Ss1.1-Thy1-THY010056G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACTCTCCCCCGGCAATATGGCGGACACCGCTCCTCAACCCAGCAAGAGAAAGCGCGAA CGAGACCCGGAGGAGGCGGAGGCACCCAGCACAGAGGAGAAGGAAGCAAGGGTTGGGAAT GGTACCTCTGCTCCTGTCCGCTTACCTTTCTCCGGCTTTAGAGTGAAAAAAGTGCTAAGG GAGTCTGCGCGGGACAAAATCATTTTCCTGCACGGAAAGGTGAATGAGGCTTCTGGGGAT GGAGATGGAGAAGATGCCATTGTGATCCTGGAGAAGACGCCATTTCAGGTGGACCAGGTG GCCCAGCTCCTGATGGGCAGCCCTGAACTCCAGCTGCAGTTCTCCAATGATATCTACAGC ACCTATCACCTCTTCCCTCCAAGGCAGCTGAGTGATGTGAAGACCACGGTGGTTTACCCA GCCACAGAGAAGCACCTGCAAAAGTACCTGCACCAGGACCTCCACCTGGTCCGAGAGACT GGAGGCGATTACAAGAACATCACCTTACCCCATCTGGAGTCCCAGAGCCTCAGCATCCAG TGGGTGTATAATATCCTCGACAAGAAGGCTGAAGCTGACCGGATCGTTTTTGAGAACCCA GATCCCTCTGACGGCTTTGTCCTCATCCCCGACCTCAAGTGGAACCAAAAGCAGCTCGAT GACCTATACCTGATCGCCATCTGCCATCGCCGGGGCATCAAGTCGCTTCGGGACCTTACT CCAGAGCACCTGCCACTGCTCAGGAACATCCTCCGCGAGGGGCAGGAAGCTATCCTGCAG CGCTACCAGGTAACAGGAGACCGCCTCCGTGTGTACCTGCACTACCTGCCCTCCTACTAC CACCTGCACGTGCACTTCACTGCCCTGGGCTTCGAGGCCCCTGGAGCGGGCGTGGAGCGG GCCCACCTGCTGGCGGAGGTGATCGAGAACCTGGAGCAAGACCCGGAGCACTACCAGCGG CGCACCCTCACCTTTGCCCTCAGGGCTGACGACCCGCTGCTCACTCTCTTGCAGGAGGCG CAGCGGAGCTGAGTGTCCACACCCCCTTCCCCCGCTGTCGGGGGAGGAACACTGATGCAG GCGGTGGGGGTGGCAGGATTTTTAGAACCAAGTGAATTTTTTAAAAATATATTTTGTACT GGCTTCTTCTCAGTATGAGAATAAAGTATTGGTCTCATACTGTGTGGACCCACAGCATGG CTGGGGTGGAGGAGTGGGCAGAACCCGGCTCGAGGCTCCTGAGGAGGGGGCCGTGTCTGG GGACTGCCCAGCCGCCCGACCTGGCTAACTTGGCATCCTGAACCCACCCCAGCCCCCCTG CTATCTCCACTTCCCACTCTGCCGCCATGCCCTCTTCCTTCCCACTTTTTGTCTTCCTAA TGGTTTTCTTGCTAATGGTATAACCTGGGAGTTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACTCTCCCCCGGCAATATGGCGGACACCGCTCCTCAACCCAGCAAGAGAAAGCGCGAA CGAGACCCGGAGGAGGCGGAGGCACCCAGCACAGAGGAGAAGGAAGCAAGGGTTGGGAAT GGTACCTCTGCTCCTGTCCGCTTACCTTTCTCCGGCTTTAGAGTGAAAAAAGTGCTAAGG GAGTCTGCGCGGGACAAAATCATTTTCCTGCACGGAAAGGTGAATGAGGCTTCTGGGGAT GGAGATGGAGAAGATGCCATTGTGATCCTGGAGAAGACGCCATTTCAGGTGGACCAGGTG GCCCAGCTCCTGATGGGCAGCCCTGAACTCCAGCTGCAGTTCTCCAATGATATCTACAGC ACCTATCACCTCTTCCCTCCAAGGCAGCTGAGTGATGTGAAGACCACGGTGGTTTACCCA GCCACAGAGAAGCACCTGCAAAAGTACCTGCACCAGGACCTCCACCTGGTCCGAGAGACT GGAGGCGATTACAAGAACATCACCTTACCCCATCTGGAGTCCCAGAGCCTCAGCATCCAG TGGGTGTATAATATCCTCGACAAGAAGGCTGAAGCTGACCGGATCGTTTTTGAGAACCCA GATCCCTCTGACGGCTTTGTCCTCATCCCCGACCTCAAGTGGAACCAAAAGCAGCTCGAT GACCTATACCTGATCGCCATCTGCCATCGCCGGGGCATCAAGTCGCTTCGGGACCTTACT CCAGAGCACCTGCCACTGCTCAGGAACATCCTCCGCGAGGGGCAGGAAGCTATCCTGCAG CGCTACCAGGTAACAGGAGACCGCCTCCGTGTGTACCTGCACTACCTGCCCTCCTACTAC CACCTGCACGTGCACTTCACTGCCCTGGGCTTCGAGGCCCCTGGAGCGGGCGTGGAGCGG GCCCACCTGCTGGCGGAGGTGATCGAGAACCTGGAGCAAGACCCGGAGCACTACCAGCGG CGCACCCTCACCTTTGCCCTCAGGGCTGACGACCCGCTGCTCACTCTCTTGCAGGAGGCG CAGCGGAGCTGAGTGTCCACACCCCCTTCCCCCGCTGTCGGGGGAGGAACACTGATGCAG GCGGTGGGGGTGGCAGGATTTTTAGAACCAAGTGAATTTTTTAAAAATATATTTTGTACT GGCTTCTTCTCAGTATGAGAATAAAGTATTGGTCTCATACTGTGTGGACCCACAGCATGG CTGGGGTGGAGGAGTGGGCAGAACCCGGCTCGAGGCTCCTGAGGAGGGGGCCGTGTCTGG GGACTGCCCAGCCGCCCGACCTGGCTAACTTGGCATCCTGAACCCACCCCAGCCCCCCTG CTATCTCCACTTCCCACTCTGCCGCCATGCCCTCTTCCTTCCCACTTTTTGTCTTCCTAA TGGTTTTCTTGCTAATGGTATAACCTGGGAGTTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 251-369, - strand, RNAz p=0.951458 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 251-369, - strand, RNAz p=0.951458 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 251-403, gnl|bosTau2|chr12 (27412569-27412714) | |
| 251-403, gnl|Hg17|chr5 (171810711-171810862) | |
| 536-654, gnl|bosTau2|chr29 (21728058-21728176) | |
| 536-654, gnl|canFam2|chr5 (11181905-11181770) | |
| 536-654, gnl|danRer3|chr10 (36888775-36888642) | |
| 536-654, gnl|echTel1|scaffold_314527 (5346-5482) | |
| 536-654, gnl|fr1|chrUn (240087160-240087043) | |
| 536-654, gnl|galGal2|chr24 (428185-428316) | |
| 536-654, gnl|hg17|chr11 (125713373-125713507) | |
| 536-654, gnl|Hg17|chr11 (125713386-125713504) | |
| 536-654, gnl|loxAfr1|scaffold_49960 (7340-7478) | |
| 536-654, gnl|mm7|chr9 (35024396-35024262) | |
| 536-654, gnl|Mm7|chr9 (35024381-35024263) | |
| 536-654, gnl|monDom2|scaffold_15 (13278113-13278246) | |
| 536-654, gnl|oryCun1|scaffold_175061 (45684-45817) | |
| 536-654, gnl|panTro1|chr9_random (7137547-7137413) | |
| 536-654, gnl|rheMac2|chr14 (124483736-124483870) | |
| 536-654, gnl|rn3|chr8 (34915959-34915825) | |
| 536-654, gnl|tetNig1|chr1_random (193919-193780) | |
| 763-1033, gnl|bosTau2|chr29 (21734850-21735120) | |
| 763-1033, gnl|canFam2|chr5 (11174283-11174075) | |
| 763-1033, gnl|danRer3|chr10 (36883613-36883425) | |
| 763-1033, gnl|dasNov1|scaffold_60174 (11945-11741) | |
| 763-1033, gnl|fr1|chrUn (240086444-240086247) | |
| 763-1033, gnl|galGal2|chr24 (434318-434515) | |
| 763-1033, gnl|hg17|chr11 (125720426-125720629) | |
| 763-1033, gnl|Hg17|chr11 (125720449-125720719) | |
| 763-1033, gnl|loxAfr1|scaffold_49960 (14172-14381) | |
| 763-1033, gnl|mm7|chr9 (35019679-35019471) | |
| 763-1033, gnl|Mm7|chr9 (35019649-35019383) | |
| 763-1033, gnl|monDom2|scaffold_15 (13286895-13287086) | |
| 763-1033, gnl|oryCun1|scaffold_201011 (79388-79597) | |
| 763-1033, gnl|panTro1|chr9 (127804623-127804826) | |
| 763-1033, gnl|rn3|chr8 (34911371-34911162) | |
| 763-1033, gnl|tetNig1|chr1_random (193070-192873) | |
| 763-1033, gnl|xenTro1|scaffold_795 (299882-299694) | |
| 1067-1384, gnl|bosTau2|chr29 (21735125-21735449) | |
| 1067-1384, gnl|Hg17|chr11 (125720735-125721126) | |
| 1067-1384, gnl|Mm7|chr9 (35019378-35018952) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 251-403, gnl|bosTau2|chr12 (27412569-27412714) | |
| 251-403, gnl|Hg17|chr5 (171810711-171810862) | |
| 536-654, gnl|bosTau2|chr29 (21728058-21728176) | |
| 536-654, gnl|canFam2|chr5 (11181905-11181770) | |
| 536-654, gnl|danRer3|chr10 (36888775-36888642) | |
| 536-654, gnl|echTel1|scaffold_314527 (5346-5482) | |
| 536-654, gnl|fr1|chrUn (240087160-240087043) | |
| 536-654, gnl|galGal2|chr24 (428185-428316) | |
| 536-654, gnl|hg17|chr11 (125713373-125713507) | |
| 536-654, gnl|Hg17|chr11 (125713386-125713504) | |
| 536-654, gnl|loxAfr1|scaffold_49960 (7340-7478) | |
| 536-654, gnl|mm7|chr9 (35024396-35024262) | |
| 536-654, gnl|Mm7|chr9 (35024381-35024263) | |
| 536-654, gnl|monDom2|scaffold_15 (13278113-13278246) | |
| 536-654, gnl|oryCun1|scaffold_175061 (45684-45817) | |
| 536-654, gnl|panTro1|chr9_random (7137547-7137413) | |
| 536-654, gnl|rheMac2|chr14 (124483736-124483870) | |
| 536-654, gnl|rn3|chr8 (34915959-34915825) | |
| 536-654, gnl|tetNig1|chr1_random (193919-193780) | |
| 763-1033, gnl|bosTau2|chr29 (21734850-21735120) | |
| 763-1033, gnl|canFam2|chr5 (11174283-11174075) | |
| 763-1033, gnl|danRer3|chr10 (36883613-36883425) | |
| 763-1033, gnl|dasNov1|scaffold_60174 (11945-11741) | |
| 763-1033, gnl|fr1|chrUn (240086444-240086247) | |
| 763-1033, gnl|galGal2|chr24 (434318-434515) | |
| 763-1033, gnl|hg17|chr11 (125720426-125720629) | |
| 763-1033, gnl|Hg17|chr11 (125720449-125720719) | |
| 763-1033, gnl|loxAfr1|scaffold_49960 (14172-14381) | |
| 763-1033, gnl|mm7|chr9 (35019679-35019471) | |
| 763-1033, gnl|Mm7|chr9 (35019649-35019383) | |
| 763-1033, gnl|monDom2|scaffold_15 (13286895-13287086) | |
| 763-1033, gnl|oryCun1|scaffold_201011 (79388-79597) | |
| 763-1033, gnl|panTro1|chr9 (127804623-127804826) | |
| 763-1033, gnl|rn3|chr8 (34911371-34911162) | |
| 763-1033, gnl|tetNig1|chr1_random (193070-192873) | |
| 763-1033, gnl|xenTro1|scaffold_795 (299882-299694) | |
| 1067-1384, gnl|bosTau2|chr29 (21735125-21735449) | |
| 1067-1384, gnl|Hg17|chr11 (125720735-125721126) | |
| 1067-1384, gnl|Mm7|chr9 (35019378-35018952) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| csp (0.322373) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |