Ss1.1-Thy1-THY010055C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGAATAGGATGCACAGACAAAATATAGATGCCTACCATAACCCAGATGCAAGGACATA TGAAGATAAAAGGGCTGTTGTATCTCTAGACCAAAATTTAGCCACTTCAAATGCTGAGAA CCTAGAAGATTCTGCAAATAAAAACTCAGGTCATATGCAAACACAGAGCTCTCCTTTTGC TCGGGGAAATATATTTGGTGAGCCTCCAACTGAACTTCAGATTAAACAGCAGGAATTATA CAAGAATTTTCTTCGTTTTCAGATTGAGGAAAAGAAACAAAGAGAAGAAGCAGAGCGAGA GAGAATGAGAATTGCTGAAGAAAAAGAAGAAAAACGGCTTGCTGAGCAGAGGGCACGGAT TCAGCAAGAGTATGAAGAGGAACAGGAAAAGAAAAGGGAGAAGGAGGAGGAGCAAAGGCT GAAAAACGAAGAGCTTATTCGGTTAGCTGAAGAAAGACGAAAAGAAGCAGAAAGAAAGAA GAAAGAAGAAGAAGAAAAACATAACCTACAACTTCAGCACTATTACGAAAGAGAAAATAT AATTGGGGAAGAAACAAAGCGTTTGAGACAGCCTTCTCCTGTAGTTCCAGCCCTTCAGAA CAAGATTGCAAGCAAACTCCAAAGACCTCCTTCGGTTGATAGCATTTTAACTTCCTTTAT TCAGGAAAGTTCCATGTCCAGGGCACAGTCTCCTCCGGTACCTGCCAGGAAAAATCAGCT TCGTGCAGAAGAGGAGAAAAAAAATGTAATTATGGAGTTGTCAGAAATGAGAAGGCAGCT TCGTAGTGAAGAGCGGCGTCTACAGGGGCGGTTGTTACACATGGACAGTGATGATGAAGT TCATATAAGGAAAAGAGAAAGGAATCCCATGGATGTATTTGACATGGCCCGACATCGGTT ACAGGCTCCTGTCAGAAGACAGTCACCTAAGGGCTTAGACGCTGCTACTTTTCAGAATAT TCATGACTTTAATGAGCTGAAAGATAGAGATTCAGAAACACGAGTCGATCTGAAATTTAT GTACCCAGAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGAATAGGATGCACAGACAAAATATAGATGCCTACCATAACCCAGATGCAAGGACATA TGAAGATAAAAGGGCTGTTGTATCTCTAGACCAAAATTTAGCCACTTCAAATGCTGAGAA CCTAGAAGATTCTGCAAATAAAAACTCAGGTCATATGCAAACACAGAGCTCTCCTTTTGC TCGGGGAAATATATTTGGTGAGCCTCCAACTGAACTTCAGATTAAACAGCAGGAATTATA CAAGAATTTTCTTCGTTTTCAGATTGAGGAAAAGAAACAAAGAGAAGAAGCAGAGCGAGA GAGAATGAGAATTGCTGAAGAAAAAGAAGAAAAACGGCTTGCTGAGCAGAGGGCACGGAT TCAGCAAGAGTATGAAGAGGAACAGGAAAAGAAAAGGGAGAAGGAGGAGGAGCAAAGGCT GAAAAACGAAGAGCTTATTCGGTTAGCTGAAGAAAGACGAAAAGAAGCAGAAAGAAAGAA GAAAGAAGAAGAAGAAAAACATAACCTACAACTTCAGCACTATTACGAAAGAGAAAATAT AATTGGGGAAGAAACAAAGCGTTTGAGACAGCCTTCTCCTGTAGTTCCAGCCCTTCAGAA CAAGATTGCAAGCAAACTCCAAAGACCTCCTTCGGTTGATAGCATTTTAACTTCCTTTAT TCAGGAAAGTTCCATGTCCAGGGCACAGTCTCCTCCGGTACCTGCCAGGAAAAATCAGCT TCGTGCAGAAGAGGAGAAAAAAAATGTAATTATGGAGTTGTCAGAAATGAGAAGGCAGCT TCGTAGTGAAGAGCGGCGTCTACAGGGGCGGTTGTTACACATGGACAGTGATGATGAAGT TCATATAAGGAAAAGAGAAAGGAATCCCATGGATGTATTTGACATGGCCCGACATCGGTT ACAGGCTCCTGTCAGAAGACAGTCACCTAAGGGCTTAGACGCTGCTACTTTTCAGAATAT TCATGACTTTAATGAGCTGAAAGATAGAGATTCAGAAACACGAGTCGATCTGAAATTTAT GTACCCAGAGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr14 (17955617-17955467) | |
| 1-151, gnl|canFam2|chr29 (19680488-19680746) | |
| 1-151, gnl|dasNov1|scaffold_171513 (1255-1010) | |
| 1-151, gnl|echTel1|scaffold_289269 (6859-6614) | |
| 1-151, gnl|galGal2|chr2 (114815244-114815473) | |
| 1-151, gnl|hg17|chr8 (68224507-68224762) | |
| 1-151, gnl|Hg17|chr8 (68224576-68224726) | |
| 1-151, gnl|loxAfr1|scaffold_13154 (32368-32612) | |
| 1-151, gnl|mm7|chr1 (10246697-10246940) | |
| 1-151, gnl|Mm7|chr1 (10246767-10246917) | |
| 1-151, gnl|monDom2|scaffold_4 (94345290-94345039) | |
| 1-151, gnl|panTro1|chr7 (70250328-70250580) | |
| 1-151, gnl|rheMac2|chr8 (69777220-69777469) | |
| 1-151, gnl|rn3|chr5 (8618680-8618438) | |
| 1-151, gnl|xenTro1|scaffold_109 (400409-400653) | |
| 411-559, gnl|bosTau2|chr14 (17945306-17945158) | |
| 411-559, gnl|canFam2|chr29 (19687871-19688105) | |
| 411-559, gnl|hg17|chr8 (68233733-68233967) | |
| 411-559, gnl|Hg17|chr8 (68233778-68233926) | |
| 411-559, gnl|loxAfr1|scaffold_13154 (39333-39605) | |
| 411-559, gnl|mm7|chr1 (10255384-10255604) | |
| 411-559, gnl|Mm7|chr1 (10255425-10255573) | |
| 411-559, gnl|monDom2|scaffold_4 (94337023-94336757) | |
| 411-559, gnl|oryCun1|scaffold_164371 (22405-22178) | |
| 411-559, gnl|panTro1|chr7 (70259566-70259800) | |
| 411-559, gnl|rheMac2|chr8 (69786470-69786700) | |
| 411-559, gnl|rn3|chr5 (8610815-8610597) | |
| 411-559, gnl|xenTro1|scaffold_109 (406436-406661) | |
| 848-989, gnl|bosTau2|chr14 (17933498-17933360) | |
| 848-989, gnl|canFam2|chr29 (19698903-19699130) | |
| 848-989, gnl|dasNov1|scaffold_9916 (3118-3331) | |
| 848-989, gnl|echTel1|scaffold_283468 (2414-2191) | |
| 848-989, gnl|hg17|chr8 (68247141-68247366) | |
| 848-989, gnl|Hg17|chr8 (68247203-68247344) | |
| 848-989, gnl|loxAfr1|scaffold_37484 (12909-12682) | |
| 848-989, gnl|mm7|chr1 (10268911-10269117) | |
| 848-989, gnl|Mm7|chr1 (10268968-10269109) | |
| 848-989, gnl|monDom2|scaffold_4 (94332392-94332152) | |
| 848-989, gnl|oryCun1|scaffold_164371 (13247-13032) | |
| 848-989, gnl|panTro1|chr7 (70272773-70272991) | |
| 848-989, gnl|rheMac2|chr8 (69797884-69798109) | |
| 848-989, gnl|rn3|chr5 (8604614-8604410) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr14 (17955617-17955467) | |
| 1-151, gnl|canFam2|chr29 (19680488-19680746) | |
| 1-151, gnl|dasNov1|scaffold_171513 (1255-1010) | |
| 1-151, gnl|echTel1|scaffold_289269 (6859-6614) | |
| 1-151, gnl|galGal2|chr2 (114815244-114815473) | |
| 1-151, gnl|hg17|chr8 (68224507-68224762) | |
| 1-151, gnl|Hg17|chr8 (68224576-68224726) | |
| 1-151, gnl|loxAfr1|scaffold_13154 (32368-32612) | |
| 1-151, gnl|mm7|chr1 (10246697-10246940) | |
| 1-151, gnl|Mm7|chr1 (10246767-10246917) | |
| 1-151, gnl|monDom2|scaffold_4 (94345290-94345039) | |
| 1-151, gnl|panTro1|chr7 (70250328-70250580) | |
| 1-151, gnl|rheMac2|chr8 (69777220-69777469) | |
| 1-151, gnl|rn3|chr5 (8618680-8618438) | |
| 1-151, gnl|xenTro1|scaffold_109 (400409-400653) | |
| 411-559, gnl|bosTau2|chr14 (17945306-17945158) | |
| 411-559, gnl|canFam2|chr29 (19687871-19688105) | |
| 411-559, gnl|hg17|chr8 (68233733-68233967) | |
| 411-559, gnl|Hg17|chr8 (68233778-68233926) | |
| 411-559, gnl|loxAfr1|scaffold_13154 (39333-39605) | |
| 411-559, gnl|mm7|chr1 (10255384-10255604) | |
| 411-559, gnl|Mm7|chr1 (10255425-10255573) | |
| 411-559, gnl|monDom2|scaffold_4 (94337023-94336757) | |
| 411-559, gnl|oryCun1|scaffold_164371 (22405-22178) | |
| 411-559, gnl|panTro1|chr7 (70259566-70259800) | |
| 411-559, gnl|rheMac2|chr8 (69786470-69786700) | |
| 411-559, gnl|rn3|chr5 (8610815-8610597) | |
| 411-559, gnl|xenTro1|scaffold_109 (406436-406661) | |
| 848-989, gnl|bosTau2|chr14 (17933498-17933360) | |
| 848-989, gnl|canFam2|chr29 (19698903-19699130) | |
| 848-989, gnl|dasNov1|scaffold_9916 (3118-3331) | |
| 848-989, gnl|echTel1|scaffold_283468 (2414-2191) | |
| 848-989, gnl|hg17|chr8 (68247141-68247366) | |
| 848-989, gnl|Hg17|chr8 (68247203-68247344) | |
| 848-989, gnl|loxAfr1|scaffold_37484 (12909-12682) | |
| 848-989, gnl|mm7|chr1 (10268911-10269117) | |
| 848-989, gnl|Mm7|chr1 (10268968-10269109) | |
| 848-989, gnl|monDom2|scaffold_4 (94332392-94332152) | |
| 848-989, gnl|oryCun1|scaffold_164371 (13247-13032) | |
| 848-989, gnl|panTro1|chr7 (70272773-70272991) | |
| 848-989, gnl|rheMac2|chr8 (69797884-69798109) | |
| 848-989, gnl|rn3|chr5 (8604614-8604410) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.126791) | |
| eep (0.122564) |