Ss1.1-Thy1-THY010055E03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGGGAGCCGCCAGGAGCGGATGGCGGCGGTGGTAGCGGCCTCACTCGCCGCTGGGGGT GAGGAGGCGGCGGCCACAACCTCCGTCCCAGGATCTCCGGGTCTGCCCGGGAGCCGCAGT GCAGAGCGGGCTCTAGAGGAGGCCGTGGCCACCGGGACCCTGAACCTGTCTAACCGGCGT TTGAAGCACTTCCCCCGGGGCGCGGCCCGCAGCTACGACCTGTCAGACATCACCCAGGCT GACCTGTCCCGGAACCGGTTCCCCGAGGTGCCAGAGGCAGCGTGCCAGCTGGTGTCCCTG GAGGGCCTGAGCCTGTACCACAATTGCCTGAGATGCCTGAACCCAGCCTTGGGGAATCTC ACAGCTCTCACCTACCTCAACCTCAGCCGAAACCAGCTGTCATCGCTGCCACCCTATATC TGCCAGCTGCCCCTGCGAGTGCTCATTGTCAGCAACAACAAACTGGGAGCCCTGCCTCCC GACATCAGCGCCCTGGGAAGCCTGCGACAGCTTGATGTGAGCAGCAATGAGTTGCAGTCT CTGCCCTCAGAGCTGTGCAGTCTCCCTTCCCTGCGGGATCTCAATGTTCGCAGGAACCAG CTGAGCACCCTGCCGGATGAGCTGGGGGACCTTCCTCTTGTCCGCCTGGATTTCTCCTGT AACCGTGTCTCCCGCATCCCGGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTCATTCTG CTGGACAGCAACCCCCTGCAAAGCCCACCTGCTCAGGTCTGCCTGAAGGGGAAACTTCAC ATCTTCAAGTATTTGTCAACGGAGGCTGGGCGGCGCGGGGGGTCTGCACTGGGAGACCTG GCCCCTTCCCGCCCCCCGAGTTTCAGTCCCTGCCCAGCTGAGGACTTGTTTCCGGGACGT CGGTACGACGGTGGGCTGGACTCAGGCTTCCACAGCGTTGACAGTGGCAGCAAGAGGTGG TCTGGAAATGAGTCGACGGATGAGTTTTCTGAGCTGTCGTTCCGGATCTCGGAGCTGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGGGAGCCGCCAGGAGCGGATGGCGGCGGTGGTAGCGGCCTCACTCGCCGCTGGGGGT GAGGAGGCGGCGGCCACAACCTCCGTCCCAGGATCTCCGGGTCTGCCCGGGAGCCGCAGT GCAGAGCGGGCTCTAGAGGAGGCCGTGGCCACCGGGACCCTGAACCTGTCTAACCGGCGT TTGAAGCACTTCCCCCGGGGCGCGGCCCGCAGCTACGACCTGTCAGACATCACCCAGGCT GACCTGTCCCGGAACCGGTTCCCCGAGGTGCCAGAGGCAGCGTGCCAGCTGGTGTCCCTG GAGGGCCTGAGCCTGTACCACAATTGCCTGAGATGCCTGAACCCAGCCTTGGGGAATCTC ACAGCTCTCACCTACCTCAACCTCAGCCGAAACCAGCTGTCATCGCTGCCACCCTATATC TGCCAGCTGCCCCTGCGAGTGCTCATTGTCAGCAACAACAAACTGGGAGCCCTGCCTCCC GACATCAGCGCCCTGGGAAGCCTGCGACAGCTTGATGTGAGCAGCAATGAGTTGCAGTCT CTGCCCTCAGAGCTGTGCAGTCTCCCTTCCCTGCGGGATCTCAATGTTCGCAGGAACCAG CTGAGCACCCTGCCGGATGAGCTGGGGGACCTTCCTCTTGTCCGCCTGGATTTCTCCTGT AACCGTGTCTCCCGCATCCCGGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTCATTCTG CTGGACAGCAACCCCCTGCAAAGCCCACCTGCTCAGGTCTGCCTGAAGGGGAAACTTCAC ATCTTCAAGTATTTGTCAACGGAGGCTGGGCGGCGCGGGGGGTCTGCACTGGGAGACCTG GCCCCTTCCCGCCCCCCGAGTTTCAGTCCCTGCCCAGCTGAGGACTTGTTTCCGGGACGT CGGTACGACGGTGGGCTGGACTCAGGCTTCCACAGCGTTGACAGTGGCAGCAAGAGGTGG TCTGGAAATGAGTCGACGGATGAGTTTTCTGAGCTGTCGTTCCGGATCTCGGAGCTGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.658313 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.658313 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-241, gnl|bosTau2|chr25 (32380908-32381148) | |
| 1-241, gnl|canFam2|chr6 (12109322-12109170) | |
| 1-241, gnl|echTel1|scaffold_293363 (39233-39385) | |
| 1-241, gnl|fr1|chrUn (164138004-164138137) | |
| 1-241, gnl|hg17|chr7 (99828154-99828306) | |
| 1-241, gnl|Hg17|chr7 (99828395-99828155) | |
| 1-241, gnl|mm7|chr5 (136547431-136547279) | |
| 1-241, gnl|Mm7|chr5 (136547188-136547428) | |
| 1-241, gnl|monDom2|scaffold_66 (2441312-2441464) | |
| 1-241, gnl|oryCun1|scaffold_180913 (14477-14629) | |
| 1-241, gnl|panTro1|chr6 (101603176-101603314) | |
| 1-241, gnl|rn3|chr12 (19684251-19684099) | |
| 1-241, gnl|tetNig1|chrUn_random (88041192-88041327) | |
| 384-531, gnl|bosTau2|chr25 (32384867-32385017) | |
| 384-531, gnl|Hg17|chr7 (99824444-99824298) | |
| 384-531, gnl|Mm7|chr5 (136551848-136551997) | |
| 606-758, gnl|bosTau2|chr25 (32387058-32387209) | |
| 606-758, gnl|canFam2|chr6 (12115742-12115577) | |
| 606-758, gnl|danRer3|chr18 (41856735-41856585) | |
| 606-758, gnl|dasNov1|scaffold_31618 (16597-16740) | |
| 606-758, gnl|echTel1|scaffold_293363 (32538-32699) | |
| 606-758, gnl|fr1|chrUn (164129992-164130118) | |
| 606-758, gnl|hg17|chr7 (99820921-99821089) | |
| 606-758, gnl|Hg17|chr7 (99821076-99820922) | |
| 606-758, gnl|loxAfr1|scaffold_74399 (5607-5447) | |
| 606-758, gnl|mm7|chr5 (136554882-136554716) | |
| 606-758, gnl|Mm7|chr5 (136554728-136554879) | |
| 606-758, gnl|monDom2|scaffold_66 (2435687-2435866) | |
| 606-758, gnl|oryCun1|scaffold_180913 (6132-6297) | |
| 606-758, gnl|panTro1|chr6 (101595886-101596054) | |
| 606-758, gnl|rn3|chr12 (19690940-19690774) | |
| 606-758, gnl|tetNig1|chrUn_random (88037051-88037199) | |
| 606-758, gnl|xenTro1|scaffold_1056 (214097-214266) | |
| 868-972, gnl|bosTau2|chr25 (32387577-32387681) | |
| 868-972, gnl|canFam2|chr6 (12116251-12116134) | |
| 868-972, gnl|danRer3|chr18 (41857064-41856962) | |
| 868-972, gnl|echTel1|scaffold_293363 (32065-32179) | |
| 868-972, gnl|fr1|chrUn (164129642-164129751) | |
| 868-972, gnl|hg17|chr7 (99820422-99820539) | |
| 868-972, gnl|Hg17|chr7 (99820537-99820433) | |
| 868-972, gnl|loxAfr1|scaffold_57288 (2865-2764) | |
| 868-972, gnl|mm7|chr5 (136555327-136555210) | |
| 868-972, gnl|Mm7|chr5 (136555210-136555314) | |
| 868-972, gnl|monDom2|scaffold_66 (2435103-2435220) | |
| 868-972, gnl|oryCun1|scaffold_180913 (5645-5762) | |
| 868-972, gnl|rn3|chr12 (19691385-19691268) | |
| 868-972, gnl|tetNig1|chrUn_random (88036726-88036854) | |
| 868-972, gnl|xenTro1|scaffold_1056 (213579-213687) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-241, gnl|bosTau2|chr25 (32380908-32381148) | |
| 1-241, gnl|canFam2|chr6 (12109322-12109170) | |
| 1-241, gnl|echTel1|scaffold_293363 (39233-39385) | |
| 1-241, gnl|fr1|chrUn (164138004-164138137) | |
| 1-241, gnl|hg17|chr7 (99828154-99828306) | |
| 1-241, gnl|Hg17|chr7 (99828395-99828155) | |
| 1-241, gnl|mm7|chr5 (136547431-136547279) | |
| 1-241, gnl|Mm7|chr5 (136547188-136547428) | |
| 1-241, gnl|monDom2|scaffold_66 (2441312-2441464) | |
| 1-241, gnl|oryCun1|scaffold_180913 (14477-14629) | |
| 1-241, gnl|panTro1|chr6 (101603176-101603314) | |
| 1-241, gnl|rn3|chr12 (19684251-19684099) | |
| 1-241, gnl|tetNig1|chrUn_random (88041192-88041327) | |
| 384-531, gnl|bosTau2|chr25 (32384867-32385017) | |
| 384-531, gnl|Hg17|chr7 (99824444-99824298) | |
| 384-531, gnl|Mm7|chr5 (136551848-136551997) | |
| 606-758, gnl|bosTau2|chr25 (32387058-32387209) | |
| 606-758, gnl|canFam2|chr6 (12115742-12115577) | |
| 606-758, gnl|danRer3|chr18 (41856735-41856585) | |
| 606-758, gnl|dasNov1|scaffold_31618 (16597-16740) | |
| 606-758, gnl|echTel1|scaffold_293363 (32538-32699) | |
| 606-758, gnl|fr1|chrUn (164129992-164130118) | |
| 606-758, gnl|hg17|chr7 (99820921-99821089) | |
| 606-758, gnl|Hg17|chr7 (99821076-99820922) | |
| 606-758, gnl|loxAfr1|scaffold_74399 (5607-5447) | |
| 606-758, gnl|mm7|chr5 (136554882-136554716) | |
| 606-758, gnl|Mm7|chr5 (136554728-136554879) | |
| 606-758, gnl|monDom2|scaffold_66 (2435687-2435866) | |
| 606-758, gnl|oryCun1|scaffold_180913 (6132-6297) | |
| 606-758, gnl|panTro1|chr6 (101595886-101596054) | |
| 606-758, gnl|rn3|chr12 (19690940-19690774) | |
| 606-758, gnl|tetNig1|chrUn_random (88037051-88037199) | |
| 606-758, gnl|xenTro1|scaffold_1056 (214097-214266) | |
| 868-972, gnl|bosTau2|chr25 (32387577-32387681) | |
| 868-972, gnl|canFam2|chr6 (12116251-12116134) | |
| 868-972, gnl|danRer3|chr18 (41857064-41856962) | |
| 868-972, gnl|echTel1|scaffold_293363 (32065-32179) | |
| 868-972, gnl|fr1|chrUn (164129642-164129751) | |
| 868-972, gnl|hg17|chr7 (99820422-99820539) | |
| 868-972, gnl|Hg17|chr7 (99820537-99820433) | |
| 868-972, gnl|loxAfr1|scaffold_57288 (2865-2764) | |
| 868-972, gnl|mm7|chr5 (136555327-136555210) | |
| 868-972, gnl|Mm7|chr5 (136555210-136555314) | |
| 868-972, gnl|monDom2|scaffold_66 (2435103-2435220) | |
| 868-972, gnl|oryCun1|scaffold_180913 (5645-5762) | |
| 868-972, gnl|rn3|chr12 (19691385-19691268) | |
| 868-972, gnl|tetNig1|chrUn_random (88036726-88036854) | |
| 868-972, gnl|xenTro1|scaffold_1056 (213579-213687) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |