Ss1.1-Thy1-THY010056H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTGCGCCTTCTTTCCTGCCCCAGGCGCATCACTTTCAGTCTCCATCCCAGCTGCCTTT GCGCGAGCAAAATGGCAGCCCCCGTAACACGGGGCTTGTCTTGCTTACCCAGGGTTTTAG GATGGTGGTCTCGGCAGCCAGTCTTGGTGACTCAGTCCACAGCAGTAGTTCCAGTGAGAA CTAAAAAACGTTTCACACCCCCTACCTATCAACCCAAGTACAAATCAGAGAAGGAGTTTG TAGAACATGCCCGGAAAGCAGGACTGGTCATACCTCATGAACGTTTGGAGCGCCCCATAC ATCTAGCCTGTACAGCTGGTATCTTTGATGCCTATGTTCCTCCTGAGGGTGATGCCCGGA TATCATCTCTTTCTAAGGAAGGACTGGCACAGAGAGCTGAGCGACTGAAGAAGAATGTGG CCTCACAATTGTCAATCCGCAAGATAAGAGAAAGTGATCCTAATTTTAAAATTAAGGACT TCCCTGAAAAAGCCAAGGATATCTTCATTGAAGCGCACCTGTGTCTAAACAACTCAGACC ATGACCGGCTTCATACCTTGGTAACCGAAAACTGCTTTCCGGATATGGTCTGGGACATCA GATACAAGACTGTCCGGTGGAGCTTCGTAGAATCTTTAGAGCCACCCCAGGTGGTGCAGG TTCGCTGTTCGAGTCTGATGAACCAGGGCAACATCTATGGCCAGGTCACCGTCCGCATGC ACACTCGGCAGACTCTGGCCATCTATGACCGGTTTGGCCGGTTGATGTATGGACAGGAAG ATGTGCCCAGGGATGTCCTGGAGTATGTTGTCTTTGAAAAGCACCTGGTGGACCCTTATG GGAGCTGGCGAATGCATGGCAAGATCATTCCCCCATGGGCACCCCCTAAGCAGCCCATCC TTAAGACGGTGATGATACCTGGCCCCCAGCTGAAACCCTGGGAAGAGTTTGAAGAGCCAC AAGGAGAGGTCCATAAGCCTCAGCCTGCGCGACGGCGAAATGACTCCTGAGGTGAAGCCT GGGTGATGAGATGGCTGGAAGCTGTGAAGTCTAAGAACCTGGGAGCTGTGAAGTCATCTG TCTTCTTCCTGCCGTAGAAAGAACTACCTTTGCTCTCTCTTGCTCTGCGTGGCTCTTCTG GGCAGTCTTGTTGTCAGTAACCACTGCTGATGGCTGGGCCCTGGTAGGTGGGTCCTGTGC ACAGCCATGGACCCTCTTCTTCTTTAAATCTTATATCCAGCTTCTGACTCTGGATGAGAA ACAATGTGGTTCAGAGAGCATCTGATTATCAGCTTTTCCCACAGCAAGAACTGTCAGGAG CAAACTGGCTAACTTTCATTTCTCATTACAGGGCAGGGATCAGAGTTTGAAATAAAACAC TGTCAGGTGTTGGACAAATTGTGATAAGTCCTGTGCATTTCTCCTAGTTCAGGCTGGAAG TAGACTAGCCTTCAAAATGGCAGAAATGGAAGTTATCTTAATTGTGAGTGATGAGACTTT TAGGAAATCCAGACTTGGGAAAAATTAGTGTTTATAAAAATGGTATCATTTAAGAGGGTC TTTTCTCATATACTGACTGAATCAGCATTTGTATTTCACAAATGAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTGCGCCTTCTTTCCTGCCCCAGGCGCATCACTTTCAGTCTCCATCCCAGCTGCCTTT GCGCGAGCAAAATGGCAGCCCCCGTAACACGGGGCTTGTCTTGCTTACCCAGGGTTTTAG GATGGTGGTCTCGGCAGCCAGTCTTGGTGACTCAGTCCACAGCAGTAGTTCCAGTGAGAA CTAAAAAACGTTTCACACCCCCTACCTATCAACCCAAGTACAAATCAGAGAAGGAGTTTG TAGAACATGCCCGGAAAGCAGGACTGGTCATACCTCATGAACGTTTGGAGCGCCCCATAC ATCTAGCCTGTACAGCTGGTATCTTTGATGCCTATGTTCCTCCTGAGGGTGATGCCCGGA TATCATCTCTTTCTAAGGAAGGACTGGCACAGAGAGCTGAGCGACTGAAGAAGAATGTGG CCTCACAATTGTCAATCCGCAAGATAAGAGAAAGTGATCCTAATTTTAAAATTAAGGACT TCCCTGAAAAAGCCAAGGATATCTTCATTGAAGCGCACCTGTGTCTAAACAACTCAGACC ATGACCGGCTTCATACCTTGGTAACCGAAAACTGCTTTCCGGATATGGTCTGGGACATCA GATACAAGACTGTCCGGTGGAGCTTCGTAGAATCTTTAGAGCCACCCCAGGTGGTGCAGG TTCGCTGTTCGAGTCTGATGAACCAGGGCAACATCTATGGCCAGGTCACCGTCCGCATGC ACACTCGGCAGACTCTGGCCATCTATGACCGGTTTGGCCGGTTGATGTATGGACAGGAAG ATGTGCCCAGGGATGTCCTGGAGTATGTTGTCTTTGAAAAGCACCTGGTGGACCCTTATG GGAGCTGGCGAATGCATGGCAAGATCATTCCCCCATGGGCACCCCCTAAGCAGCCCATCC TTAAGACGGTGATGATACCTGGCCCCCAGCTGAAACCCTGGGAAGAGTTTGAAGAGCCAC AAGGAGAGGTCCATAAGCCTCAGCCTGCGCGACGGCGAAATGACTCCTGAGGTGAAGCCT GGGTGATGAGATGGCTGGAAGCTGTGAAGTCTAAGAACCTGGGAGCTGTGAAGTCATCTG TCTTCTTCCTGCCGTAGAAAGAACTACCTTTGCTCTCTCTTGCTCTGCGTGGCTCTTCTG GGCAGTCTTGTTGTCAGTAACCACTGCTGATGGCTGGGCCCTGGTAGGTGGGTCCTGTGC ACAGCCATGGACCCTCTTCTTCTTTAAATCTTATATCCAGCTTCTGACTCTGGATGAGAA ACAATGTGGTTCAGAGAGCATCTGATTATCAGCTTTTCCCACAGCAAGAACTGTCAGGAG CAAACTGGCTAACTTTCATTTCTCATTACAGGGCAGGGATCAGAGTTTGAAATAAAACAC TGTCAGGTGTTGGACAAATTGTGATAAGTCCTGTGCATTTCTCCTAGTTCAGGCTGGAAG TAGACTAGCCTTCAAAATGGCAGAAATGGAAGTTATCTTAATTGTGAGTGATGAGACTTT TAGGAAATCCAGACTTGGGAAAAATTAGTGTTTATAAAAATGGTATCATTTAAGAGGGTC TTTTCTCATATACTGACTGAATCAGCATTTGTATTTCACAAATGAGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 135-315, gnl|bosTau2|chr19 (32773723-32773903) | |
| 135-315, gnl|canFam2|chr9 (27163302-27162937) | |
| 135-315, gnl|dasNov1|scaffold_12119 (9461-9849) | |
| 135-315, gnl|echTel1|scaffold_308269 (107451-107050) | |
| 135-315, gnl|hg17|chr17 (33707756-33708134) | |
| 135-315, gnl|Hg17|chr17 (42923560-42923380) | |
| 135-315, gnl|loxAfr1|scaffold_20516 (60579-60182) | |
| 135-315, gnl|mm7|chr11 (97425602-97425989) | |
| 135-315, gnl|Mm7|chr11 (97425783-97425963) | |
| 135-315, gnl|monDom2|scaffold_18 (47139396-47139776) | |
| 135-315, gnl|oryCun1|scaffold_203861 (62150-62526) | |
| 135-315, gnl|panTro1|chr19 (36897882-36898261) | |
| 135-315, gnl|rheMac2|chr16 (31680567-31680197) | |
| 135-315, gnl|rn3|chr10 (86061668-86062069) | |
| 572-731, gnl|bosTau2|chr19 (32790497-32790656) | |
| 572-731, gnl|canFam2|chr7 (8918430-8918588) | |
| 572-731, gnl|canFam2|chr9 (27156686-27156493) | |
| 572-731, gnl|danRer3|chr11 (13592593-13592760) | |
| 572-731, gnl|danRer3|chr11 (13592733-13592590) | |
| 572-731, gnl|dasNov1|scaffold_12119 (36009-36202) | |
| 572-731, gnl|dasNov1|scaffold_218361 (821-663) | |
| 572-731, gnl|echTel1|scaffold_225137 (10748-10904) | |
| 572-731, gnl|echTel1|scaffold_308269 (96918-96726) | |
