAGAAGGATATCAAATCCATTACTAGGT CAAGATCTAGCAATAATGATGATGAGGACCTGACACCGGAGCAGAAGGCAGAGCGGGAGA AGGAGCGGAGGATGGCCAACAACGCCCGAGAGCGCCTGCGTGTCCGAGACATCAATGAGG CATTCAAGGAGCTGGGCCGCATGGTGCAGCTCCACCTCAAGAGTGATAAGCCCCAGACCA AGCTCCTGATCCTCCACCAGGCCGTGGCCGTCATCCTCAGCCTGGAGCAGCAAGTCCGAG AAAGGAATCTAAATCCGAAAGCTGCGTGTCTGAAAAGAAGGGAAGAGGAAAAGGTGTCCT CGGAGCCGCCCCCACTCTCCCTGGCGGGCCCGCACCCTGGCATGGGAGATGCATCCAATC ACATGGGACAGATGTAAAAGGGTCCAAGTTGCCACATTGCTTCATTAATACAAGAGACCA CTTCCTTAACAGCTGTATTATCTTAAACCCACATAAACACTTCTCCTTAACCCCCTTTTT TGTAATATAAGACAAGTCTGAGTAGTTATGAATCGCAGACGCAAGAGGTTTCAGCATTCC CAATTATCAAAAAACCGAAAAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 284-388, - strand, RNAz p=0.624722 | |
| 412-543, - strand, RNAz p=0.901104 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 284-388, - strand, RNAz p=0.624722 | |
| 412-543, - strand, RNAz p=0.901104 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-172, gnl|bosTau2|chr24 (34934597-34934768) | |
| 1-172, gnl|Hg17|chr18 (51140068-51139897) | |
| 1-172, gnl|Mm7|chr18 (69985613-69985784) | |
| 275-410, gnl|bosTau2|chr24 (34983939-34984074) | |
| 275-410, gnl|canFam2|chr1 (23376038-23375872) | |
| 275-410, gnl|danRer3|chrUn (98333904-98334045) | |
| 275-410, gnl|dasNov1|scaffold_203 (88754-88920) | |
| 275-410, gnl|echTel1|scaffold_301160 (42495-42661) | |
| 275-410, gnl|fr1|chrUn (213364055-213364235) | |
| 275-410, gnl|hg17|chr18 (51093819-51093985) | |
| 275-410, gnl|Hg17|chr18 (51093983-51093848) | |
| 275-410, gnl|loxAfr1|scaffold_8870 (27478-27644) | |
| 275-410, gnl|mm7|chr18 (70029191-70029027) | |
| 275-410, gnl|Mm7|chr18 (70029027-70029162) | |
| 275-410, gnl|monDom2|scaffold_20 (47989148-47988982) | |
| 275-410, gnl|oryCun1|scaffold_202185 (102132-101967) | |
| 275-410, gnl|panTro1|chr17 (47722909-47723075) | |
| 275-410, gnl|rheMac2|chr18 (48549365-48549531) | |
| 275-410, gnl|rn3|chr18 (66385879-66385718) | |
| 275-410, gnl|tetNig1|chrUn_random (19731304-19731465) | |
| 275-410, gnl|xenTro1|scaffold_431 (1025602-1025461) | |
| 412-543, gnl|bosTau2|chr24 (34993463-34993594) | |
| 412-543, gnl|canFam2|chr1 (23381947-23381797) | |
| 412-543, gnl|danRer3|chrUn (98330851-98330999) | |
| 412-543, gnl|dasNov1|scaffold_203 (82923-83074) | |
| 412-543, gnl|echTel1|scaffold_301160 (37174-37325) | |
| 412-543, gnl|fr1|chrUn (213363367-213363531) | |
| 412-543, gnl|hg17|chr18 (51088053-51088204) | |
| 412-543, gnl|Hg17|chr18 (51088191-51088060) | |
| 412-543, gnl|loxAfr1|scaffold_8870 (14303-14454) | |
| 412-543, gnl|mm7|chr18 (70035222-70035071) | |
| 412-543, gnl|Mm7|chr18 (70035082-70035213) | |
| 412-543, gnl|monDom2|scaffold_20 (47997953-47997802) | |
