Non-Coding RNA Search

Ss1.1-Thy1-THY010056A06.5

Sequence:


               
               CAGCCTTCATTCGATCTCAGGTCTCTTTCATTTTATTTGGAGAGTATATCACACATCCAC
TGTAGCCCCCCCCCCCCCCCCATGGCTCTCTTCAGGTATTAGTGCTGAAAAAGAGCTGCA
TTCTGTGGGCCCCTGGCCTCTGGCGGCCCGCCACGCCCTCCTCCTCTTTCATCCGGTCTC
TCCTGTGTGCGCAGAGCTCTGCGGTAATATTGTTGGGCAGGCCTTCCTAGGTACCTCAGA
AACTACTTTGCCAGTAAAATGTATAAAGTTGGGACGATTGCCAGGATATAAATTAGGTGT
AGATTCCAGTTTAGAGTTTTACTGAGAGCGTTTTAGACAGGATGCCTTTATCTTCCCTGT
CTAGTTGCTCCCCTTGTAGTCCTATAGAGTAAAACCTTTATTCCTTTGGTTTTTTTAAAA
GCCTGCTTCTGTTTGCCTGAATCCTTTGATCTTATTTATCTCATCCTGGGCCTGTCCTAC
GTTACTAAGGCATTTCATAATTACTTATAACTTTTTAGACTACTGGAGTCATTTGATATA
TACAGAAGTAACGTAATAATCCAAAGATAGACACTGAGACGCATGAGGAAGGCTGGCACA
TCAGCCTTTGTGTTTGATAGTCTTTCTCTTCTAGGCTCCAGAATTAGGGAGCAGAGAGAC
AGCAGTGCCACTTGCCTTCCCAGTGTCCTGGGAAATCTGGGTTGGTTTCAAAGGGGAACA
CCAGTAATTCTGGGTTCCAGAAAGTAGCACAGGAGTAGGTGGGGAAATCGGGGCGGGGCG
AGCAAGGCCTGCAAGGAAGCTCATTTGCAGGCGGCTGGAAAGTGTGGTGCCAAAAGGGCC
AGCTGCTGACTAACAGACTAACAACTGTTTGGAGGTCTCGCTGCCCCGTCCCTTGTTCTG
TGCTTGAGAAAAATGTGGCTGACCACTCCCTCTGTTTGTAGAGAGCAGAGGCTGAGAGCC
ATCCCCAGATGCTCTATTAACTTGGCAGCTGAACAAATCGGCAGAGTTCTGATTGCCCGT
CCCCCTATTCTTGATTCAGTCCCCAGACTGAATGTGAGAGGTGCAAGGCCTCCACAGGTT
CTCCTTCTGCCCCGGAACCAGTTTGAGAGGCCAGGGGAGCACTGCTGAGGGCCCACTCTC
TCAGCCTCCTCAGGCTGGTGCCGCCTCCCTGCTCGGCCCAGGCCGGGAGCGGGGTGACTG
TGCGTCCACACCCGCACTCTGACATGTGTGCTGACGCGTTCCCTTTGTGTTGGTTCCCTC
CTCCTTACCTACCTCTGACCCTGTTGTGGGTGAGGGTAGCCAAGCTATGGCTGTCTGGAA
ACTGAAGAGGCAGAGAGCACGTTTTCTCTTCCTTGGCTTCTTCCTTCTGCTGTCTGGGTG
TGTGAGCCCATGGGCGCAGTGCCCGTGAGAGTGGATGCCTCCTGACCTGCCTTTCTCAGC
ACTGTTGTAGTATCTTGGCCTTGACCTCCTGCTGAAACTTGTGACAGGGGCATGGCAGCT
ATGAGGTACCTCCTACATCTGCTTTCTGGCTGTGGTGACTTGGGATTTTTAACCTTATAT
ATCATTTTCCTTTATTCAAAACAAAACAATTTTTAGCACACTGAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTTCATTCGATCTCAGGTCTCTTTCATTTTATTTGGAGAGTATATCACACATCCAC
TGTAGCCCCCCCCCCCCCCCCATGGCTCTCTTCAGGTATTAGTGCTGAAAAAGAGCTGCA
TTCTGTGGGCCCCTGGCCTCTGGCGGCCCGCCACGCCCTCCTCCTCTTTCATCCGGTCTC
TCCTGTGTGCGCAGAGCTCTGCGGTAATATTGTTGGGCAGGCCTTCCTAGGTACCTCAGA
AACTACTTTGCCAGTAAAATGTATAAAGTTGGGACGATTGCCAGGATATAAATTAGGTGT
AGATTCCAGTTTAGAGTTTTACTGAGAGCGTTTTAGACAGGATGCCTTTATCTTCCCTGT
CTAGTTGCTCCCCTTGTAGTCCTATAGAGTAAAACCTTTATTCCTTTGGTTTTTTTAAAA
GCCTGCTTCTGTTTGCCTGAATCCTTTGATCTTATTTATCTCATCCTGGGCCTGTCCTAC
GTTACTAAGGCATTTCATAATTACTTATAACTTTTTAGACTACTGGAGTCATTTGATATA
TACAGAAGTAACGTAATAATCCAAAGATAGACACTGAGACGCATGAGGAAGGCTGGCACA
TCAGCCTTTGTGTTTGATAGTCTTTCTCTTCTAGGCTCCAGAATTAGGGAGCAGAGAGAC
AGCAGTGCCACTTGCCTTCCCAGTGTCCTGGGAAATCTGGGTTGGTTTCAAAGGGGAACA
CCAGTAATTCTGGGTTCCAGAAAGTAGCACAGGAGTAGGTGGGGAAATCGGGGCGGGGCG
AGCAAGGCCTGCAAGGAAGCTCATTTGCAGGCGGCTGGAAAGTGTGGTGCCAAAAGGGCC
AGCTGCTGACTAACAGACTAACAACTGTTTGGAGGTCTCGCTGCCCCGTCCCTTGTTCTG
TGCTTGAGAAAAATGTGGCTGACCACTCCCTCTGTTTGTAGAGAGCAGAGGCTGAGAGCC
ATCCCCAGATGCTCTATTAACTTGGCAGCTGAACAAATCGGCAGAGTTCTGATTGCCCGT
CCCCCTATTCTTGATTCAGTCCCCAGACTGAATGTGAGAGGTGCAAGGCCTCCACAGGTT
CTCCTTCTGCCCCGGAACCAGTTTGAGAGGCCAGGGGAGCACTGCTGAGGGCCCACTCTC
TCAGCCTCCTCAGGCTGGTGCCGCCTCCCTGCTCGGCCCAGGCCGGGAGCGGGGTGACTG
TGCGTCCACACCCGCACTCTGACATGTGTGCTGACGCGTTCCCTTTGTGTTGGTTCCCTC
CTCCTTACCTACCTCTGACCCTGTTGTGGGTGAGGGTAGCCAAGCTATGGCTGTCTGGAA
ACTGAAGAGGCAGAGAGCACGTTTTCTCTTCCTTGGCTTCTTCCTTCTGCTGTCTGGGTG
TGTGAGCCCATGGGCGCAGTGCCCGTGAGAGTGGATGCCTCCTGACCTGCCTTTCTCAGC
ACTGTTGTAGTATCTTGGCCTTGACCTCCTGCTGAAACTTGTGACAGGGGCATGGCAGCT
ATGAGGTACCTCCTACATCTGCTTTCTGGCTGTGGTGACTTGGGATTTTTAACCTTATAT
ATCATTTTCCTTTATTCAAAACAAAACAATTTTTAGCACACTGAGAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1620, gnl|bosTau2|chr15 (14388177-14389767)
               

               
               2-1620, gnl|Hg17|chr11 (118681253-118682875)
               

               
               2-1620, gnl|Mm7|chr9 (44080089-44078403)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1620, gnl|bosTau2|chr15 (14388177-14389767)
               

               
               2-1620, gnl|Hg17|chr11 (118681253-118682875)
               

               
               2-1620, gnl|Mm7|chr9 (44080089-44078403)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	2-1620, gnl\|bosTau2\|chr15 (14388177-14389767)
	2-1620, gnl\|Hg17\|chr11 (118681253-118682875)
	2-1620, gnl\|Mm7\|chr9 (44080089-44078403)

	elu (0.385356)
	cbl (0.344392)
	nco (0.161734)
	cst (0.140036)
	jca (0.11396)
	cty (0.10408)