Ss1.1-Thy1-THY010055F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCGTGCTTGGGGCTCCGGGCGTGGGGAGGCTGGCAGCTACCTGCCCGCTGGGCAATC ATGGTCCGGGGTCCGGCGGGCGCCTGGGCCGTGCTCGGCCCGCTGCTCTGGGGCTGCGGG CTGGCGCTGCTGCAGGGCGGGATGCTCTACCCCCAGGAGAGCCGATCGCGGGAGCGCAAG GAGTTGAATGGCCTCTGGAGTTTCCGCGCCGACTTCTCCGACAACCGGCGCCAGGGCTTC GAGCAGCAGTGGTACCGGAAGCCGCTGCGGGAGTCGGGCCCCACCCTGGACATGCCGGTT CCCTCCAGCTTCAACGACATAAGCCAGGACGGGCGGCTGCGGAGCTTTATCGGCTGGGTG TGGTATGAACGGGAGGCCATCCTGCCCCAGCGATGGACCCAGGACCTGGGCACCAGAGTG GTGCTGAGGATCAGCAGTGCCCACTACTACGCCATTGTGTGGGTGAATGGAGTCCATGTG ACAGAGCACGAAGGGGGCCACCTCCCCTTCGAGGCCGACATCAGCAAGCTGGTCCAGACT GGGCCCCTGTCCTCCTGCCGCATCACCATCGCCATCAACAACACGCTGTCCCCCCACACC CTGCCGCCAGGGACCATTCTCTATAAGACGGACACCTCCAAGTACCCCAAGGGTTACTTT GTCCAGAACACGAACTTTGACTTCTTCAACTACGCGGGACTGCATCGGCCCGTGCTCCTC TACACCACGCCTACCGCCTACATCGATGACATCACCGTCACCACCGACGTGGACCAGGAC ACAGGACTGGTGAATTACCAGATTTTTGTCCAGGGCAGTGACCACTTCCAGCTGGAAGTG CACCTTCTGGATGAGGAAGGCAGGGTGGTGGCCAAGGGGACGGGGGGCCAGGGCCAGCTG CAGGTGCCCAGTGCCCATCTCTGGTGGCCGTACCTGATGCACGAGCGCCCTGCCTACCTG TACTCGTTGGAGGTGAAGCTCACGGCACAGACCTCCGCTGGGCCCCTCTCTGACTTCTAC ACCCTCCCTGTGGGGATTCGCACCGTGGCTGTCACAGAGAGACAGTTCCTCATCAACGGG AAACCTTTCTATTTCCATGGGGTTAACAAGCACGAGGATGCAGATATCCGAGGCAAGGGC TTTGACTGGTCGCTGCTGGTGAAGGACTTCAACCTGCTCCGCTGGCTGGGTGCCAACGCC TTCCGCACCAGCCACTACCCCTACGCAGAGGAGGTGATGCAGCTCTGTGACCGTTATGGG ATCGTGGTCATCGATGAGAGTCCGGGTGTGGGCATCGTGCTGGCCCAGAGCTTCAGCAAC GCGTCTCTGCAGCACCACCTAGAGGTGATGGAGGAGATGGTTCGCAGGGACAAGAACCAC CCGGCCGTTGTGATGTGGTCCGTGGCCAATGAGCCTTCTTCCTTCCTGGAACAGGCTGCT TACTACTTCAAGATGCTGATCGGCCACACCAAAGCCTTGGACCCCTCCCGGCCCGTGACC TTCGTGACCAGCTCCAGCTATGAAAAAGACCTGGGGGTGCCGTATGTGGACGTGATCTGT GTGAACAGTTACTACTCCTGGTATCATGACTACGGTCACATGGAGGTGATTCAGCTGCAG CTGGCCACCCAGTTTGAGAGGTGGCATGAGGCCTACCAGAAACCAATTATCCAGAGCGAG TACGGGGCAGAAACCATCATAGGGTTTCACGAGGATCCACCTCTCATGTTCAGTGAAGAA TACCAGAAAGGCCTGCTACAGCAGTATCATGTGATTCTGGATCAAAAACGCAAAGAATAT GTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTTATGACCGACCAATCACCTCAGAGG GCCATAGGGAATAGAAAAGGGATCTTCACTCGACAGAGACAACCAAAAAGTGCAGCATTC CTGTTGCGAGAGAGGTACTGGAAACTTGCCAATGAAACCAGGTACCTGCAGTCAGCTGTG ATGTCACAGTGTGTGGGAAACAGCCCGTTTACCGTTTAAAGCAAGAACTACCTCTCTGCT GACACCGGCTTCTGCCCAAGGACAACCTCCCCAGCACCCTGAGTGAGTGCTTCCCGGCCT GGGCATGGCAGGCCGGGCGGGAAGTTTCTGGTCTGAATCTGGTAGTCATTTGCTAGAAGG GCACATTAGGGGCGAAAATAAAGGCTTTTGTACTATGAGACTAAAGAGTTGGCTTAAAAG GGACCATCCATAAATTGAATGATCGGTACTGCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCGTGCTTGGGGCTCCGGGCGTGGGGAGGCTGGCAGCTACCTGCCCGCTGGGCAATC ATGGTCCGGGGTCCGGCGGGCGCCTGGGCCGTGCTCGGCCCGCTGCTCTGGGGCTGCGGG CTGGCGCTGCTGCAGGGCGGGATGCTCTACCCCCAGGAGAGCCGATCGCGGGAGCGCAAG