Ss1.1-Thy1-THY010055G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCCTCTTCCTTCTCGCGCCTCGGCCCCTGCCCGATTCCAGGGGGCCTAGGAGTGTCA TTGGCGGATGACCGCAGCCCTCGTCGCCGCCCCGGCCGCCGCCACCATGGCCTCTGGCAG CAGCGGCCTTGCCGCCGCCCGCCTCCTCTCGCGCTCCTTCCTCCTGCAACAGAATGGAAT TCGGCATTGTTCCTATACAGCTTCCCGGAAGCATCTCTATGTTGATAAAAATACGAAGGT TATTTGCCAGGGTTTCACTGGTAAGCAGGGCACCTTTCATAGCCAGCAGGCGCTGGAATA TGGCACCAATCTAGTTGGAGGAACCACTCCAGGGAAAGGAGGCAAGACGCATCTGGGCCT ACCAGTCTTTAATACTGTGAAGGAGGCCAAAGAACAAACCGGAGCGACGGCATCTGTCAT TTATGTCCCTCCCCCTTTTGCTGCTGCTGCCATTAATGAAGCCATCGATGCAGAAGTGCC CTTGGTCGTGTGCATCACTGAAGGCATCCCGCAGCAGGACATGGTGCGGGTAAAGCACAG GCTGCTGCGCCAGGGAAAGACGAGGCTGATCGGGCCAAACTGCCCTGGAGTCATCAATCC TGGAGAATGCAAAATTGGCATCATGCCTGGCCATATTCACAAGAAAGGACGAATTGGTAT CGTGTCCAGATCTGGCACCCTGACTTATGAAGCAGTTCATCAAACAACACAAGTTGGCTT GGGGCAGTCTTTGTGTGTTGGCATTGGAGGTGATCCTTTCAATGGAACAGATTTTACTGA TTGCCTTGAAATCTTTCTGAATGATCCAGCCACAGAAGGCATCATATTGATTGGTGAAAT TGGTGGTAATGCGGAAGAGAATGCTGCAGAATTTTTGAAGCAACATAATTCAGGTCCCAA GTCCAAGCCGGTGGTGTCCTTCATTGCTGGCTTAACTGCCCCTCCTGGCAGAAGAATGGG TCACGCAGGGGCAATTATTGCTGGAGGAAAGGGAGGCGCTAAAGAGAAGATCACTGCCCT GCAGAGTGCAGGAGTTGTGGTCAGCATGTCTCCTGCACAGCTGGGAACCACCATCTACAA GGAGTTTGAAAAGAGGAAGATGCTATGAAAGCAAAACGAATGAGAAATTCCCTAAACCTG TGGAATGAATCATTGTAGAATTGTAAGCCCTGCCCTGTTGCTTCTGTCATCCTCTGTCAG CTTGGGCGCCTGCTGCTGGTCTTTGAGGCAACAGGAAGCCCAAACAAGGTTTAGCGTGTC CTGCTTTGAGATGGTTTCACCTCACCGAATAACAGACAGCCAATAAATCTACCACTTGAT TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCCTCTTCCTTCTCGCGCCTCGGCCCCTGCCCGATTCCAGGGGGCCTAGGAGTGTCA TTGGCGGATGACCGCAGCCCTCGTCGCCGCCCCGGCCGCCGCCACCATGGCCTCTGGCAG CAGCGGCCTTGCCGCCGCCCGCCTCCTCTCGCGCTCCTTCCTCCTGCAACAGAATGGAAT TCGGCATTGTTCCTATACAGCTTCCCGGAAGCATCTCTATGTTGATAAAAATACGAAGGT TATTTGCCAGGGTTTCACTGGTAAGCAGGGCACCTTTCATAGCCAGCAGGCGCTGGAATA TGGCACCAATCTAGTTGGAGGAACCACTCCAGGGAAAGGAGGCAAGACGCATCTGGGCCT ACCAGTCTTTAATACTGTGAAGGAGGCCAAAGAACAAACCGGAGCGACGGCATCTGTCAT TTATGTCCCTCCCCCTTTTGCTGCTGCTGCCATTAATGAAGCCATCGATGCAGAAGTGCC CTTGGTCGTGTGCATCACTGAAGGCATCCCGCAGCAGGACATGGTGCGGGTAAAGCACAG GCTGCTGCGCCAGGGAAAGACGAGGCTGATCGGGCCAAACTGCCCTGGAGTCATCAATCC TGGAGAATGCAAAATTGGCATCATGCCTGGCCATATTCACAAGAAAGGACGAATTGGTAT CGTGTCCAGATCTGGCACCCTGACTTATGAAGCAGTTCATCAAACAACACAAGTTGGCTT GGGGCAGTCTTTGTGTGTTGGCATTGGAGGTGATCCTTTCAATGGAACAGATTTTACTGA TTGCCTTGAAATCTTTCTGAATGATCCAGCCACAGAAGGCATCATATTGATTGGTGAAAT TGGTGGTAATGCGGAAGAGAATGCTGCAGAATTTTTGAAGCAACATAATTCAGGTCCCAA GTCCAAGCCGGTGGTGTCCTTCATTGCTGGCTTAACTGCCCCTCCTGGCAGAAGAATGGG TCACGCAGGGGCAATTATTGCTGGAGGAAAGGGAGGCGCTAAAGAGAAGATCACTGCCCT GCAGAGTGCAGGAGTTGTGGTCAGCATGTCTCCTGCACAGCTGGGAACCACCATCTACAA GGAGTTTGAAAAGAGGAAGATGCTATGAAAGCAAAACGAATGAGAAATTCCCTAAACCTG TGGAATGAATCATTGTAGAATTGTAAGCCCTGCCCTGTTGCTTCTGTCATCCTCTGTCAG CTTGGGCGCCTGCTGCTGGTCTTTGAGGCAACAGGAAGCCCAAACAAGGTTTAGCGTGTC CTGCTTTGAGATGGTTTCACCTCACCGAATAACAGACAGCCAATAAATCTACCACTTGAT TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 965-1082, + strand, RNAz p=0.82327 | |
| 965-1082, + strand, RNAz p=0.90633 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 965-1082, + strand, RNAz p=0.82327 | |
| 965-1082, + strand, RNAz p=0.90633 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr11 (37964561-37964398) | |
| 1-163, gnl|canFam2|chr17 (43457020-43456615) | |
| 1-163, gnl|dasNov1|scaffold_44513 (2610-2207) | |
| 1-163, gnl|echTel1|scaffold_324122 (72251-72652) | |
| 1-163, gnl|galGal2|chr4 (86257643-86257232) | |
| 1-163, gnl|hg17|chr2 (84597666-84598077) | |
| 1-163, gnl|Hg17|chr2 (84598118-84597956) | |
| 1-163, gnl|loxAfr1|scaffold_77499 (538-115) | |
| 1-163, gnl|mm7|chr6 (73266925-73266564) | |
| 1-163, gnl|Mm7|chr6 (73266524-73266683) | |
| 1-163, gnl|monDom2|scaffold_68 (8021100-8021526) | |
| 1-163, gnl|panTro1|chr12 (87461782-87462193) | |
| 1-163, gnl|rn3|chr4 (106816966-106816605) | |
| 165-269, gnl|bosTau2|chr11 (37955368-37955264) | |
| 165-269, gnl|canFam2|chr17 (43467027-43466894) | |
| 165-269, gnl|dasNov1|scaffold_44513 (13930-13791) | |
| 165-269, gnl|echTel1|scaffold_324122 (63225-63363) | |
| 165-269, gnl|galGal2|chr4 (86263890-86263756) | |
| 165-269, gnl|hg17|chr2 (84588405-84588555) | |
| 165-269, gnl|Hg17|chr2 (84588534-84588430) | |
| 165-269, gnl|mm7|chr6 (73274232-73274094) | |
| 165-269, gnl|Mm7|chr6 (73274102-73274206) | |
| 165-269, gnl|monDom2|scaffold_68 (8007369-8007519) | |
| 165-269, gnl|oryCun1|scaffold_182075 (10183-10045) | |
| 165-269, gnl|panTro1|chr12 (87452527-87452677) | |
| 165-269, gnl|rheMac2|chr13 (84964419-84964566) | |
| 165-269, gnl|rn3|chr4 (106824358-106824220) | |
| 165-269, gnl|xenTro1|scaffold_465 (474935-474810) | |
| 384-598, gnl|bosTau2|chr11 (37947904-37947690) | |
| 384-598, gnl|canFam2|chr17 (43475409-43475171) | |
| 384-598, gnl|dasNov1|scaffold_5311 (4822-5060) | |
| 384-598, gnl|echTel1|scaffold_324122 (54034-54272) | |
| 384-598, gnl|fr1|chrUn (302517082-302516844) | |
| 384-598, gnl|galGal2|chr4 (86265641-86265411) | |
| 384-598, gnl|hg17|chr2 (84580017-84580255) | |
| 384-598, gnl|Hg17|chr2 (84580243-84580029) | |
| 384-598, gnl|loxAfr1|scaffold_29786 (13816-13581) | |
| 384-598, gnl|mm7|chr6 (73281965-73281727) | |
| 384-598, gnl|Mm7|chr6 (73281737-73281951) | |
| 384-598, gnl|monDom2|scaffold_68 (8000507-8000745) | |
| 384-598, gnl|oryCun1|scaffold_193862 (13743-13981) | |
| 384-598, gnl|panTro1|chr12 (87444157-87444395) | |
| 384-598, gnl|rheMac2|chr13 (84957209-84957447) | |
| 384-598, gnl|rn3|chr4 (106832909-106832671) | |
| 384-598, gnl|tetNig1|chrUn_random (83531605-83531379) | |
| 384-598, gnl|xenTro1|scaffold_465 (477600-477377) | |
| 893-1082, gnl|bosTau2|chr11 (37932293-37932104) | |
| 893-1082, gnl|canFam2|chr17 (43486536-43486400) | |
| 893-1082, gnl|dasNov1|scaffold_34127 (5414-5550) | |
| 893-1082, gnl|echTel1|scaffold_324122 (44147-44280) | |
| 893-1082, gnl|fr1|chrUn (325635771-325635907) | |
| 893-1082, gnl|galGal2|chr4 (86270246-86270116) | |
| 893-1082, gnl|hg17|chr2 (84564190-84564326) | |
| 893-1082, gnl|Hg17|chr2 (84564385-84564196) | |
| 893-1082, gnl|loxAfr1|scaffold_46094 (13247-13384) | |
| 893-1082, gnl|mm7|chr6 (73293329-73293193) | |
| 893-1082, gnl|Mm7|chr6 (73293132-73293321) | |
| 893-1082, gnl|monDom2|scaffold_68 (7988655-7988791) | |
| 893-1082, gnl|oryCun1|scaffold_193862 (1110-1246) | |
| 893-1082, gnl|panTro1|chr12 (87428031-87428167) | |
| 893-1082, gnl|rheMac2|chr13 (84941533-84941669) | |
| 893-1082, gnl|rn3|chr4 (106844432-106844296) | |
| 893-1082, gnl|tetNig1|chrUn_random (83543415-83543282) | |
| 893-1082, gnl|xenTro1|scaffold_465 (487172-487042) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr11 (37964561-37964398) | |
| 1-163, gnl|canFam2|chr17 (43457020-43456615) | |
| 1-163, gnl|dasNov1|scaffold_44513 (2610-2207) | |
| 1-163, gnl|echTel1|scaffold_324122 (72251-72652) | |
| 1-163, gnl|galGal2|chr4 (86257643-86257232) | |
| 1-163, gnl|hg17|chr2 (84597666-84598077) | |
| 1-163, gnl|Hg17|chr2 (84598118-84597956) | |
| 1-163, gnl|loxAfr1|scaffold_77499 (538-115) | |
| 1-163, gnl|mm7|chr6 (73266925-73266564) | |
| 1-163, gnl|Mm7|chr6 (73266524-73266683) | |
| 1-163, gnl|monDom2|scaffold_68 (8021100-8021526) | |
| 1-163, gnl|panTro1|chr12 (87461782-87462193) | |
| 1-163, gnl|rn3|chr4 (106816966-106816605) | |
| 165-269, gnl|bosTau2|chr11 (37955368-37955264) | |
| 165-269, gnl|canFam2|chr17 (43467027-43466894) | |
| 165-269, gnl|dasNov1|scaffold_44513 (13930-13791) | |
| 165-269, gnl|echTel1|scaffold_324122 (63225-63363) | |
| 165-269, gnl|galGal2|chr4 (86263890-86263756) | |
| 165-269, gnl|hg17|chr2 (84588405-84588555) | |
| 165-269, gnl|Hg17|chr2 (84588534-84588430) | |
| 165-269, gnl|mm7|chr6 (73274232-73274094) | |
| 165-269, gnl|Mm7|chr6 (73274102-73274206) | |
| 165-269, gnl|monDom2|scaffold_68 (8007369-8007519) | |
| 165-269, gnl|oryCun1|scaffold_182075 (10183-10045) | |
| 165-269, gnl|panTro1|chr12 (87452527-87452677) | |
| 165-269, gnl|rheMac2|chr13 (84964419-84964566) | |
| 165-269, gnl|rn3|chr4 (106824358-106824220) | |
| 165-269, gnl|xenTro1|scaffold_465 (474935-474810) | |
| 384-598, gnl|bosTau2|chr11 (37947904-37947690) | |
| 384-598, gnl|canFam2|chr17 (43475409-43475171) | |
| 384-598, gnl|dasNov1|scaffold_5311 (4822-5060) | |
| 384-598, gnl|echTel1|scaffold_324122 (54034-54272) | |
| 384-598, gnl|fr1|chrUn (302517082-302516844) | |
| 384-598, gnl|galGal2|chr4 (86265641-86265411) | |
| 384-598, gnl|hg17|chr2 (84580017-84580255) | |
| 384-598, gnl|Hg17|chr2 (84580243-84580029) | |
| 384-598, gnl|loxAfr1|scaffold_29786 (13816-13581) | |
| 384-598, gnl|mm7|chr6 (73281965-73281727) | |
| 384-598, gnl|Mm7|chr6 (73281737-73281951) | |
| 384-598, gnl|monDom2|scaffold_68 (8000507-8000745) | |
| 384-598, gnl|oryCun1|scaffold_193862 (13743-13981) | |
| 384-598, gnl|panTro1|chr12 (87444157-87444395) | |
| 384-598, gnl|rheMac2|chr13 (84957209-84957447) | |
| 384-598, gnl|rn3|chr4 (106832909-106832671) | |
| 384-598, gnl|tetNig1|chrUn_random (83531605-83531379) | |
| 384-598, gnl|xenTro1|scaffold_465 (477600-477377) | |
| 893-1082, gnl|bosTau2|chr11 (37932293-37932104) | |
| 893-1082, gnl|canFam2|chr17 (43486536-43486400) | |
| 893-1082, gnl|dasNov1|scaffold_34127 (5414-5550) | |
| 893-1082, gnl|echTel1|scaffold_324122 (44147-44280) | |
| 893-1082, gnl|fr1|chrUn (325635771-325635907) | |
| 893-1082, gnl|galGal2|chr4 (86270246-86270116) | |
| 893-1082, gnl|hg17|chr2 (84564190-84564326) | |
| 893-1082, gnl|Hg17|chr2 (84564385-84564196) | |
| 893-1082, gnl|loxAfr1|scaffold_46094 (13247-13384) | |
| 893-1082, gnl|mm7|chr6 (73293329-73293193) | |
| 893-1082, gnl|Mm7|chr6 (73293132-73293321) | |
| 893-1082, gnl|monDom2|scaffold_68 (7988655-7988791) | |
| 893-1082, gnl|oryCun1|scaffold_193862 (1110-1246) | |
| 893-1082, gnl|panTro1|chr12 (87428031-87428167) | |
| 893-1082, gnl|rheMac2|chr13 (84941533-84941669) | |
| 893-1082, gnl|rn3|chr4 (106844432-106844296) | |
| 893-1082, gnl|tetNig1|chrUn_random (83543415-83543282) | |
| 893-1082, gnl|xenTro1|scaffold_465 (487172-487042) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| mas (0.84122) | |
| ssp (0.677599) | |
| hea (0.613497) | |
| jej (0.593531) | |
| fcc (0.593354) | |
| ill (0.526778) | |
| eye (0.511509) | |
| cag (0.453583) | |
| nms (0.427716) | |
| amn (0.417711) | |
| fli (0.405762) | |
| cov (0.396458) | |
| cly (0.361925) | |
| med (0.348756) | |
| cki (0.330469) | |
| nco (0.323468) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| cty (0.20816) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| duo (0.172801) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.84122) | |
| ssp (0.677599) | |
| hea (0.613497) | |
| jej (0.593531) | |
| fcc (0.593354) | |
| ill (0.526778) | |
| eye (0.511509) | |
| cag (0.453583) | |
| nms (0.427716) | |
| amn (0.417711) | |
| fli (0.405762) | |
| cov (0.396458) | |
| cly (0.361925) | |
| med (0.348756) | |
| cki (0.330469) | |
| nco (0.323468) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| cty (0.20816) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| fty (0.17584) | |
| duo (0.172801) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jca (0.11396) |