| 412-543, gnl|oryCun1|scaffold_202185 (110630-110479) | |
| 412-543, gnl|panTro1|chr17 (47717129-47717280) | |
| 412-543, gnl|rheMac2|chr18 (48543307-48543458) | |
| 412-543, gnl|rn3|chr18 (66391752-66391601) | |
| 412-543, gnl|tetNig1|chrUn_random (19730571-19730731) | |
| 412-543, gnl|xenTro1|scaffold_431 (1027116-1026954) | |
| 767-978, gnl|bosTau2|chr24 (35010151-35010362) | |
| 767-978, gnl|canFam2|chr1 (23396857-23396634) | |
| 767-978, gnl|danRer3|chrUn (98319713-98319918) | |
| 767-978, gnl|dasNov1|scaffold_203 (68544-68761) | |
| 767-978, gnl|echTel1|scaffold_301160 (22464-22687) | |
| 767-978, gnl|fr1|chrUn (213357744-213357968) | |
| 767-978, gnl|galGal2|chr10 (8219004-8219226) | |
| 767-978, gnl|hg17|chr18 (51072714-51072937) | |
| 767-978, gnl|Hg17|chr18 (51072930-51072719) | |
| 767-978, gnl|loxAfr1|scaffold_2453 (28784-29001) | |
| 767-978, gnl|mm7|chr18 (70050158-70049939) | |
| 767-978, gnl|Mm7|chr18 (70049944-70050153) | |
| 767-978, gnl|monDom2|scaffold_20 (48016189-48015968) | |
| 767-978, gnl|oryCun1|scaffold_132957 (7151-6932) | |
| 767-978, gnl|panTro1|chr17 (47701787-47702010) | |
| 767-978, gnl|rheMac2|chr18 (48528026-48528249) | |
| 767-978, gnl|rn3|chr18 (66406454-66406236) | |
| 767-978, gnl|tetNig1|chrUn_random (19723998-19724223) | |
| 767-978, gnl|xenTro1|scaffold_431 (1035997-1035770) | |
| 1269-1500, gnl|bosTau2|chr10 (35147833-35147602) | |
| 1269-1500, gnl|Hg17|chr15 (55352521-55352752) | |
| 1269-1500, gnl|Mm7|chr9 (71891385-71891154) | |
| 1641-1824, gnl|bosTau2|chr24 (35038133-35038316) | |
| 1641-1824, gnl|Hg17|chr18 (51046260-51046077) | |
| 1641-1824, gnl|Mm7|chr18 (70075274-70075459) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-172, gnl|bosTau2|chr24 (34934597-34934768) | |
| 1-172, gnl|Hg17|chr18 (51140068-51139897) | |
| 1-172, gnl|Mm7|chr18 (69985613-69985784) | |
| 275-410, gnl|bosTau2|chr24 (34983939-34984074) | |
| 275-410, gnl|canFam2|chr1 (23376038-23375872) | |
| 275-410, gnl|danRer3|chrUn (98333904-98334045) | |
| 275-410, gnl|dasNov1|scaffold_203 (88754-88920) | |
| 275-410, gnl|echTel1|scaffold_301160 (42495-42661) | |
| 275-410, gnl|fr1|chrUn (213364055-213364235) | |
| 275-410, gnl|hg17|chr18 (51093819-51093985) | |
| 275-410, gnl|Hg17|chr18 (51093983-51093848) | |
| 275-410, gnl|loxAfr1|scaffold_8870 (27478-27644) | |
| 275-410, gnl|mm7|chr18 (70029191-70029027) | |
| 275-410, gnl|Mm7|chr18 (70029027-70029162) | |
| 275-410, gnl|monDom2|scaffold_20 (47989148-47988982) | |
| 275-410, gnl|oryCun1|scaffold_202185 (102132-101967) | |
| 275-410, gnl|panTro1|chr17 (47722909-47723075) | |
| 275-410, gnl|rheMac2|chr18 (48549365-48549531) | |
| 275-410, gnl|rn3|chr18 (66385879-66385718) | |
| 275-410, gnl|tetNig1|chrUn_random (19731304-19731465) | |
| 275-410, gnl|xenTro1|scaffold_431 (1025602-1025461) | |
| 412-543, gnl|bosTau2|chr24 (34993463-34993594) | |
| 412-543, gnl|canFam2|chr1 (23381947-23381797) | |
| 412-543, gnl|danRer3|chrUn (98330851-98330999) | |
| 412-543, gnl|dasNov1|scaffold_203 (82923-83074) | |
| 412-543, gnl|echTel1|scaffold_301160 (37174-37325) | |
| 412-543, gnl|fr1|chrUn (213363367-213363531) | |
| 412-543, gnl|hg17|chr18 (51088053-51088204) | |
| 412-543, gnl|Hg17|chr18 (51088191-51088060) | |
| 412-543, gnl|loxAfr1|scaffold_8870 (14303-14454) | |
| 412-543, gnl|mm7|chr18 (70035222-70035071) | |
| 412-543, gnl|Mm7|chr18 (70035082-70035213) | |
| 412-543, gnl|monDom2|scaffold_20 (47997953-47997802) | |
| 412-543, gnl|oryCun1|scaffold_202185 (110630-110479) | |
| 412-543, gnl|panTro1|chr17 (47717129-47717280) | |
| 412-543, gnl|rheMac2|chr18 (48543307-48543458) | |
| 412-543, gnl|rn3|chr18 (66391752-66391601) | |
| 412-543, gnl|tetNig1|chrUn_random (19730571-19730731) | |
| 412-543, gnl|xenTro1|scaffold_431 (1027116-1026954) | |
| 767-978, gnl|bosTau2|chr24 (35010151-35010362) | |
| 767-978, gnl|canFam2|chr1 (23396857-23396634) | |
| 767-978, gnl|danRer3|chrUn (98319713-98319918) | |
| 767-978, gnl|dasNov1|scaffold_203 (68544-68761) | |
| 767-978, gnl|echTel1|scaffold_301160 (22464-22687) | |
| 767-978, gnl|fr1|chrUn (213357744-213357968) | |
| 767-978, gnl|galGal2|chr10 (8219004-8219226) | |
| 767-978, gnl|hg17|chr18 (51072714-51072937) | |
| 767-978, gnl|Hg17|chr18 (51072930-51072719) | |
| 767-978, gnl|loxAfr1|scaffold_2453 (28784-29001) | |
| 767-978, gnl|mm7|chr18 (70050158-70049939) | |
| 767-978, gnl|Mm7|chr18 (70049944-70050153) | |
| 767-978, gnl|monDom2|scaffold_20 (48016189-48015968) | |
| 767-978, gnl|oryCun1|scaffold_132957 (7151-6932) | |
| 767-978, gnl|panTro1|chr17 (47701787-47702010) | |
| 767-978, gnl|rheMac2|chr18 (48528026-48528249) | |
| 767-978, gnl|rn3|chr18 (66406454-66406236) | |
| 767-978, gnl|tetNig1|chrUn_random (19723998-19724223) | |
| 767-978, gnl|xenTro1|scaffold_431 (1035997-1035770) | |
| 1269-1500, gnl|bosTau2|chr10 (35147833-35147602) | |
| 1269-1500, gnl|Hg17|chr15 (55352521-55352752) | |
| 1269-1500, gnl|Mm7|chr9 (71891385-71891154) | |
| 1641-1824, gnl|bosTau2|chr24 (35038133-35038316) | |
| 1641-1824, gnl|Hg17|chr18 (51046260-51046077) | |
| 1641-1824, gnl|Mm7|chr18 (70075274-70075459) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eep (0.245128) | |
| fty (0.17584) | |
| cag (0.151194) | |
| pla (0.133672) | |
| sug (0.127291) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| fty (0.17584) | |
| cag (0.151194) | |
| pla (0.133672) | |
| sug (0.127291) |