GAGTTGAATGGCCTCTGGAGTTTCCGCGCCGACTTCTCCGACAACCGGCGCCAGGGCTTC GAGCAGCAGTGGTACCGGAAGCCGCTGCGGGAGTCGGGCCCCACCCTGGACATGCCGGTT CCCTCCAGCTTCAACGACATAAGCCAGGACGGGCGGCTGCGGAGCTTTATCGGCTGGGTG TGGTATGAACGGGAGGCCATCCTGCCCCAGCGATGGACCCAGGACCTGGGCACCAGAGTG GTGCTGAGGATCAGCAGTGCCCACTACTACGCCATTGTGTGGGTGAATGGAGTCCATGTG ACAGAGCACGAAGGGGGCCACCTCCCCTTCGAGGCCGACATCAGCAAGCTGGTCCAGACT GGGCCCCTGTCCTCCTGCCGCATCACCATCGCCATCAACAACACGCTGTCCCCCCACACC CTGCCGCCAGGGACCATTCTCTATAAGACGGACACCTCCAAGTACCCCAAGGGTTACTTT GTCCAGAACACGAACTTTGACTTCTTCAACTACGCGGGACTGCATCGGCCCGTGCTCCTC TACACCACGCCTACCGCCTACATCGATGACATCACCGTCACCACCGACGTGGACCAGGAC ACAGGACTGGTGAATTACCAGATTTTTGTCCAGGGCAGTGACCACTTCCAGCTGGAAGTG CACCTTCTGGATGAGGAAGGCAGGGTGGTGGCCAAGGGGACGGGGGGCCAGGGCCAGCTG CAGGTGCCCAGTGCCCATCTCTGGTGGCCGTACCTGATGCACGAGCGCCCTGCCTACCTG TACTCGTTGGAGGTGAAGCTCACGGCACAGACCTCCGCTGGGCCCCTCTCTGACTTCTAC ACCCTCCCTGTGGGGATTCGCACCGTGGCTGTCACAGAGAGACAGTTCCTCATCAACGGG AAACCTTTCTATTTCCATGGGGTTAACAAGCACGAGGATGCAGATATCCGAGGCAAGGGC TTTGACTGGTCGCTGCTGGTGAAGGACTTCAACCTGCTCCGCTGGCTGGGTGCCAACGCC TTCCGCACCAGCCACTACCCCTACGCAGAGGAGGTGATGCAGCTCTGTGACCGTTATGGG ATCGTGGTCATCGATGAGAGTCCGGGTGTGGGCATCGTGCTGGCCCAGAGCTTCAGCAAC GCGTCTCTGCAGCACCACCTAGAGGTGATGGAGGAGATGGTTCGCAGGGACAAGAACCAC CCGGCCGTTGTGATGTGGTCCGTGGCCAATGAGCCTTCTTCCTTCCTGGAACAGGCTGCT TACTACTTCAAGATGCTGATCGGCCACACCAAAGCCTTGGACCCCTCCCGGCCCGTGACC TTCGTGACCAGCTCCAGCTATGAAAAAGACCTGGGGGTGCCGTATGTGGACGTGATCTGT GTGAACAGTTACTACTCCTGGTATCATGACTACGGTCACATGGAGGTGATTCAGCTGCAG CTGGCCACCCAGTTTGAGAGGTGGCATGAGGCCTACCAGAAACCAATTATCCAGAGCGAG TACGGGGCAGAAACCATCATAGGGTTTCACGAGGATCCACCTCTCATGTTCAGTGAAGAA TACCAGAAAGGCCTGCTACAGCAGTATCATGTGATTCTGGATCAAAAACGCAAAGAATAT GTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTTATGACCGACCAATCACCTCAGAGG GCCATAGGGAATAGAAAAGGGATCTTCACTCGACAGAGACAACCAAAAAGTGCAGCATTC CTGTTGCGAGAGAGGTACTGGAAACTTGCCAATGAAACCAGGTACCTGCAGTCAGCTGTG ATGTCACAGTGTGTGGGAAACAGCCCGTTTACCGTTTAAAGCAAGAACTACCTCTCTGCT GACACCGGCTTCTGCCCAAGGACAACCTCCCCAGCACCCTGAGTGAGTGCTTCCCGGCCT GGGCATGGCAGGCCGGGCGGGAAGTTTCTGGTCTGAATCTGGTAGTCATTTGCTAGAAGG GCACATTAGGGGCGAAAATAAAGGCTTTTGTACTATGAGACTAAAGAGTTGGCTTAAAAG GGACCATCCATAAATTGAATGATCGGTACTGCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 1536-1714, gnl|bosTau2|chr25 (23692287-23692109) | |
| 1536-1714, gnl|canFam2|chr6 (3736358-3736546) | |
| 1536-1714, gnl|canFam2|chr6 (3736362-3736548) | |
| 1536-1714, gnl|canFam2|chr6 (3736544-3736358) | |
| 1536-1714, gnl|canFam2|chr6 (3736544-3736361) | |
| 1536-1714, gnl|danRer3|chr8 (4553035-4552851) | |
| 1536-1714, gnl|danRer3|chr8 (4553035-4552852) | |
| 1536-1714, gnl|danRer3|chr8 (4552853-4553035) | |
| 1536-1714, gnl|danRer3|chr8 (4552853-4553035) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (447-271) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (447-271) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (269-443) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (269-443) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16045-16231) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16047-16233) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16229-16045) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16229-16045) | |
| 1536-1714, gnl|fr1|chrUn (282611274-282611088) | |
| 1536-1714, gnl|fr1|chrUn (282611272-282611086) | |
| 1536-1714, gnl|fr1|chrUn (282611090-282611286) | |
| 1536-1714, gnl|fr1|chrUn (282611090-282611276) | |
| 1536-1714, gnl|galGal2|chr19 (4617813-4618001) | |
| 1536-1714, gnl|galGal2|chr19 (4617817-4618001) | |
| 1536-1714, gnl|galGal2|chr19 (4617999-4617795) | |
| 1536-1714, gnl|galGal2|chr19 (4617999-4617814) | |
| 1536-1714, gnl|hg17|chr5 (21532888-21533071) | |
| 1536-1714, gnl|hg17|chr6 (26959097-26959281) | |
| 1536-1714, gnl|hg17|chr7 (64876860-64877048) | |
| 1536-1714, gnl|Hg17|chr7 (64877045-64876867) | |
| 1536-1714, gnl|hg17|chr8_random (864958-865151) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4584-4396) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4580-4394) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4398-4593) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4398-4583) | |
| 1536-1714, gnl|mm7|chr5 (129231234-129231422) | |
| 1536-1714, gnl|mm7|chr5 (129231238-129231424) | |
| 1536-1714, gnl|mm7|chr5 (129231420-129231215) | |
| 1536-1714, gnl|mm7|chr5 (129231420-129231235) | |
| 1536-1714, gnl|Mm7|chr5 (129231419-129231241) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610842-610647) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610831-610645) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610649-610831) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610649-610834) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (4843-5029) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (4847-5031) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (5027-4834) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (5027-4847) | |
| 1536-1714, gnl|panTro1|chr6 (66521550-66521738) | |
| 1536-1714, gnl|panTro1|chr6 (66521554-66521740) | |
| 1536-1714, gnl|panTro1|chr6 (66521736-66521541) | |
| 1536-1714, gnl|panTro1|chr6 (66521736-66521551) | |
| 1536-1714, gnl|rheMac2|chr3 (59053892-59053704) | |
| 1536-1714, gnl|rheMac2|chr3 (59000782-59000596) | |
| 1536-1714, gnl|rheMac2|chr3 (59000600-59000795) | |
| 1536-1714, gnl|rheMac2|chr3 (59000600-59000785) | |
| 1536-1714, gnl|rn3|chr12 (27617775-27617587) | |
| 1536-1714, gnl|rn3|chr12 (27617771-27617585) | |
| 1536-1714, gnl|rn3|chr12 (27617589-27617797) | |
| 1536-1714, gnl|rn3|chr12 (27617589-27617774) | |
| 1536-1714, gnl|tetNig1|chr7 (1714146-1714330) | |
| 1536-1714, gnl|tetNig1|chr7 (1714146-1714329) | |
| 1536-1714, gnl|tetNig1|chr7 (1714328-1714146) | |
| 1536-1714, gnl|tetNig1|chr7 (1714328-1714146) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993883-993695) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993879-993693) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993697-993879) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993697-993880) | |
| 1864-2050, gnl|bosTau2|chr25 (23688471-23688285) | |
| 1864-2050, gnl|Hg17|chr7 (64870186-64870013) | |
| 1864-2050, gnl|Mm7|chr5 (129227497-129227318) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1536-1714, gnl|bosTau2|chr25 (23692287-23692109) | |
| 1536-1714, gnl|canFam2|chr6 (3736358-3736546) | |
| 1536-1714, gnl|canFam2|chr6 (3736362-3736548) | |
| 1536-1714, gnl|canFam2|chr6 (3736544-3736358) | |
| 1536-1714, gnl|canFam2|chr6 (3736544-3736361) | |
| 1536-1714, gnl|danRer3|chr8 (4553035-4552851) | |
| 1536-1714, gnl|danRer3|chr8 (4553035-4552852) | |
| 1536-1714, gnl|danRer3|chr8 (4552853-4553035) | |
| 1536-1714, gnl|danRer3|chr8 (4552853-4553035) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (447-271) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (447-271) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (269-443) | |
| 1536-1714, gnl|dasNov1|scaffold_204698 (269-443) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16045-16231) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16047-16233) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16229-16045) | |
| 1536-1714, gnl|echTel1|scaffold_185380 (16229-16045) | |
| 1536-1714, gnl|fr1|chrUn (282611274-282611088) | |
| 1536-1714, gnl|fr1|chrUn (282611272-282611086) | |
| 1536-1714, gnl|fr1|chrUn (282611090-282611286) | |
| 1536-1714, gnl|fr1|chrUn (282611090-282611276) | |
| 1536-1714, gnl|galGal2|chr19 (4617813-4618001) | |
| 1536-1714, gnl|galGal2|chr19 (4617817-4618001) | |
| 1536-1714, gnl|galGal2|chr19 (4617999-4617795) | |
| 1536-1714, gnl|galGal2|chr19 (4617999-4617814) | |
| 1536-1714, gnl|hg17|chr5 (21532888-21533071) | |
| 1536-1714, gnl|hg17|chr6 (26959097-26959281) | |
| 1536-1714, gnl|hg17|chr7 (64876860-64877048) | |
| 1536-1714, gnl|Hg17|chr7 (64877045-64876867) | |
| 1536-1714, gnl|hg17|chr8_random (864958-865151) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4584-4396) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4580-4394) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4398-4593) | |
| 1536-1714, gnl|loxAfr1|scaffold_6228 (4398-4583) | |
| 1536-1714, gnl|mm7|chr5 (129231234-129231422) | |
| 1536-1714, gnl|mm7|chr5 (129231238-129231424) | |
| 1536-1714, gnl|mm7|chr5 (129231420-129231215) | |
| 1536-1714, gnl|mm7|chr5 (129231420-129231235) | |
| 1536-1714, gnl|Mm7|chr5 (129231419-129231241) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610842-610647) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610831-610645) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610649-610831) | |
| 1536-1714, gnl|monDom2|scaffold_81 (610649-610834) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (4843-5029) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (4847-5031) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (5027-4834) | |
| 1536-1714, gnl|oryCun1|scaffold_143615 (5027-4847) | |
| 1536-1714, gnl|panTro1|chr6 (66521550-66521738) | |
| 1536-1714, gnl|panTro1|chr6 (66521554-66521740) | |
| 1536-1714, gnl|panTro1|chr6 (66521736-66521541) | |
| 1536-1714, gnl|panTro1|chr6 (66521736-66521551) | |
| 1536-1714, gnl|rheMac2|chr3 (59053892-59053704) | |
| 1536-1714, gnl|rheMac2|chr3 (59000782-59000596) | |
| 1536-1714, gnl|rheMac2|chr3 (59000600-59000795) | |
| 1536-1714, gnl|rheMac2|chr3 (59000600-59000785) | |
| 1536-1714, gnl|rn3|chr12 (27617775-27617587) | |
| 1536-1714, gnl|rn3|chr12 (27617771-27617585) | |
| 1536-1714, gnl|rn3|chr12 (27617589-27617797) | |
| 1536-1714, gnl|rn3|chr12 (27617589-27617774) | |
| 1536-1714, gnl|tetNig1|chr7 (1714146-1714330) | |
| 1536-1714, gnl|tetNig1|chr7 (1714146-1714329) | |
| 1536-1714, gnl|tetNig1|chr7 (1714328-1714146) | |
| 1536-1714, gnl|tetNig1|chr7 (1714328-1714146) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993883-993695) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993879-993693) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993697-993879) | |
| 1536-1714, gnl|xenTro1|scaffold_63 (993697-993880) | |
| 1864-2050, gnl|bosTau2|chr25 (23688471-23688285) | |
| 1864-2050, gnl|Hg17|chr7 (64870186-64870013) | |
| 1864-2050, gnl|Mm7|chr5 (129227497-129227318) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cov (0.925069) | |
| nje (0.49776) | |
| eje (0.395335) | |
| eye (0.341006) | |
| csp (0.322373) | |
| cty (0.31224) | |
| nmm (0.265604) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.925069) | |
| nje (0.49776) | |
| eje (0.395335) | |
| eye (0.341006) | |
| csp (0.322373) | |
| cty (0.31224) | |
| nmm (0.265604) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) |