Ss1.1-Thy1-THY010056G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCTGCGAGCCGCAGAAGACATGGCGGCGTCTGCGTCGGCAACTGCAGGGGAGGAGGA CTGGGTCCTTCCCTCTGAAGTTGAAGTGTTAGAGTCAATCTACCTGGATGAACTACAGGT GGTTAAAGGAAATAGCAGATCGTCACCGTGGGAGATCTCCATCACCCTGCACCCCGCCAC TGCCGAAGACCAGGATTCGCAGTATGTCTGCTTCACTCTGGTGCTTCAGGTTCCAGCACA GTATCCCCATGAGGTGCCACAGATCTCTATCCGTAACCCCCGAGGACTCTCAGATGAACA GATCCACAAGATCTCACAGGCGCTGAGCCATGTGGCTGAGGCTGGACTGGGTACGGCCAT GCTCTATGAGCTCATCGAGAAAGGGAAGGAAATCCTTACAGATAACAACATCCCCCACGG CCAGTGCGTCATCTGCCTCTATGGTTTCCAGGAGAAGGAAGCCTTTACCAAAACACCCTG TTACCACTACTTCCACTGCCACTGCCTGGCCCGGTACATCCAGCACATGGAGCACGAGCT GCAGGCCCAGGGACGGGAACAGGAACAGCAACGGCAGCACGCCGCAGCTAAACAGAAGGC CGTGGGTGTGCAGTGCCCAGTGTGCAGAGAGCCGCTCGTGTACGATCTCTCACTGAAAGC AGCCCCCGAACCACCCCAACAGCCGGAGCTGTACCACCAACCTGATGCAGAGAGCCTGCG GCAAGCAGAACGCAAGAGGCTGTACCAGAGACAGCAGGAGAGAGGGGGCATCATTGACCT TGAGGCTGAGCGTAACCGGTACTTCATTAGCCTCCAGCAGCCTCCTGCCCCTTTGGAACC TGAGTCAGCTGTAGATGCCTCTAGAGGATCCCACCCACCCAGTGCCCTTGCCACAGAACC ATCCGTCTCATCAACTGCTCAAACCACCCTGTCACCTCCTCTGCCTGTGACCTCCCAGTA CACGTGTGAGAAGATTCCAGGGCTTGGGCCAAATCAGCAAAAGCTGGGCGAGACCCAGAG AGCTATGCCAGAACCCCCCCGGGCCAGTCGAGGCCCCTGGAGACAGGCCGAACGGAGGCA CCTAAAGGGAGGGGAATGCAGTGTCCTCAAAGGTACCATTGACACCCAGGAACTGCCACC TCCTGAGGGGCCCCTCAAGGAGGCCATGGACCTAAAGCCAGAGTCCCGTAACCAAGGGGT GGAAGGTCCTCCTCAGGAGAAGGGGCCTGGCAACTGGCAGGATCCCCCCACCCCGCAGGA CTCGGGACTGTGCTCGCTGGGAGCGCTCCAAGGGTCGGACACCAGCTTCTTCCTACCCCC GCCTGCCCCGGGGAAGGGGAGCCTATCGGCCTGGTACTCGAAGGGAGCCCGTGAGCCTTG AATCTGAAGATGGTTCCTAGCAGTACCTGGAGGGGACAGGGAAGTGGGAGGGGGCAATAA AGAGATTTGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCTGCGAGCCGCAGAAGACATGGCGGCGTCTGCGTCGGCAACTGCAGGGGAGGAGGA CTGGGTCCTTCCCTCTGAAGTTGAAGTGTTAGAGTCAATCTACCTGGATGAACTACAGGT GGTTAAAGGAAATAGCAGATCGTCACCGTGGGAGATCTCCATCACCCTGCACCCCGCCAC TGCCGAAGACCAGGATTCGCAGTATGTCTGCTTCACTCTGGTGCTTCAGGTTCCAGCACA GTATCCCCATGAGGTGCCACAGATCTCTATCCGTAACCCCCGAGGACTCTCAGATGAACA GATCCACAAGATCTCACAGGCGCTGAGCCATGTGGCTGAGGCTGGACTGGGTACGGCCAT GCTCTATGAGCTCATCGAGAAAGGGAAGGAAATCCTTACAGATAACAACATCCCCCACGG CCAGTGCGTCATCTGCCTCTATGGTTTCCAGGAGAAGGAAGCCTTTACCAAAACACCCTG TTACCACTACTTCCACTGCCACTGCCTGGCCCGGTACATCCAGCACATGGAGCACGAGCT GCAGGCCCAGGGACGGGAACAGGAACAGCAACGGCAGCACGCCGCAGCTAAACAGAAGGC CGTGGGTGTGCAGTGCCCAGTGTGCAGAGAGCCGCTCGTGTACGATCTCTCACTGAAAGC AGCCCCCGAACCACCCCAACAGCCGGAGCTGTACCACCAACCTGATGCAGAGAGCCTGCG GCAAGCAGAACGCAAGAGGCTGTACCAGAGACAGCAGGAGAGAGGGGGCATCATTGACCT TGAGGCTGAGCGTAACCGGTACTTCATTAGCCTCCAGCAGCCTCCTGCCCCTTTGGAACC TGAGTCAGCTGTAGATGCCTCTAGAGGATCCCACCCACCCAGTGCCCTTGCCACAGAACC ATCCGTCTCATCAACTGCTCAAACCACCCTGTCACCTCCTCTGCCTGTGACCTCCCAGTA CACGTGTGAGAAGATTCCAGGGCTTGGGCCAAATCAGCAAAAGCTGGGCGAGACCCAGAG AGCTATGCCAGAACCCCCCCGGGCCAGTCGAGGCCCCTGGAGACAGGCCGAACGGAGGCA CCTAAAGGGAGGGGAATGCAGTGTCCTCAAAGGTACCATTGACACCCAGGAACTGCCACC TCCTGAGGGGCCCCTCAAGGAGGCCATGGACCTAAAGCCAGAGTCCCGTAACCAAGGGGT GGAAGGTCCTCCTCAGGAGAAGGGGCCTGGCAACTGGCAGGATCCCCCCACCCCGCAGGA CTCGGGACTGTGCTCGCTGGGAGCGCTCCAAGGGTCGGACACCAGCTTCTTCCTACCCCC GCCTGCCCCGGGGAAGGGGAGCCTATCGGCCTGGTACTCGAAGGGAGCCCGTGAGCCTTG AATCTGAAGATGGTTCCTAGCAGTACCTGGAGGGGACAGGGAAGTGGGAGGGGGCAATAA AGAGATTTGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1058-1257, - strand, RNAz p=0.98241 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1058-1257, - strand, RNAz p=0.98241 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 135-241, gnl|bosTau2|chr2 (59457915-59458021) | |
| 135-241, gnl|Hg17|chr2 (219358573-219358467) | |
| 135-241, gnl|Mm7|chr1 (74838469-74838366) | |
| 446-595, gnl|bosTau2|chr2 (59461430-59461579) | |
| 446-595, gnl|canFam2|chr37 (28268168-28268403) | |
| 446-595, gnl|danRer3|chr3 (27235447-27235660) | |
| 446-595, gnl|echTel1|scaffold_319525 (6882-6665) | |
| 446-595, gnl|fr1|chrUn (146937790-146937525) | |
| 446-595, gnl|galGal2|chr7 (23212776-23212467) | |
| 446-595, gnl|hg17|chr2 (219356142-219356382) | |
| 446-595, gnl|Hg17|chr2 (219356293-219356144) | |
| 446-595, gnl|loxAfr1|scaffold_30510 (29998-30231) | |
| 446-595, gnl|mm7|chr1 (74835302-74835534) | |
| 446-595, gnl|Mm7|chr1 (74835446-74835304) | |
| 446-595, gnl|monDom2|scaffold_39 (1983907-1983670) | |
| 446-595, gnl|oryCun1|scaffold_203163 (77344-77577) | |
| 446-595, gnl|panTro1|chr13 (109515772-109516012) | |
| 446-595, gnl|rheMac2|chr12 (82516184-82516422) | |
| 446-595, gnl|rn3|chr9 (74093214-74093439) | |
| 446-595, gnl|tetNig1|chr3 (14022108-14021842) | |
| 819-1452, gnl|bosTau2|chr2 (59463380-59464016) | |
| 819-1452, gnl|Hg17|chr2 (219354765-219354123) | |
| 819-1452, gnl|Mm7|chr1 (74834077-74833439) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-241, gnl|bosTau2|chr2 (59457915-59458021) | |
| 135-241, gnl|Hg17|chr2 (219358573-219358467) | |
| 135-241, gnl|Mm7|chr1 (74838469-74838366) | |
| 446-595, gnl|bosTau2|chr2 (59461430-59461579) | |
| 446-595, gnl|canFam2|chr37 (28268168-28268403) | |
| 446-595, gnl|danRer3|chr3 (27235447-27235660) | |
| 446-595, gnl|echTel1|scaffold_319525 (6882-6665) | |
| 446-595, gnl|fr1|chrUn (146937790-146937525) | |
| 446-595, gnl|galGal2|chr7 (23212776-23212467) | |
| 446-595, gnl|hg17|chr2 (219356142-219356382) | |
| 446-595, gnl|Hg17|chr2 (219356293-219356144) | |
| 446-595, gnl|loxAfr1|scaffold_30510 (29998-30231) | |
| 446-595, gnl|mm7|chr1 (74835302-74835534) | |
| 446-595, gnl|Mm7|chr1 (74835446-74835304) | |
| 446-595, gnl|monDom2|scaffold_39 (1983907-1983670) | |
| 446-595, gnl|oryCun1|scaffold_203163 (77344-77577) | |
| 446-595, gnl|panTro1|chr13 (109515772-109516012) | |
| 446-595, gnl|rheMac2|chr12 (82516184-82516422) | |
| 446-595, gnl|rn3|chr9 (74093214-74093439) | |
| 446-595, gnl|tetNig1|chr3 (14022108-14021842) | |
| 819-1452, gnl|bosTau2|chr2 (59463380-59464016) | |
| 819-1452, gnl|Hg17|chr2 (219354765-219354123) | |
| 819-1452, gnl|Mm7|chr1 (74834077-74833439) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nep (0.36785) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |