Ss1.1-Thy1-THY010056A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTCCCCTTCCGCTTCCTCCTGCCTCCTGTCCCGCTGCTGCTGCTGCTCCTCGCTCAG GGCCCCCCTCCAGGCTCTCCACAGCCCCGGTGCCTGCAGAAGCGCTCCGCGCCCCCAGCT GTCACCACCACCGCCTCCCAGGCCTCAGACGCCATGCAGGCCATCAAGTGTGTGGTGGTG GGAGATGGAGCCGTGGGCAAGACCTGCCTTCTCATCAGCTACACCACCAACGCCTTCCCG GGAGAGTACATCCCCACTGTGTTTGACAACTATTCAGCCAATGTGATGGTGGACAGCAAG CCCGTGAACCTGGGGCTGTGGGACACGGCGGGGCAGGAGGACTACGACCGCCTTCGGCCG CTCTCCTACCCGCAGACGGACGTCTTCCTCATCTGCTTCTCTCTTGTCAGCCCAGCCTCC TATGAGAATGTACGAGCCAAGTGGTTCCCCGAGGTGCGGCATCATTGCCCCAGCACGCCC ATCATCCTGGTGGGCACCAAGCTGGACCTGCGGGATGACAAGGACACCATCGAGAAGCTG AAGGAGAAGAAGCTCGCGCCTATTACCTACCCACAGGGCCTGGCGCTGGCCAAGGAGATC GACTCGGTGAAATACCTGGAGTGCTCGGCCCTTACCCAGCGAGGCCTGAAAACCGTCTTT GACGAAGCGATCCGGGCCGTCCTGTGCCCCCAGCCCACGCGGCCGCAGAAACGCCCCTGC AGCATCCTCTAGGGGACGAGCCCAGCCCTTGCAGCCAGATGGTTCTGACCCTCCAGGACC CCCGATGGCACCCTGGCTGTCCCCTCCTTGTGGCGTTTCCCAGCAAGATGGCTGCTGAGC TTGGTCTTCTCCGTGCTAGAGGCCCCCACCCCCGGGGCCCAAGGGGTGTGAATCTGTAGG CGCTGCATCCCCCTCCCCTTGTGCTCCTATCTGGAACCAGAGGGGAACCCTAGGACCTGA TAAGCCGCCCCTGCGTTGCTGTGGTCAGATGCCACACATGGCATTATCTGCCTGTTTACC CCTCTGGAAACTTCGGGCCAGATGGTCGCCGATCACCACTCGTCCACCTTCAGGGACGGG TCTCTCGGTCGACTCTACTGTTGATGATTCTACTTATCTGAGCGTTCTCCTCCTGAGCTG AATTAAGGGTCTCAGAACCTTTACTCCTCTGGTCTTAGTCCTCCTTGGGGGGACAATATA AAATATTTGTTTTCTAAACCTCTATGGACACCTACCCAGCCAATTGAAAAGCTGGGTCCA GCTGACTCCTGCCATCTCTTGTCTTTCTGCTCCACTCACAGGATCCTGAGCTGCATTTAC CTGTGAGGGTCTTAAAACTTTCAGCCCTTGCCAGTCAGGACTATGCCATTGCCCACAGAA ATCCAATTCAACCTGCTTAAGCAGAAAATAAATTTATTAATTCAAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTCCCCTTCCGCTTCCTCCTGCCTCCTGTCCCGCTGCTGCTGCTGCTCCTCGCTCAG GGCCCCCCTCCAGGCTCTCCACAGCCCCGGTGCCTGCAGAAGCGCTCCGCGCCCCCAGCT GTCACCACCACCGCCTCCCAGGCCTCAGACGCCATGCAGGCCATCAAGTGTGTGGTGGTG GGAGATGGAGCCGTGGGCAAGACCTGCCTTCTCATCAGCTACACCACCAACGCCTTCCCG GGAGAGTACATCCCCACTGTGTTTGACAACTATTCAGCCAATGTGATGGTGGACAGCAAG CCCGTGAACCTGGGGCTGTGGGACACGGCGGGGCAGGAGGACTACGACCGCCTTCGGCCG CTCTCCTACCCGCAGACGGACGTCTTCCTCATCTGCTTCTCTCTTGTCAGCCCAGCCTCC TATGAGAATGTACGAGCCAAGTGGTTCCCCGAGGTGCGGCATCATTGCCCCAGCACGCCC ATCATCCTGGTGGGCACCAAGCTGGACCTGCGGGATGACAAGGACACCATCGAGAAGCTG AAGGAGAAGAAGCTCGCGCCTATTACCTACCCACAGGGCCTGGCGCTGGCCAAGGAGATC GACTCGGTGAAATACCTGGAGTGCTCGGCCCTTACCCAGCGAGGCCTGAAAACCGTCTTT GACGAAGCGATCCGGGCCGTCCTGTGCCCCCAGCCCACGCGGCCGCAGAAACGCCCCTGC AGCATCCTCTAGGGGACGAGCCCAGCCCTTGCAGCCAGATGGTTCTGACCCTCCAGGACC CCCGATGGCACCCTGGCTGTCCCCTCCTTGTGGCGTTTCCCAGCAAGATGGCTGCTGAGC TTGGTCTTCTCCGTGCTAGAGGCCCCCACCCCCGGGGCCCAAGGGGTGTGAATCTGTAGG CGCTGCATCCCCCTCCCCTTGTGCTCCTATCTGGAACCAGAGGGGAACCCTAGGACCTGA TAAGCCGCCCCTGCGTTGCTGTGGTCAGATGCCACACATGGCATTATCTGCCTGTTTACC CCTCTGGAAACTTCGGGCCAGATGGTCGCCGATCACCACTCGTCCACCTTCAGGGACGGG TCTCTCGGTCGACTCTACTGTTGATGATTCTACTTATCTGAGCGTTCTCCTCCTGAGCTG AATTAAGGGTCTCAGAACCTTTACTCCTCTGGTCTTAGTCCTCCTTGGGGGGACAATATA AAATATTTGTTTTCTAAACCTCTATGGACACCTACCCAGCCAATTGAAAAGCTGGGTCCA GCTGACTCCTGCCATCTCTTGTCTTTCTGCTCCACTCACAGGATCCTGAGCTGCATTTAC CTGTGAGGGTCTTAAAACTTTCAGCCCTTGCCAGTCAGGACTATGCCATTGCCCACAGAA ATCCAATTCAACCTGCTTAAGCAGAAAATAAATTTATTAATTCAAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 482-601, - strand, RNAz p=0.94054 | |
| 845-959, - strand, RNAz p=0.989736 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 482-601, - strand, RNAz p=0.94054 | |
| 845-959, - strand, RNAz p=0.989736 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 129-695, gnl|bosTau2|chr15 (32927027-32926463) | |
| 129-695, gnl|Hg17|chr11 (3805975-3805403) | |
| 129-695, gnl|Mm7|chr7 (98286375-98285802) | |
| 172-684, gnl|bosTau2|chr11 (61538122-61538634) | |
| 172-684, gnl|Hg17|chr2 (20568879-20569391) | |
| 172-684, gnl|Mm7|chr12 (8525641-8525129) | |
| 335-518, gnl|bosTau2|chr10 (25687773-25687590) | |
| 335-518, gnl|canFam2|chr30 (10993324-10993618) | |
| 335-518, gnl|danRer3|chr20 (38421425-38421716) | |
| 335-518, gnl|dasNov1|scaffold_66857 (43468-43758) | |
| 335-518, gnl|echTel1|scaffold_226257 (8651-8944) | |
| 335-518, gnl|fr1|chrUn (156719299-156719009) | |
| 335-518, gnl|galGal2|chr5 (21551018-21551309) | |
| 335-518, gnl|hg17|chr15 (38952701-38952995) | |
| 335-518, gnl|Hg17|chr15 (38952993-38952810) | |
| 335-518, gnl|loxAfr1|scaffold_3260 (42381-42090) | |
| 335-518, gnl|mm7|chr2 (119011046-119011340) | |
| 335-518, gnl|Mm7|chr2 (119011338-119011155) | |
| 335-518, gnl|monDom2|scaffold_12 (1279750-1279456) | |
| 335-518, gnl|oryCun1|scaffold_210939 (3903-4197) | |
| 335-518, gnl|panTro1|chr16 (38872986-38873280) | |
| 335-518, gnl|rheMac2|chr7 (19263962-19264256) | |
| 335-518, gnl|rn3|chr3 (105684506-105684800) | |
| 335-518, gnl|tetNig1|chr14 (6664321-6664611) | |
| 335-518, gnl|xenTro1|scaffold_852 (187203-187494) | |
| 773-1024, gnl|bosTau2|chr5 (45758371-45758110) | |
| 773-1024, gnl|canFam2|chr10 (30384172-30383747) | |
| 773-1024, gnl|echTel1|scaffold_262732 (7740-7337) | |
| 773-1024, gnl|hg17|chr22 (35946144-35946609) | |
| 773-1024, gnl|Hg17|chr22 (35946520-35946257) | |
| 773-1024, gnl|loxAfr1|scaffold_7581 (43674-43226) | |
| 773-1024, gnl|mm7|chr15 (78644110-78644466) | |
| 773-1024, gnl|Mm7|chr15 (78644379-78644163) | |
| 773-1024, gnl|monDom2|scaffold_34 (968475-968026) | |
| 773-1024, gnl|panTro1|chr23 (36107379-36107844) | |
| 773-1024, gnl|rheMac2|chr10 (81125512-81125977) | |
| 773-1024, gnl|rn3|chr7 (116554585-116554949) | |
| 1092-1426, gnl|bosTau2|chr5 (45757996-45757655) | |
| 1092-1426, gnl|Hg17|chr22 (35946150-35945809) | |
| 1092-1426, gnl|Mm7|chr15 (78644108-78643803) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-695, gnl|bosTau2|chr15 (32927027-32926463) | |
| 129-695, gnl|Hg17|chr11 (3805975-3805403) | |
| 129-695, gnl|Mm7|chr7 (98286375-98285802) | |
| 172-684, gnl|bosTau2|chr11 (61538122-61538634) | |
| 172-684, gnl|Hg17|chr2 (20568879-20569391) | |
| 172-684, gnl|Mm7|chr12 (8525641-8525129) | |
| 335-518, gnl|bosTau2|chr10 (25687773-25687590) | |
| 335-518, gnl|canFam2|chr30 (10993324-10993618) | |
| 335-518, gnl|danRer3|chr20 (38421425-38421716) | |
| 335-518, gnl|dasNov1|scaffold_66857 (43468-43758) | |
| 335-518, gnl|echTel1|scaffold_226257 (8651-8944) | |
| 335-518, gnl|fr1|chrUn (156719299-156719009) | |
| 335-518, gnl|galGal2|chr5 (21551018-21551309) | |
| 335-518, gnl|hg17|chr15 (38952701-38952995) | |
| 335-518, gnl|Hg17|chr15 (38952993-38952810) | |
| 335-518, gnl|loxAfr1|scaffold_3260 (42381-42090) | |
| 335-518, gnl|mm7|chr2 (119011046-119011340) | |
| 335-518, gnl|Mm7|chr2 (119011338-119011155) | |
| 335-518, gnl|monDom2|scaffold_12 (1279750-1279456) | |
| 335-518, gnl|oryCun1|scaffold_210939 (3903-4197) | |
| 335-518, gnl|panTro1|chr16 (38872986-38873280) | |
| 335-518, gnl|rheMac2|chr7 (19263962-19264256) | |
| 335-518, gnl|rn3|chr3 (105684506-105684800) | |
| 335-518, gnl|tetNig1|chr14 (6664321-6664611) | |
| 335-518, gnl|xenTro1|scaffold_852 (187203-187494) | |
| 773-1024, gnl|bosTau2|chr5 (45758371-45758110) | |
| 773-1024, gnl|canFam2|chr10 (30384172-30383747) | |
| 773-1024, gnl|echTel1|scaffold_262732 (7740-7337) | |
| 773-1024, gnl|hg17|chr22 (35946144-35946609) | |
| 773-1024, gnl|Hg17|chr22 (35946520-35946257) | |
| 773-1024, gnl|loxAfr1|scaffold_7581 (43674-43226) | |
| 773-1024, gnl|mm7|chr15 (78644110-78644466) | |
| 773-1024, gnl|Mm7|chr15 (78644379-78644163) | |
| 773-1024, gnl|monDom2|scaffold_34 (968475-968026) | |
| 773-1024, gnl|panTro1|chr23 (36107379-36107844) | |
| 773-1024, gnl|rheMac2|chr10 (81125512-81125977) | |
| 773-1024, gnl|rn3|chr7 (116554585-116554949) | |
| 1092-1426, gnl|bosTau2|chr5 (45757996-45757655) | |
| 1092-1426, gnl|Hg17|chr22 (35946150-35945809) | |
| 1092-1426, gnl|Mm7|chr15 (78644108-78643803) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| csp (1.61186) | |
| cag (1.36075) | |
| ill (1.22915) | |
| cly (1.20642) | |
| med (0.813764) | |
| duo (0.691204) | |
| col (0.585023) | |
| fty (0.527519) | |
| cty (0.5204) | |
| jej (0.395687) | |
| nbm (0.297974) | |
| cbl (0.229595) | |
| nco (0.161734) | |
| cli (0.152812) | |
| che (0.136314) | |
| ute (0.132784) | |
| clu (0.119646) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (1.61186) | |
| cag (1.36075) | |
| ill (1.22915) | |
| cly (1.20642) | |
| med (0.813764) | |
| duo (0.691204) | |
| col (0.585023) | |
| fty (0.527519) | |
| cty (0.5204) | |
| jej (0.395687) | |
| nbm (0.297974) | |
| cbl (0.229595) | |
| nco (0.161734) | |
| cli (0.152812) | |
| che (0.136314) | |
| ute (0.132784) | |
| clu (0.119646) |