Ss1.1-Thy1-THY010057A01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAACACGCTCAACAGCTCCCCGCCCTTGGCTCCGGGCGAGTTTGATCCAAACATTGAT GTTTATGGAATTAAATGCCATGAAAACTCGCCTAGGAAAGAGGTGTACTTTATGGCAATT ATTGACATTCTGACTCATTACGATGCAAAAAAGAAAGCTGCCCACGCTGCAAAAACTGTT AAACACGGTGCTGGCGCAGAGATCTCCACCGTGAACCCAGAACAGTATTCGAAGCGCTTT TTGGACTTTATTGGCCACATCTTGACGTAACATCCTGCACGGCCACAGACAGATGTGAGC ATGGGAAGGACAGAGGTGGCTTCAGCGCAGGAAAAATGAAAACCAAACTCAGTGAAGCAC ACCTCCTCGTTTACACCTTCAGGCCAAGACGACTGATTTGGGGGCTACTCGCTTTAACAG CTACCTGATATTTCCCAGCATCATTCTAGCTATTTCTGACGTGTGCGCGCGCGTTTGTGT GTGTGTGTGTGTGTGCGTGTGTGCATCTTAAACATTGATCAGTGAAAATGTGTTGGGGGC AACAACCCTCTGACTGCAGCTGTCGACGAATGAGTGAGTGAGTGAGTGAGCACCTGCAGG GGGCGGGGAGAAGGCTGCGCATGTCAGACCGACCAGGTCGGCACCACACGAGAAACTGTG GATCAGTTTATTTTTTGGAGTTGAAAGATGTGAGACAGTATTCGTAATAATAATGAAGAT AATAATAATGAAGATAATAATAATGATGGTGATTAAAAGAGGGGAAAAAACTTACCGCAA ATGTCACACTCTACTACGCACGCTGACACTCCTTCTTAACAGTCATACCCCGGCCCCGGG CGGAGGAGGCTGGCATCCCCCGTGCGTCCTGGTTCAGGTGTCGGCATTCCCAGTGTCCAG GGACACACACCCCTCCTTCGGCAGGAAGCTGATGCCCCTGGTGACTCTCTCTGTACATTT TCACCTCAGTAAATATGTCCAGGAAAACTGCTTCTCTTTTCTTGCCTGGAGCTTCTTCAC TGATACACTCTTATGTTGCAATATAGGAATTAATGCTACAAAATAAAATAAAGCTTTCCT TAAAAGTGCATCGTTTTGGGCAATGGTATCTGCATCTCCCAGAGTGGGAAGGCAAGCAAA GCATTTAGAACTCTCAATTCTCCTGTTAAACCATAGTATTTTGTTATGAATTATCCCTTT AATTGAAACCCTCAATATTACTGTTTACATTATTAGGAAAACAGGGATTTTTTGAATCTA AAAATTTAATGTACAGCATGTGATTTTTGAAGTTTACATGTAAAGTCACTTGACAGTGTA GGTGAAATGTTTGTCCTATTTTGAAATGTATCCTGCAGTCACATTTTGGGGTGAATGTTT TATTCAAAGTACCTGGTAGGCAGTCTTTTACAGGAAAAGGAAAAGGTTTGATTTGTTTCC TCCAGATATACATTTATTAACCTAATGATTTTTTTTTAAGAAAATGTTTAACCCAGATCT GGTTATGTATGTTCATTGCCCTAAACTGTGCTGTGTCTAATCAAGTTATAAATTTCCAAC ACTGATCATGTATTTACCAACTTCCCGGCATTTTCTGAAAGGCGTCAAGTGAATACTAGA TTTGCTTAGAATAGGTTATCAATTTATACACTGTGCTAAAGCTGTGCCTTTGAAATTCTC TGTTTAAAACGTGAGATGATTTTTGTAGGCAGGTTCAGAAAAGAAAAAAAAAAAAAATCC CACTCTTCAATAATTACTTACAACTCAGCAAATACCCCCTGCCATACTGCCTCTTCCAGT GACTTGACTTCAGGGCTTACCAGATCTGTGACTGCACCCCGTGTATGTGGGTTGACTCTC GAACACACAAGGTGACAGCAAGTTGGAATCCTGGGAAGCCAGCAGCAAGGCCATTCTGCT CATCTGCGGACTTCTCATAGTTGTTATCCTCAACAGATGATGTCAACGGCACTGTGACCT GTTGTCCAAATCTGTTTTTTGTGTGTTTAAATGAATGGAGATGGTGATTTAATACCCCCG CCCGTAATTCATTCTGGCATCAAGTCCCTCTCAGTGTTCTGAAGTTCTGCTGTGGTTTCT TTGATCCACGATTACAGAAGTGAGACCCTGAAGTAAAGAGAAGGTACCCGTACATTATTT GAGTAACTGTTTCCTTTGTGGCCAAACTGTGTATGCTTTTAGAAGTTTACAAAATGCTTT ATTTTTGTCTGTAACAGTCTCTGTCTTCCATTTCTGTTGGTCAACTCCTGGGACAGAGTG AGGACGTTTGCCTTGTATTTCCTAGTGCTAACAGTACACTCCAGTCATGAGCCAGGCTTT ACGAAATAAAGCACTTTGATGACTCACAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAACACGCTCAACAGCTCCCCGCCCTTGGCTCCGGGCGAGTTTGATCCAAACATTGAT GTTTATGGAATTAAATGCCATGAAAACTCGCCTAGGAAAGAGGTGTACTTTATGGCAATT ATTGACATTCTGACTCATTACGATGCAAAAAAGAAAGCTGCCCACGCTGCAAAAACTGTT AAACACGGTGCTGGCGCAGAGATCTCCACCGTGAACCCAGAACAGTATTCGAAGCGCTTT TTGGACTTTATTGGCCACATCTTGACGTAACATCCTGCACGGCCACAGACAGATGTGAGC ATGGGAAGGACAGAGGTGGCTTCAGCGCAGGAAAAATGAAAACCAAACTCAGTGAAGCAC ACCTCCTCGTTTACACCTTCAGGCCAAGACGACTGATTTGGGGGCTACTCGCTTTAACAG CTACCTGATATTTCCCAGCATCATTCTAGCTATTTCTGACGTGTGCGCGCGCGTTTGTGT GTGTGTGTGTGTGTGCGTGTGTGCATCTTAAACATTGATCAGTGAAAATGTGTTGGGGGC AACAACCCTCTGACTGCAGCTGTCGACGAATGAGTGAGTGAGTGAGTGAGCACCTGCAGG GGGCGGGGAGAAGGCTGCGCATGTCAGACCGACCAGGTCGGCACCACACGAGAAACTGTG GATCAGTTTATTTTTTGGAGTTGAAAGATGTGAGACAGTATTCGTAATAATAATGAAGAT AATAATAATGAAGATAATAATAATGATGGTGATTAAAAGAGGGGAAAAAACTTACCGCAA ATGTCACACTCTACTACGCACGCTGACACTCCTTCTTAACAGTCATACCCCGGCCCCGGG CGGAGGAGGCTGGCATCCCCCGTGCGTCCTGGTTCAGGTGTCGGCATTCCCAGTGTCCAG GGACACACACCCCTCCTTCGGCAGGAAGCTGATGCCCCTGGTGACTCTCTCTGTACATTT TCACCTCAGTAAATATGTCCAGGAAAACTGCTTCTCTTTTCTTGCCTGGAGCTTCTTCAC TGATACACTCTTATGTTGCAATATAGGAATTAATGCTACAAAATAAAATAAAGCTTTCCT TAAAAGTGCATCGTTTTGGGCAATGGTATCTGCATCTCCCAGAGTGGGAAGGCAAGCAAA GCATTTAGAACTCTCAATTCTCCTGTTAAACCATAGTATTTTGTTATGAATTATCCCTTT AATTGAAACCCTCAATATTACTGTTTACATTATTAGGAAAACAGGGATTTTTTGAATCTA AAAATTTAATGTACAGCATGTGATTTTTGAAGTTTACATGTAAAGTCACTTGACAGTGTA GGTGAAATGTTTGTCCTATTTTGAAATGTATCCTGCAGTCACATTTTGGGGTGAATGTTT TATTCAAAGTACCTGGTAGGCAGTCTTTTACAGGAAAAGGAAAAGGTTTGATTTGTTTCC TCCAGATATACATTTATTAACCTAATGATTTTTTTTTAAGAAAATGTTTAACCCAGATCT GGTTATGTATGTTCATTGCCCTAAACTGTGCTGTGTCTAATCAAGTTATAAATTTCCAAC ACTGATCATGTATTTACCAACTTCCCGGCATTTTCTGAAAGGCGTCAAGTGAATACTAGA TTTGCTTAGAATAGGTTATCAATTTATACACTGTGCTAAAGCTGTGCCTTTGAAATTCTC TGTTTAAAACGTGAGATGATTTTTGTAGGCAGGTTCAGAAAAGAAAAAAAAAAAAAATCC CACTCTTCAATAATTACTTACAACTCAGCAAATACCCCCTGCCATACTGCCTCTTCCAGT GACTTGACTTCAGGGCTTACCAGATCTGTGACTGCACCCCGTGTATGTGGGTTGACTCTC GAACACACAAGGTGACAGCAAGTTGGAATCCTGGGAAGCCAGCAGCAAGGCCATTCTGCT CATCTGCGGACTTCTCATAGTTGTTATCCTCAACAGATGATGTCAACGGCACTGTGACCT GTTGTCCAAATCTGTTTTTTGTGTGTTTAAATGAATGGAGATGGTGATTTAATACCCCCG CCCGTAATTCATTCTGGCATCAAGTCCCTCTCAGTGTTCTGAAGTTCTGCTGTGGTTTCT TTGATCCACGATTACAGAAGTGAGACCCTGAAGTAAAGAGAAGGTACCCGTACATTATTT GAGTAACTGTTTCCTTTGTGGCCAAACTGTGTATGCTTTTAGAAGTTTACAAAATGCTTT ATTTTTGTCTGTAACAGTCTCTGTCTTCCATTTCTGTTGGTCAACTCCTGGGACAGAGTG AGGACGTTTGCCTTGTATTTCCTAGTGCTAACAGTACACTCCAGTCATGAGCCAGGCTTT ACGAAATAAAGCACTTTGATGACTCACAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 81-188, gnl|bosTau2|chr13 (15424089-15423982) | |
| 81-188, gnl|canFam2|chr2 (13526871-13526741) | |
| 81-188, gnl|danRer3|chr2 (12401531-12401410) | |
| 81-188, gnl|dasNov1|scaffold_30728 (1054-933) | |
| 81-188, gnl|echTel1|scaffold_52225 (991-862) | |
| 81-188, gnl|fr1|chrUn (48765844-48765972) | |
| 81-188, gnl|galGal2|chr2 (16961234-16961116) | |
| 81-188, gnl|hg17|chr10 (22868900-22869030) | |
| 81-188, gnl|Hg17|chr10 (22869014-22868907) | |
| 81-188, gnl|loxAfr1|scaffold_1352 (80655-80525) | |
| 81-188, gnl|mm7|chr2 (18911028-18911158) | |
| 81-188, gnl|Mm7|chr2 (18911142-18911035) | |
| 81-188, gnl|monDom2|scaffold_7 (46304391-46304261) | |
| 81-188, gnl|oryCun1|scaffold_214969 (177582-177452) | |
| 81-188, gnl|panTro1|chr8 (23069001-23069131) | |
| 81-188, gnl|rheMac2|chr9 (22738456-22738586) | |
| 81-188, gnl|rn3|chr17 (92965198-92965328) | |
| 81-188, gnl|tetNig1|chr18 (1014928-1014801) | |
| 81-188, gnl|xenTro1|scaffold_42 (2500978-2500849) | |
| 190-2369, gnl|bosTau2|chr13 (15421546-15419340) | |
| 190-2369, gnl|Hg17|chr10 (22866216-22863904) | |
| 190-2369, gnl|Mm7|chr2 (18909619-18907422) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-188, gnl|bosTau2|chr13 (15424089-15423982) | |
| 81-188, gnl|canFam2|chr2 (13526871-13526741) | |
| 81-188, gnl|danRer3|chr2 (12401531-12401410) | |
| 81-188, gnl|dasNov1|scaffold_30728 (1054-933) | |
| 81-188, gnl|echTel1|scaffold_52225 (991-862) | |
| 81-188, gnl|fr1|chrUn (48765844-48765972) | |
| 81-188, gnl|galGal2|chr2 (16961234-16961116) | |
| 81-188, gnl|hg17|chr10 (22868900-22869030) | |
| 81-188, gnl|Hg17|chr10 (22869014-22868907) | |
| 81-188, gnl|loxAfr1|scaffold_1352 (80655-80525) | |
| 81-188, gnl|mm7|chr2 (18911028-18911158) | |
| 81-188, gnl|Mm7|chr2 (18911142-18911035) | |
| 81-188, gnl|monDom2|scaffold_7 (46304391-46304261) | |
| 81-188, gnl|oryCun1|scaffold_214969 (177582-177452) | |
| 81-188, gnl|panTro1|chr8 (23069001-23069131) | |
| 81-188, gnl|rheMac2|chr9 (22738456-22738586) | |
| 81-188, gnl|rn3|chr17 (92965198-92965328) | |
| 81-188, gnl|tetNig1|chr18 (1014928-1014801) | |
| 81-188, gnl|xenTro1|scaffold_42 (2500978-2500849) | |
| 190-2369, gnl|bosTau2|chr13 (15421546-15419340) | |
| 190-2369, gnl|Hg17|chr10 (22866216-22863904) | |
| 190-2369, gnl|Mm7|chr2 (18909619-18907422) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cbl (1.03318) | |
| spl (0.429553) | |
| ebs (0.354904) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| spc (0.226732) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.03318) | |
| spl (0.429553) | |
| ebs (0.354904) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| spc (0.226732) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |