Non-Coding RNA Search

Ss1.1-Thy1-THY010055D01.5

Sequence:


               
               CGTCGCTCCCCGCCCTCCCGCCGCCGTCGCCGCCCGCTCTTGCTCTCTCGCGCTCCCCGC
CCGTCGCTCTCCGTCGGTTCTCTCGTTAGTCCACCGCCACCTCCACAGCCACCCGCCGTA
GTCTTCGAGCTCGCGACTCGCGGACAGGCGTTCTCGGCGCGGAGAAGCCGGCCTTGGAGT
CGTCGCCTTAGTGCCTTTCATCTGAGAAGTTCAGGGCACTTTGTAGAACTTCTGCCACAC
AGGCCGTTGGTCTTGCAGCACATTTGTAAGCAATGGCTGCCATCAGGAAGAAACTGGTGA
TTGTTGGTGATGGAGCCTGTGGCAAGACTTGTTTGCTCATTGTCTTTAGCAAGGACCAAT
TCCCGGAGGTATATGTACCTACCGTGTTTGAAAACTATGTTGCAGATATCGAGGTGGATG
GAAAGCAGGTAGAGTTGGCTTTGTGGGACACAGCAGGACAGGAAGATTATGATCGTTTGA
GGCCCCTCTCCTACCCGGATACTGATGTTATACTGATGTGTTTCTCTATTGATAGCCCTG
ATAGTTTAGAAAACATCCCAGAAAAATGGACTCCAGAAGTCAAGCATTTCTGTCCCAATG
TGCCCATCATCCTGGTTGGGAACAAGAAGGATCTTCGAAATGATGAGCACACAAGGCGTG
AGCTAGCTAAGATGAAGCAGGAGCCAGTAAAACCAGAAGAAGGCAGAGATATGGCAAACA
GGATTGGTGCTTTTGGGTACATGGAGTGTTCAGCAAAGACCAAAGATGGAGTGAGGGAGG
TTTTTGAAATGGCCACGAGAGCTGCTCTGCAAGCCCGACGTGGGAAGAAAAAATCTGGGT
GCCTTGTCTTGTGAAACCCTGCTGCAAGCACAGCCCTTACGCGGTTAATTTTGAAGTGCT
GTTTATTAATCTTAGTGTATGATTACTGGCCTTTTCATTTATCTATAATTTACCTAAGAT
TACAAATCAGAAGTCATCTTGCTACCAGTATTTAGAAGCCAACCATGATTATTAATGATG
TCCAACCCACCTGACCTACCAGGGTCCTTCTGACACTGCTCTAACAGCCCTCCTCTGCAC
TCCTACCTGACACCAGGCGCTAATTCAAGGAATTTCTTAACTTCTTGCTTCTTTCTAGAA
AGAGAAACAGTTGGTAACTTTTGTGAATTAGGCTGTAACTACTTTATAACTAACATGTCC
TGCCTGTCATCTGTCAGCTGCAAGGTACTCTGGTGAGTTACCACTTCAGAGCTTTACTCC
TTTTAACAGATTTCATTGGCTTAGCTCTGGGGTGGGTATCCAGTTTTTTGAAAATGTGCT
CAGCCAGAAAGGCCCAAGTCTGCGCAGCTGTGGCAAAGTTACAGTTCTGTGGTTTCATGT
TAGTTACCTTATAGTTACTGTGTAATTAGTGCCGCTTAATGTATGTTACCAAAAATAAAT
ATATCTACTCCCAGAAAAAAAAAAGTATTTTTTGTATAATTGGATTTCCTAATACTGATA
TTTGTCATCCCCACAGAAAGTGTATTGGTTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCGCTCCCCGCCCTCCCGCCGCCGTCGCCGCCCGCTCTTGCTCTCTCGCGCTCCCCGC
CCGTCGCTCTCCGTCGGTTCTCTCGTTAGTCCACCGCCACCTCCACAGCCACCCGCCGTA
GTCTTCGAGCTCGCGACTCGCGGACAGGCGTTCTCGGCGCGGAGAAGCCGGCCTTGGAGT
CGTCGCCTTAGTGCCTTTCATCTGAGAAGTTCAGGGCACTTTGTAGAACTTCTGCCACAC
AGGCCGTTGGTCTTGCAGCACATTTGTAAGCAATGGCTGCCATCAGGAAGAAACTGGTGA
TTGTTGGTGATGGAGCCTGTGGCAAGACTTGTTTGCTCATTGTCTTTAGCAAGGACCAAT
TCCCGGAGGTATATGTACCTACCGTGTTTGAAAACTATGTTGCAGATATCGAGGTGGATG
GAAAGCAGGTAGAGTTGGCTTTGTGGGACACAGCAGGACAGGAAGATTATGATCGTTTGA
GGCCCCTCTCCTACCCGGATACTGATGTTATACTGATGTGTTTCTCTATTGATAGCCCTG
ATAGTTTAGAAAACATCCCAGAAAAATGGACTCCAGAAGTCAAGCATTTCTGTCCCAATG
TGCCCATCATCCTGGTTGGGAACAAGAAGGATCTTCGAAATGATGAGCACACAAGGCGTG
AGCTAGCTAAGATGAAGCAGGAGCCAGTAAAACCAGAAGAAGGCAGAGATATGGCAAACA
GGATTGGTGCTTTTGGGTACATGGAGTGTTCAGCAAAGACCAAAGATGGAGTGAGGGAGG
TTTTTGAAATGGCCACGAGAGCTGCTCTGCAAGCCCGACGTGGGAAGAAAAAATCTGGGT
GCCTTGTCTTGTGAAACCCTGCTGCAAGCACAGCCCTTACGCGGTTAATTTTGAAGTGCT
GTTTATTAATCTTAGTGTATGATTACTGGCCTTTTCATTTATCTATAATTTACCTAAGAT
TACAAATCAGAAGTCATCTTGCTACCAGTATTTAGAAGCCAACCATGATTATTAATGATG
TCCAACCCACCTGACCTACCAGGGTCCTTCTGACACTGCTCTAACAGCCCTCCTCTGCAC
TCCTACCTGACACCAGGCGCTAATTCAAGGAATTTCTTAACTTCTTGCTTCTTTCTAGAA
AGAGAAACAGTTGGTAACTTTTGTGAATTAGGCTGTAACTACTTTATAACTAACATGTCC
TGCCTGTCATCTGTCAGCTGCAAGGTACTCTGGTGAGTTACCACTTCAGAGCTTTACTCC
TTTTAACAGATTTCATTGGCTTAGCTCTGGGGTGGGTATCCAGTTTTTTGAAAATGTGCT
CAGCCAGAAAGGCCCAAGTCTGCGCAGCTGTGGCAAAGTTACAGTTCTGTGGTTTCATGT
TAGTTACCTTATAGTTACTGTGTAATTAGTGCCGCTTAATGTATGTTACCAAAAATAAAT
ATATCTACTCCCAGAAAAAAAAAAGTATTTTTTGTATAATTGGATTTCCTAATACTGATA
TTTGTCATCCCCACAGAAAGTGTATTGGTTGTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|54696602|gb|AAV38673.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54696602|gb|AAV38673.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               273-811, gnl|bosTau2|chr11 (61538098-61538636)
               

               
               273-811, gnl|Hg17|chr2 (20568855-20569393)
               

               
               273-811, gnl|Mm7|chr12 (8525665-8525127)
               


               
               1412-1536, gnl|bosTau2|chr2 (58964891-58965014)
               

               
               1412-1536, gnl|Hg17|chr3 (49372091-49371983)
               

               
               1412-1536, gnl|Mm7|chr9 (108070700-108070855)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-811, gnl|bosTau2|chr11 (61538098-61538636)
               

               
               273-811, gnl|Hg17|chr2 (20568855-20569393)
               

               
               273-811, gnl|Mm7|chr12 (8525665-8525127)
               


               
               1412-1536, gnl|bosTau2|chr2 (58964891-58965014)
               

               
               1412-1536, gnl|Hg17|chr3 (49372091-49371983)
               

               
               1412-1536, gnl|Mm7|chr9 (108070700-108070855)

Expressed library(ies): 44 entry(ies)

More info

Expressed library(ies): 44 entry(ies)

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               csp (0.644745)
               

               
               hea (0.613497)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               clu (0.478583)
               

               
               cbl (0.45919)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.644745)
               

               
               hea (0.613497)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               clu (0.478583)
               

               
               cbl (0.45919)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	273-811, gnl\|bosTau2\|chr11 (61538098-61538636)
	273-811, gnl\|Hg17\|chr2 (20568855-20569393)
	273-811, gnl\|Mm7\|chr12 (8525665-8525127)

	1412-1536, gnl\|bosTau2\|chr2 (58964891-58965014)
	1412-1536, gnl\|Hg17\|chr3 (49372091-49371983)
	1412-1536, gnl\|Mm7\|chr9 (108070700-108070855)

	csp (0.644745)
	hea (0.613497)
	ill (0.526778)
	sin (0.524843)
	pro (0.512033)
	clu (0.478583)
	cbl (0.45919)
	amn (0.417711)
	cty (0.41632)
	col (0.390016)
	elu (0.385356)
	fhi (0.339155)
	ski (0.29347)
	lin (0.291206)
	spl (0.286369)
	nmm (0.265604)
	ute (0.265569)
	ret (0.257467)
	sug (0.254582)
	ese (0.253004)
	eru (0.240096)
	med (0.232504)
	ece (0.229305)
	nms (0.213858)
	tes (0.207814)
	nlu (0.191681)
	sag (0.182715)
	ton (0.1755)
	fbs (0.175346)
	cki (0.165235)
	nco (0.161734)
	isp (0.150376)
	csk (0.140746)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)