| 572-731, gnl|fr1|chrUn (150333173-150333350) | |
| 572-731, gnl|fr1|chrUn (150333334-150333189) | |
| 572-731, gnl|galGal2|chrUn (137147496-137147692) | |
| 572-731, gnl|galGal2|chrUn (137147681-137147526) | |
| 572-731, gnl|hg17|chr17 (33729997-33730190) | |
| 572-731, gnl|Hg17|chr17 (33730019-33730178) | |
| 572-731, gnl|hg17|chr2 (88503733-88503890) | |
| 572-731, gnl|loxAfr1|scaffold_60164 (4621-4433) | |
| 572-731, gnl|loxAfr1|scaffold_60164 (4444-4593) | |
| 572-731, gnl|mm7|chr11 (97435791-97435976) | |
| 572-731, gnl|Mm7|chr11 (97435809-97435970) | |
| 572-731, gnl|mm7|chr16 (55944496-55944652) | |
| 572-731, gnl|monDom2|scaffold_18 (47144919-47145110) | |
| 572-731, gnl|monDom2|scaffold_18 (47145093-47144952) | |
| 572-731, gnl|oryCun1|scaffold_203861 (81922-82114) | |
| 572-731, gnl|oryCun1|scaffold_203861 (82104-81946) | |
| 572-731, gnl|panTro1|chr12_random (31204829-31204986) | |
| 572-731, gnl|panTro1|chr19 (36939153-36939346) | |
| 572-731, gnl|rheMac2|chr13 (88878568-88878726) | |
| 572-731, gnl|rheMac2|chr16 (31656601-31656441) | |
| 572-731, gnl|rn3|chr10 (86069492-86069677) | |
| 572-731, gnl|rn3|chr10 (86069672-86069524) | |
| 572-731, gnl|tetNig1|chr18 (10058761-10058946) | |
| 572-731, gnl|tetNig1|chr18 (10058922-10058779) | |
| 572-731, gnl|xenTro1|scaffold_334 (794233-794416) | |
| 572-731, gnl|xenTro1|scaffold_334 (794402-794247) | |
| 898-1608, gnl|bosTau2|chr19 (32791596-32792301) | |
| 898-1608, gnl|Hg17|chr17 (33731911-33732600) | |
| 898-1608, gnl|Mm7|chr11 (97437509-97438287) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-315, gnl|bosTau2|chr19 (32773723-32773903) | |
| 135-315, gnl|canFam2|chr9 (27163302-27162937) | |
| 135-315, gnl|dasNov1|scaffold_12119 (9461-9849) | |
| 135-315, gnl|echTel1|scaffold_308269 (107451-107050) | |
| 135-315, gnl|hg17|chr17 (33707756-33708134) | |
| 135-315, gnl|Hg17|chr17 (42923560-42923380) | |
| 135-315, gnl|loxAfr1|scaffold_20516 (60579-60182) | |
| 135-315, gnl|mm7|chr11 (97425602-97425989) | |
| 135-315, gnl|Mm7|chr11 (97425783-97425963) | |
| 135-315, gnl|monDom2|scaffold_18 (47139396-47139776) | |
| 135-315, gnl|oryCun1|scaffold_203861 (62150-62526) | |
| 135-315, gnl|panTro1|chr19 (36897882-36898261) | |
| 135-315, gnl|rheMac2|chr16 (31680567-31680197) | |
| 135-315, gnl|rn3|chr10 (86061668-86062069) | |
| 572-731, gnl|bosTau2|chr19 (32790497-32790656) | |
| 572-731, gnl|canFam2|chr7 (8918430-8918588) | |
| 572-731, gnl|canFam2|chr9 (27156686-27156493) | |
| 572-731, gnl|danRer3|chr11 (13592593-13592760) | |
| 572-731, gnl|danRer3|chr11 (13592733-13592590) | |
| 572-731, gnl|dasNov1|scaffold_12119 (36009-36202) | |
| 572-731, gnl|dasNov1|scaffold_218361 (821-663) | |
| 572-731, gnl|echTel1|scaffold_225137 (10748-10904) | |
| 572-731, gnl|echTel1|scaffold_308269 (96918-96726) | |
| 572-731, gnl|fr1|chrUn (150333173-150333350) | |
| 572-731, gnl|fr1|chrUn (150333334-150333189) | |
| 572-731, gnl|galGal2|chrUn (137147496-137147692) | |
| 572-731, gnl|galGal2|chrUn (137147681-137147526) | |
| 572-731, gnl|hg17|chr17 (33729997-33730190) | |
| 572-731, gnl|Hg17|chr17 (33730019-33730178) | |
| 572-731, gnl|hg17|chr2 (88503733-88503890) | |
| 572-731, gnl|loxAfr1|scaffold_60164 (4621-4433) | |
| 572-731, gnl|loxAfr1|scaffold_60164 (4444-4593) | |
| 572-731, gnl|mm7|chr11 (97435791-97435976) | |
| 572-731, gnl|Mm7|chr11 (97435809-97435970) | |
| 572-731, gnl|mm7|chr16 (55944496-55944652) | |
| 572-731, gnl|monDom2|scaffold_18 (47144919-47145110) | |
| 572-731, gnl|monDom2|scaffold_18 (47145093-47144952) | |
| 572-731, gnl|oryCun1|scaffold_203861 (81922-82114) | |
| 572-731, gnl|oryCun1|scaffold_203861 (82104-81946) | |
| 572-731, gnl|panTro1|chr12_random (31204829-31204986) | |
| 572-731, gnl|panTro1|chr19 (36939153-36939346) | |
| 572-731, gnl|rheMac2|chr13 (88878568-88878726) | |
| 572-731, gnl|rheMac2|chr16 (31656601-31656441) | |
| 572-731, gnl|rn3|chr10 (86069492-86069677) | |
| 572-731, gnl|rn3|chr10 (86069672-86069524) | |
| 572-731, gnl|tetNig1|chr18 (10058761-10058946) | |
| 572-731, gnl|tetNig1|chr18 (10058922-10058779) | |
| 572-731, gnl|xenTro1|scaffold_334 (794233-794416) | |
| 572-731, gnl|xenTro1|scaffold_334 (794402-794247) | |
| 898-1608, gnl|bosTau2|chr19 (32791596-32792301) | |
| 898-1608, gnl|Hg17|chr17 (33731911-33732600) | |
| 898-1608, gnl|Mm7|chr11 (97437509-97438287) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nms (0.641574) | |
| ece (0.45861) | |
| sme (0.305437) | |
| mas (0.210305) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.641574) | |
| ece (0.45861) | |
| sme (0.305437) | |
| mas (0.210305) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ecc (0.115035) |