Non-Coding RNA Search

Ss1.1-Thy1-THY010056D02.5

Sequence:


               
               TCCGTCCAGGCCGGAACCCAAGATGGCTGCGCTCTTGTTGAGACATGTTGGCCGTCATTG
CCTCCGTGCCCATCTTAGTCCTCAGCTCTGTATCAGAAATGCTGTTCCTTTGGGAACCAC
AGCCAAAGAAGAGATGGAGAGATTCTGGAATAAGAACCTTGGTTCAAACCGTCCTTTGTC
TCCCCATATCACTATCTACCGCTGGTCTCTTCCTATGGCGATGTCCATTTGCCACCGTGG
CACTGGTATTGCTTTGAGTGCAGGGGTCTCTCTTTTTGGCTTGTCTGCCCTCTTGCTCCC
TGGGAACTTTGAATCTCATTTGGAACTTGTGAAGTCCCTGTGTTTAGGGCCAACACTGAT
CTACACAGCCAAATTTGGGATTGTCTTCCCTCTCATGTATCACACCTGGAATGGGATCCG
ACACTTGATTTGGGACCTAGGAAAAGGCCTGACGATTCCCCAGCTAACCCAGTCTGGAGT
GGTTGTCTTGATTCTTACTGTGTTGTCCTCTGTAGGGCTGGCAGCCATGTGAAGAGCTGA
GTTCCCAACATCATCGTCCTGCAAATTACTACATTGATTTATCTTCCTATTTGTTGCTGT
TATCTTCAGCCAGGGCAAAGCTCTGACCCTTTTGTGCTTGCAGACCCTGTTGGAGCTCAG
CAGTAGAGTACGTTATAGAACCATAGTAGTGGAAAAGTGTCCACTTTTCCCCTTATTTTT
AAAGATAGAATGACTGCAAAAACTCCCTTTTCCTGCCCCCAGCTTGCAGCCTACTCTAGG
CCTGGGAGCCCTCATTCTCTCTCCATATTGGGCCTTGATTTATGCTGAGGGTCAGCTTTT
GGCTCCTTTTTCCTGAGACAGTAGAAACAATGCCAGCTCTGTGGCCCCTGCCATGGGGAC
TGGGAGTGGGGGCTTTGGGTGCCACTGCCTGTGGGTTGCTGGCTTAAAGGACAATTCTGT
TCATTGGTCAGAGCCCAGGGTCTTTAGCACCCACACAGTGTGACTGAAAGGAGAGGGGTG
GGGTGGAGGGGAATTAGCTTGTTCTGGCTGGAGTGAGATAAAGAGGGTAAGTTGGCTCAT
GGAGCAGGTGCTGTGGGGAGAAGATGTATATAGCTTTTGATGCAAGAGGAAGATCTGGAA
AATGGTGGTTGAACCTATTAAGGGTCATTTCTCTTCTTTACATTTCCAGAAAAACCAAGC
CTCATATGTTTTCTAATCCAAATTCATGTGACAGCTTTTTCTGACAGTGAATTAAAATTA
TCATTTTGTCTTTGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGTCCAGGCCGGAACCCAAGATGGCTGCGCTCTTGTTGAGACATGTTGGCCGTCATTG
CCTCCGTGCCCATCTTAGTCCTCAGCTCTGTATCAGAAATGCTGTTCCTTTGGGAACCAC
AGCCAAAGAAGAGATGGAGAGATTCTGGAATAAGAACCTTGGTTCAAACCGTCCTTTGTC
TCCCCATATCACTATCTACCGCTGGTCTCTTCCTATGGCGATGTCCATTTGCCACCGTGG
CACTGGTATTGCTTTGAGTGCAGGGGTCTCTCTTTTTGGCTTGTCTGCCCTCTTGCTCCC
TGGGAACTTTGAATCTCATTTGGAACTTGTGAAGTCCCTGTGTTTAGGGCCAACACTGAT
CTACACAGCCAAATTTGGGATTGTCTTCCCTCTCATGTATCACACCTGGAATGGGATCCG
ACACTTGATTTGGGACCTAGGAAAAGGCCTGACGATTCCCCAGCTAACCCAGTCTGGAGT
GGTTGTCTTGATTCTTACTGTGTTGTCCTCTGTAGGGCTGGCAGCCATGTGAAGAGCTGA
GTTCCCAACATCATCGTCCTGCAAATTACTACATTGATTTATCTTCCTATTTGTTGCTGT
TATCTTCAGCCAGGGCAAAGCTCTGACCCTTTTGTGCTTGCAGACCCTGTTGGAGCTCAG
CAGTAGAGTACGTTATAGAACCATAGTAGTGGAAAAGTGTCCACTTTTCCCCTTATTTTT
AAAGATAGAATGACTGCAAAAACTCCCTTTTCCTGCCCCCAGCTTGCAGCCTACTCTAGG
CCTGGGAGCCCTCATTCTCTCTCCATATTGGGCCTTGATTTATGCTGAGGGTCAGCTTTT
GGCTCCTTTTTCCTGAGACAGTAGAAACAATGCCAGCTCTGTGGCCCCTGCCATGGGGAC
TGGGAGTGGGGGCTTTGGGTGCCACTGCCTGTGGGTTGCTGGCTTAAAGGACAATTCTGT
TCATTGGTCAGAGCCCAGGGTCTTTAGCACCCACACAGTGTGACTGAAAGGAGAGGGGTG
GGGTGGAGGGGAATTAGCTTGTTCTGGCTGGAGTGAGATAAAGAGGGTAAGTTGGCTCAT
GGAGCAGGTGCTGTGGGGAGAAGATGTATATAGCTTTTGATGCAAGAGGAAGATCTGGAA
AATGGTGGTTGAACCTATTAAGGGTCATTTCTCTTCTTTACATTTCCAGAAAAACCAAGC
CTCATATGTTTTCTAATCCAAATTCATGTGACAGCTTTTTCTGACAGTGAATTAAAATTA
TCATTTTGTCTTTGAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5VTH3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VTH3_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1295, gnl|bosTau2|chr2 (68027045-68028355)
               

               
               1-1295, gnl|Hg17|chr10 (93868382-93869649)
               

               
               1-1295, gnl|Mm7|chr1 (171115915-171099271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1295, gnl|bosTau2|chr2 (68027045-68028355)
               

               
               1-1295, gnl|Hg17|chr10 (93868382-93869649)
               

               
               1-1295, gnl|Mm7|chr1 (171115915-171099271)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               cki (1.15664)
               

               
               eli (0.607257)
               

               
               cbr (0.511902)
               

               
               hlv (0.417769)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               clu (0.239292)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (1.15664)
               

               
               eli (0.607257)
               

               
               cbr (0.511902)
               

               
               hlv (0.417769)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               clu (0.239292)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	1-1295, gnl\|bosTau2\|chr2 (68027045-68028355)
	1-1295, gnl\|Hg17\|chr10 (93868382-93869649)
	1-1295, gnl\|Mm7\|chr1 (171115915-171099271)

	cki (1.15664)
	eli (0.607257)
	cbr (0.511902)
	hlv (0.417769)
	eje (0.395335)
	elu (0.385356)
	sto (0.359648)
	nje (0.33184)
	cje (0.330469)
	cty (0.31224)
	jej (0.296765)
	ldo (0.291008)
	fce (0.271592)
	nmm (0.265604)
	cov (0.264306)
	clu (0.239292)
	nms (0.213858)
	mas (0.210305)
	cmu (0.186393)
	ton (0.1755)
	csp (0.161186)
	cli (0.152812)
	bfe (0.149858)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)