Ss1.1-Thy1-THY010055G04.5.135
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAAAAAAAAAAAAAAACAGTACCCATTTGAGTGGGACTTGCCTGCTCCCTT CACACACTGTCCTCTCCTGTTCTCCAGCATGTTGCATCTGTGTTTCTCCAGAGGCTTCTG GATGGCGGCTCTGACTGTGATGCTGGTGGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGA CACCCCACCGCATTTCTTGCACCTGTTGAAATTCGAGTGTCATTTCTTCAATGGGACCGA GCGGGTGAGGTTATTGGAGAGGCAATACTATAACGGAGAGGAGTTCCTGCGCTTCGACAG CGACGTGGGCGAGTACCGGGCGGTGACCGAGCTGGGGCGGCCAGACGCCAAGGACTGGAA CAGCCAGAAGGACCTCCTGGAGCAGAGGCGGGCGGAGGTGGACACGTACTGCAGACACAA CTACCGGATCTTGGATACATTCCTGGTGCCGCGGCGAGCTGAGCCCACAGTGACGGTGTA TCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGACCGGGTT CTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGT GGTCTCCACAGGCCTGATCCCTAATGGAGACTGGACCTTCCAGACCATGGTGATGCTTGA AACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGCCGAGTGGAGCACCCCAGCCTGACGAG CCCCGTCACAGTGGAATGGAGGGCACGGTCTGAATCTGCTCAGGGCAAGATGATGAGTGG GATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTTGCTGTGGGGCTGTTCATCTACTTCAA GAATCAGAAAGGACGCCCTGCCCTTCAGCCAACAGGCCTCCTGAGCTGAAGTGCAGGTGG TGACACTCCAAGCAAGCATCCTCTGTGCCAGCGTCTTCACAGCATGAGAAGGCTCCTGCT ATGCTCTGCGTCCTCCCCCAGGAGAGCTCTTCCTCAGACTCTCCTTTGCTCCTGGTTCAG GGACCCTGCAGAAAAGGTCTTTTGATGGCTTTCTCAGCCTCCCCCCTTTGACTTGGAAGT TCCTGGCATTGATTGCTATGCCTATGTTCATTTTTCTTTTTTTTTTTTTTCCTGGTTGGT CCCTGTTGTTTTCGACGTTACTGCCTCCTGTGCATCTGAACTCATCCACTGCCCATATTA CCTTATTATGTTTTTCTCCAATAAATATGGAGTGACAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAAAAAAAAAAAAAAACAGTACCCATTTGAGTGGGACTTGCCTGCTCCCTT CACACACTGTCCTCTCCTGTTCTCCAGCATGTTGCATCTGTGTTTCTCCAGAGGCTTCTG GATGGCGGCTCTGACTGTGATGCTGGTGGTGCTGAGCCCTCCCTTGGCTTTGGCCAGGGA CACCCCACCGCATTTCTTGCACCTGTTGAAATTCGAGTGTCATTTCTTCAATGGGACCGA GCGGGTGAGGTTATTGGAGAGGCAATACTATAACGGAGAGGAGTTCCTGCGCTTCGACAG CGACGTGGGCGAGTACCGGGCGGTGACCGAGCTGGGGCGGCCAGACGCCAAGGACTGGAA CAGCCAGAAGGACCTCCTGGAGCAGAGGCGGGCGGAGGTGGACACGTACTGCAGACACAA CTACCGGATCTTGGATACATTCCTGGTGCCGCGGCGAGCTGAGCCCACAGTGACGGTGTA TCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTGACCGGGTT CTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGGAATGGCCAGGAAGAGGCGGCGGGGGT GGTCTCCACAGGCCTGATCCCTAATGGAGACTGGACCTTCCAGACCATGGTGATGCTTGA AACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGCCGAGTGGAGCACCCCAGCCTGACGAG CCCCGTCACAGTGGAATGGAGGGCACGGTCTGAATCTGCTCAGGGCAAGATGATGAGTGG GATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTTGCTGTGGGGCTGTTCATCTACTTCAA GAATCAGAAAGGACGCCCTGCCCTTCAGCCAACAGGCCTCCTGAGCTGAAGTGCAGGTGG TGACACTCCAAGCAAGCATCCTCTGTGCCAGCGTCTTCACAGCATGAGAAGGCTCCTGCT ATGCTCTGCGTCCTCCCCCAGGAGAGCTCTTCCTCAGACTCTCCTTTGCTCCTGGTTCAG GGACCCTGCAGAAAAGGTCTTTTGATGGCTTTCTCAGCCTCCCCCCTTTGACTTGGAAGT TCCTGGCATTGATTGCTATGCCTATGTTCATTTTTCTTTTTTTTTTTTTTCCTGGTTGGT CCCTGTTGTTTTCGACGTTACTGCCTCCTGTGCATCTGAACTCATCCACTGCCCATATTA CCTTATTATGTTTTTCTCCAATAAATATGGAGTGACAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 25-188, gnl|bosTau2|chr23 (21236046-21236209) | |
| 25-188, gnl|canFam2|chr12 (5254003-5254141) | |
| 25-188, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 25-188, gnl|echTel1|scaffold_103957 (609-463) | |
| 25-188, gnl|hg17|chr6 (32665390-32665536) | |
| 25-188, gnl|Hg17|chr6 (32665560-32665398) | |
| 25-188, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 25-188, gnl|mm7|chr17 (32383382-32383244) | |
| 25-188, gnl|Mm7|chr17 (32383227-32383372) | |
| 25-188, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 25-188, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 25-188, gnl|panTro1|chr5 (33118451-33118597) | |
| 25-188, gnl|rheMac2|chr4 (32322304-32322450) | |
| 25-188, gnl|rn3|chr20 (4681120-4681258) | |
| 215-424, gnl|bosTau2|chr23 (5464267-5464058) | |
| 215-424, gnl|Hg17|chr6 (32891042-32890833) | |
| 215-424, gnl|Mm7|chr17 (32410520-32410726) | |
| 461-757, gnl|bosTau2|chr23 (21244789-21245086) | |
| 461-757, gnl|Hg17|chr6 (32657591-32657293) | |
| 461-757, gnl|Mm7|chr17 (32391497-32391797) | |
| 873-1238, gnl|bosTau2|chr23 (21246706-21247067) | |
| 873-1238, gnl|Hg17|chr6 (32654862-32654522) | |
| 873-1238, gnl|Mm7|chr17 (32393196-32393522) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-188, gnl|bosTau2|chr23 (21236046-21236209) | |
| 25-188, gnl|canFam2|chr12 (5254003-5254141) | |
| 25-188, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 25-188, gnl|echTel1|scaffold_103957 (609-463) | |
| 25-188, gnl|hg17|chr6 (32665390-32665536) | |
| 25-188, gnl|Hg17|chr6 (32665560-32665398) | |
| 25-188, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 25-188, gnl|mm7|chr17 (32383382-32383244) | |
| 25-188, gnl|Mm7|chr17 (32383227-32383372) | |
| 25-188, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 25-188, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 25-188, gnl|panTro1|chr5 (33118451-33118597) | |
| 25-188, gnl|rheMac2|chr4 (32322304-32322450) | |
| 25-188, gnl|rn3|chr20 (4681120-4681258) | |
| 215-424, gnl|bosTau2|chr23 (5464267-5464058) | |
| 215-424, gnl|Hg17|chr6 (32891042-32890833) | |
| 215-424, gnl|Mm7|chr17 (32410520-32410726) | |
| 461-757, gnl|bosTau2|chr23 (21244789-21245086) | |
| 461-757, gnl|Hg17|chr6 (32657591-32657293) | |
| 461-757, gnl|Mm7|chr17 (32391497-32391797) | |
| 873-1238, gnl|bosTau2|chr23 (21246706-21247067) | |
| 873-1238, gnl|Hg17|chr6 (32654862-32654522) | |
| 873-1238, gnl|Mm7|chr17 (32393196-32393522) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| lnt (2.27693) | |
| cly (1.93027) | |
| csp (1.77305) | |
| col (1.75507) | |
| fty (0.879198) | |
| med (0.813764) | |
| cag (0.755972) | |
| clu (0.598229) | |
| ill (0.526778) | |
| duo (0.345602) | |
| cje (0.330469) | |
| cli (0.305623) | |
| spl (0.286369) | |
| hlv (0.278513) | |
| thg (0.253582) | |
| jca (0.22792) | |
| cty (0.20816) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (2.27693) | |
| cly (1.93027) | |
| csp (1.77305) | |
| col (1.75507) | |
| fty (0.879198) | |
| med (0.813764) | |
| cag (0.755972) | |
| clu (0.598229) | |
| ill (0.526778) | |
| duo (0.345602) | |
| cje (0.330469) | |
| cli (0.305623) | |
| spl (0.286369) | |
| hlv (0.278513) | |
| thg (0.253582) | |
| jca (0.22792) | |
| cty (0.20816) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| jej (0.0989218) |