Non-Coding RNA Search

Ss1.1-Thy1-THY010057B01.5

Sequence:


               
               AGAAGAAGACAGACAGGCCAACAGGTTCAGATAGCCTGCTCGCCGCTCCACGCCCCCCAC
TGCTCTCCTGCCCCAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCG
AAGACCACCTCCTGCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCG
TCTGCGGTTTCCTGAAGGAGAGGTACTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCA
AAGTTGTGAAGGGTGGCTCCTCAGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTG
ACCTCGTCGTCTTCCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAG
AATTCATCCAGGAAATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAG
TGACGTTTGAGGTCCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCA
GCTCCCCCCAGCTCCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGG
GTCAGTGGACCCCGGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGT
GCAAGTCCCTAGGGAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACT
TCCTGAGGAACCGACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACC
AGACGTGTAAGAAGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCTGGAGCTCCTGA
CAGTCTATGCATGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTC
AGACTGTTTTGGAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATT
ATAACTTTAAAAACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGC
CTGTGATTCTGGACCCGGCTGACCCTACAGGCAACGTTGGTGGTGGAGACACATACAGCT
GGCAGCAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAGACAGACAGGCCAACAGGTTCAGATAGCCTGCTCGCCGCTCCACGCCCCCCAC
TGCTCTCCTGCCCCAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCG
AAGACCACCTCCTGCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCG
TCTGCGGTTTCCTGAAGGAGAGGTACTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCA
AAGTTGTGAAGGGTGGCTCCTCAGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTG
ACCTCGTCGTCTTCCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAG
AATTCATCCAGGAAATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAG
TGACGTTTGAGGTCCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCA
GCTCCCCCCAGCTCCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGG
GTCAGTGGACCCCGGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGT
GCAAGTCCCTAGGGAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACT
TCCTGAGGAACCGACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACC
AGACGTGTAAGAAGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCTGGAGCTCCTGA
CAGTCTATGCATGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTC
AGACTGTTTTGGAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATT
ATAACTTTAAAAACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGC
CTGTGATTCTGGACCCGGCTGACCCTACAGGCAACGTTGGTGGTGGAGACACATACAGCT
GGCAGCAGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47524464|gb|AAT34965.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47524464|gb|AAT34965.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               250-546, gnl|bosTau2|chr17 (37659338-37659634)
               

               
               250-546, gnl|Hg17|chr12 (111809059-111809355)
               

               
               250-546, gnl|Mm7|chr5 (120120049-120119754)
               


               
               725-959, gnl|bosTau2|chr17 (37663967-37664201)
               

               
               725-959, gnl|Hg17|chr12 (111817033-111817264)
               

               
               725-959, gnl|Mm7|chr5 (120113319-120113085)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               250-546, gnl|bosTau2|chr17 (37659338-37659634)
               

               
               250-546, gnl|Hg17|chr12 (111809059-111809355)
               

               
               250-546, gnl|Mm7|chr5 (120120049-120119754)
               


               
               725-959, gnl|bosTau2|chr17 (37663967-37664201)
               

               
               725-959, gnl|Hg17|chr12 (111817033-111817264)
               

               
               725-959, gnl|Mm7|chr5 (120113319-120113085)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	250-546, gnl\|bosTau2\|chr17 (37659338-37659634)
	250-546, gnl\|Hg17\|chr12 (111809059-111809355)
	250-546, gnl\|Mm7\|chr5 (120120049-120119754)

	725-959, gnl\|bosTau2\|chr17 (37663967-37664201)
	725-959, gnl\|Hg17\|chr12 (111817033-111817264)
	725-959, gnl\|Mm7\|chr5 (120113319-120113085)