Ss1.1-Thy1-THY010056G01.5
|
TTTGTTAACCAGAGAGGGCGCGGCCACCGGGATTCTCGCTGCAGGCTTCGGGGAGCGGCG
CTTGGCTTCCAGATTGGGGTCGAGATGTCCTACATTCCGGGCCAGCCGGTCACCGCCGTG
GTGCAAAGAGTTGAAATTCATAAGCTGCGTCAAGGTGAGAACTTAATCCTGGGCTTCAGC
ATTGGAGGTGGAATTGACCAGGATCCCTCTCAGAATCCTTTCTCAGAAGATAAGACAGAC
AAGGGCATTTATGTCACGCGGGTATCTGAAGGAGGCCCAGCGGAAATTGCCGGGCTGCAG
ATCGGGGACAAGATCATGCAGGTGAACGGCTGGGACATGACCATGGTCACGCACGACCAG
GCCCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGTGCGGCTGCTGGTGACGCGGCAG
TCGCTGCAGAAGGCGGTGCAGCAGTCCATGCTGTCCTAGCAGCTGCCAAGGTCCCTGCCC
GCCTGCCCGCCTCTGTGCAGTGACACCACCTCCACGCTCTGTCTGTCCCTTGTCCTGGCT
TCTGATGGCTGGGCCCCGACTCGGAGCGGCAAGAGCTGGTCCCAGGGGCCTGACCCAGCC
TTCCTTCTCTCCCACCACGGGCCCGAGCTCTTTCCCTTGGACACAGGATTAGCAACGAGG
GCCTGGAGCCCAGTTTGAATCAGTCTATGATGACCACAGACTCAGCCCCCAAACCCTGCT
GCTTGGCCACAACCGTGCCCAGGCGAGGAGCCCTCCCACCCCCCACTACTTGAGGGCACC
ACACCGCTGGGAAACTCAGGGGCATGGTCCTGCCCCTGCCCCGTGTCTCAGCCCTACAGT
GCCTGTGCCCCGTGCCCTGTGCCCCACACCCCCTGCCACGTTCCCCAGTGAGGACCGACT
CACACTGCCAGAGACACTACCAAGGTTTGCCCGGACAGAAGCCAGGCAGGCTCACTGCTC
ACCCATCGCACCCCAACCAAGGGGCGCTGGCCTCCTTGGGGTTCACCTGCTTACAGGAAT
TAGATGAGGTTCGAGGCTGACATTTCAGGGCAGTTCTCAGGATTGCCATTTTCCTCTATG
CCCGTGGGTTTAACTTTTGTATTTTTTTAGTCACAACTTTGATACAAAGCGTTTTTATCT
TACTCTTTGGAGATGCCAGTTCAACTTTTGAATTTAGCTTACTAATTCATATCTGGGAAC
TACATTTAATAAGGGAACCAGCCTTACTTCGGTTACTGTGGAAATGGGGCAGCAAGAAGC
TGCCCCCCATATTGTGCCCAATAAACAGTACTGGATTCACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGTTAACCAGAGAGGGCGCGGCCACCGGGATTCTCGCTGCAGGCTTCGGGGAGCGGCG
CTTGGCTTCCAGATTGGGGTCGAGATGTCCTACATTCCGGGCCAGCCGGTCACCGCCGTG
GTGCAAAGAGTTGAAATTCATAAGCTGCGTCAAGGTGAGAACTTAATCCTGGGCTTCAGC
ATTGGAGGTGGAATTGACCAGGATCCCTCTCAGAATCCTTTCTCAGAAGATAAGACAGAC
AAGGGCATTTATGTCACGCGGGTATCTGAAGGAGGCCCAGCGGAAATTGCCGGGCTGCAG
ATCGGGGACAAGATCATGCAGGTGAACGGCTGGGACATGACCATGGTCACGCACGACCAG
GCCCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGTGCGGCTGCTGGTGACGCGGCAG
TCGCTGCAGAAGGCGGTGCAGCAGTCCATGCTGTCCTAGCAGCTGCCAAGGTCCCTGCCC
GCCTGCCCGCCTCTGTGCAGTGACACCACCTCCACGCTCTGTCTGTCCCTTGTCCTGGCT
TCTGATGGCTGGGCCCCGACTCGGAGCGGCAAGAGCTGGTCCCAGGGGCCTGACCCAGCC
TTCCTTCTCTCCCACCACGGGCCCGAGCTCTTTCCCTTGGACACAGGATTAGCAACGAGG
GCCTGGAGCCCAGTTTGAATCAGTCTATGATGACCACAGACTCAGCCCCCAAACCCTGCT
GCTTGGCCACAACCGTGCCCAGGCGAGGAGCCCTCCCACCCCCCACTACTTGAGGGCACC
ACACCGCTGGGAAACTCAGGGGCATGGTCCTGCCCCTGCCCCGTGTCTCAGCCCTACAGT
GCCTGTGCCCCGTGCCCTGTGCCCCACACCCCCTGCCACGTTCCCCAGTGAGGACCGACT
CACACTGCCAGAGACACTACCAAGGTTTGCCCGGACAGAAGCCAGGCAGGCTCACTGCTC
ACCCATCGCACCCCAACCAAGGGGCGCTGGCCTCCTTGGGGTTCACCTGCTTACAGGAAT
TAGATGAGGTTCGAGGCTGACATTTCAGGGCAGTTCTCAGGATTGCCATTTTCCTCTATG
CCCGTGGGTTTAACTTTTGTATTTTTTTAGTCACAACTTTGATACAAAGCGTTTTTATCT
TACTCTTTGGAGATGCCAGTTCAACTTTTGAATTTAGCTTACTAATTCATATCTGGGAAC
TACATTTAATAAGGGAACCAGCCTTACTTCGGTTACTGTGGAAATGGGGCAGCAAGAAGC
TGCCCCCCATATTGTGCCCAATAAACAGTACTGGATTCACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
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gi|34872729|ref|XP_340842.1| |
Protein identifier
|
gi|34872729|ref|XP_340842.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
123-244, gnl|bosTau2|chr19 (18932100-18931979) |
|
123-244, gnl|canFam2|chr9 (50821282-50821437) |
|
123-244, gnl|danRer3|chr11 (3568738-3568893) |
|
123-244, gnl|dasNov1|scaffold_53766 (2165-2012) |
|
123-244, gnl|echTel1|scaffold_309910 (44767-44931) |
|
123-244, gnl|fr1|chrUn (301220987-301221134) |
|
123-244, gnl|galGal2|chr19 (6214397-6214249) |
|
123-244, gnl|hg17|chr17 (3514710-3514865) |
|
123-244, gnl|Hg17|chr17 (3514842-3514721) |
|
123-244, gnl|loxAfr1|scaffold_1534 (41524-41366) |
|
123-244, gnl|mm7|chr11 (73262092-73261939) |
|
123-244, gnl|Mm7|chr11 (73261962-73262083) |
|
123-244, gnl|oryCun1|scaffold_205827 (45064-44911) |
|
123-244, gnl|panTro1|chr19 (3811983-3812138) |
|
123-244, gnl|rheMac2|chr16 (3392750-3392907) |
|
123-244, gnl|rn3|chr10 (60070686-60070534) |
|
123-244, gnl|tetNig1|chr1 (10642559-10642426) |
|
123-244, gnl|xenTro1|scaffold_403 (923580-923735) |
| |
|
319-1299, gnl|bosTau2|chr19 (18931218-18930250) |
|
319-1299, gnl|Hg17|chr17 (3513931-3512938) |
|
319-1299, gnl|Mm7|chr11 (73262659-73263617) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
123-244, gnl|bosTau2|chr19 (18932100-18931979) |
|
123-244, gnl|canFam2|chr9 (50821282-50821437) |
|
123-244, gnl|danRer3|chr11 (3568738-3568893) |
|
123-244, gnl|dasNov1|scaffold_53766 (2165-2012) |
|
123-244, gnl|echTel1|scaffold_309910 (44767-44931) |
|
123-244, gnl|fr1|chrUn (301220987-301221134) |
|
123-244, gnl|galGal2|chr19 (6214397-6214249) |
|
123-244, gnl|hg17|chr17 (3514710-3514865) |
|
123-244, gnl|Hg17|chr17 (3514842-3514721) |
|
123-244, gnl|loxAfr1|scaffold_1534 (41524-41366) |
|
123-244, gnl|mm7|chr11 (73262092-73261939) |
|
123-244, gnl|Mm7|chr11 (73261962-73262083) |
|
123-244, gnl|oryCun1|scaffold_205827 (45064-44911) |
|
123-244, gnl|panTro1|chr19 (3811983-3812138) |
|
123-244, gnl|rheMac2|chr16 (3392750-3392907) |
|
123-244, gnl|rn3|chr10 (60070686-60070534) |
|
123-244, gnl|tetNig1|chr1 (10642559-10642426) |
|
123-244, gnl|xenTro1|scaffold_403 (923580-923735) |
| |
|
319-1299, gnl|bosTau2|chr19 (18931218-18930250) |
|
319-1299, gnl|Hg17|chr17 (3513931-3512938) |
|
319-1299, gnl|Mm7|chr11 (73262659-73263617) |
|
eep (0.490256) |
|
nlu (0.383362) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
eru (0.240096) |
|
jej (0.197844) |
|
eje (0.197668) |
|
fty (0.17584) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
pty (0.142714) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ova (0.129132) |
|
ese (0.126502) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
eep (0.490256) |
|
nlu (0.383362) |
|
ecc (0.345105) |
|
jca (0.34188) |
|
eru (0.240096) |
|
jej (0.197844) |
|
eje (0.197668) |
|
fty (0.17584) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
pty (0.142714) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ova (0.129132) |
|
ese (0.126502) |
|
cly (0.120642) |
|
ebs (0.118301) |
