Ss1.1-Thy1-THY010057B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCCTGTCCCTCAAGTATGAGAACGACTACCCCCCGGTCATCCTCCGGGACCCTCTGC AGACGGACCCCTTGCAGACCGACTACTTTGCCATCAAACAAGAAGTTGTGACCCCCGACA ACATGTGCATGGGGAGGACCAGTCGTGGGAAGCTCGGGGGCCAGGACTCCTTTGAGAGCA TAGAGAGCTACGACAGCTGTGACCGCCTCACCCAGTCCTGGAGCAGCCAGTCGTCCTTCA ACAGCCTGCAGCGCGTCCCCTCCTACGACAGCTTCGACTCGGAGGACTACCCAGCCGCCC TGCCCAACCACAAGCCCAAGGGCACCTTCAAGGACTATGTGCGTGACCGCGCTGACCTCA ACAAGGACAAGCCTGTCATCCCTGCCGCAGCCCTGGCTGGCTACACAGGCAGCGGACCGA TCCAGCTGTGGCAGTTTCTTCTGGAATTACTCACTGATAAATCCTGTCAGTCTTTTATCA GCTGGACAGGAGATGGCTGGGAATTCAAGCTTTCTGACCCAGATGAGGTGGCCAGGAGAT GGGGAAAAAGGAAAAACAAACCTAAGATGAATTATGAGAAACTGAGCCGTGGCCTTCGCT ATTATTATGACAAAAACATCATCCACAAGACGGCGGGTAAACGCTACGTGTACCGCTTTG TGTGCGACCTGCAGAGCCTCCTGGGCTACACGCCCGAGGAGCTCCATGCCATGCTGGACG TCAAGCCCGATGCCGATGAGTGATGGACACCCTGGGGCTGGGCAAACTCTCCTGAGGCAT TTTAAAGAACAACCACGTCGGTCGGACTCTTAATTTTTAATTGTTATTCTATTTTTAATT TTCCAGAGCTCGTTTTTTTTACATTCAGGGGTGGGAGCTAAGTGAGCTGCAGCTATAATC AATTGTGCGCTGTCGGAAGAGGAGGGCCAGGACTCGTGGGGCGGGCGGGACAAGAAATTC TTGAGCAAGAAGGGCCTTCTTAGAAGCTTGAAGAATCTGGCTTAAGGGAGGAAGAGACAA ATGTGTCCCATCATTTAAAAAAAAAAATATTCCATGAAAAAAGAAAAGTGTTTTGAGTCA TGGACCTATTAGCAAAAGAAATCGATGCACCAGGGGCTAGGAGACTAATAAAAGGCAATT CGTTTGCTTTTGTTTTCAGGTCTGGGAGGGCAAAAAAGTGGGAGGTGGGATCAAATCTTT TGTTTGGGGGATGCACTAAAAACCAAGGACTATTTACCTTTTATTCTCTTTCGAAACAAA GATGGACTTCCATGTAGTGGGGCCAAAACTGTTTTCGTGTTAAAATTTATTCAATTAAAT TTTGTGCCAGTATTTTTTTTTTTTCCTTAAAAATCGTCTTAAGCTCTAAGGTGGTCTCAG TGTTGCGGTATATCATGCAAGTTTGTTTTTATTTGCCGGTTGAGGATTCTGTCACCGTGA AAGGAAACTGTTTATATAGACCCCACTGGAAAGGCAAAGTGCTGTCACTGAGATGGGGGA CCCCAAATTCGTGTGACTGATATATGAAGGAAAAATAATGCTGATTTGGGTGCAAGGAAA CTGTGCATGGGAATTTCACCTATAATTTTAAACAATTATGATCACACCCCTCTACTTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCCTGTCCCTCAAGTATGAGAACGACTACCCCCCGGTCATCCTCCGGGACCCTCTGC AGACGGACCCCTTGCAGACCGACTACTTTGCCATCAAACAAGAAGTTGTGACCCCCGACA ACATGTGCATGGGGAGGACCAGTCGTGGGAAGCTCGGGGGCCAGGACTCCTTTGAGAGCA TAGAGAGCTACGACAGCTGTGACCGCCTCACCCAGTCCTGGAGCAGCCAGTCGTCCTTCA ACAGCCTGCAGCGCGTCCCCTCCTACGACAGCTTCGACTCGGAGGACTACCCAGCCGCCC TGCCCAACCACAAGCCCAAGGGCACCTTCAAGGACTATGTGCGTGACCGCGCTGACCTCA ACAAGGACAAGCCTGTCATCCCTGCCGCAGCCCTGGCTGGCTACACAGGCAGCGGACCGA TCCAGCTGTGGCAGTTTCTTCTGGAATTACTCACTGATAAATCCTGTCAGTCTTTTATCA GCTGGACAGGAGATGGCTGGGAATTCAAGCTTTCTGACCCAGATGAGGTGGCCAGGAGAT GGGGAAAAAGGAAAAACAAACCTAAGATGAATTATGAGAAACTGAGCCGTGGCCTTCGCT ATTATTATGACAAAAACATCATCCACAAGACGGCGGGTAAACGCTACGTGTACCGCTTTG TGTGCGACCTGCAGAGCCTCCTGGGCTACACGCCCGAGGAGCTCCATGCCATGCTGGACG TCAAGCCCGATGCCGATGAGTGATGGACACCCTGGGGCTGGGCAAACTCTCCTGAGGCAT TTTAAAGAACAACCACGTCGGTCGGACTCTTAATTTTTAATTGTTATTCTATTTTTAATT TTCCAGAGCTCGTTTTTTTTACATTCAGGGGTGGGAGCTAAGTGAGCTGCAGCTATAATC AATTGTGCGCTGTCGGAAGAGGAGGGCCAGGACTCGTGGGGCGGGCGGGACAAGAAATTC TTGAGCAAGAAGGGCCTTCTTAGAAGCTTGAAGAATCTGGCTTAAGGGAGGAAGAGACAA ATGTGTCCCATCATTTAAAAAAAAAAATATTCCATGAAAAAAGAAAAGTGTTTTGAGTCA TGGACCTATTAGCAAAAGAAATCGATGCACCAGGGGCTAGGAGACTAATAAAAGGCAATT CGTTTGCTTTTGTTTTCAGGTCTGGGAGGGCAAAAAAGTGGGAGGTGGGATCAAATCTTT TGTTTGGGGGATGCACTAAAAACCAAGGACTATTTACCTTTTATTCTCTTTCGAAACAAA GATGGACTTCCATGTAGTGGGGCCAAAACTGTTTTCGTGTTAAAATTTATTCAATTAAAT TTTGTGCCAGTATTTTTTTTTTTTCCTTAAAAATCGTCTTAAGCTCTAAGGTGGTCTCAG TGTTGCGGTATATCATGCAAGTTTGTTTTTATTTGCCGGTTGAGGATTCTGTCACCGTGA AAGGAAACTGTTTATATAGACCCCACTGGAAAGGCAAAGTGCTGTCACTGAGATGGGGGA CCCCAAATTCGTGTGACTGATATATGAAGGAAAAATAATGCTGATTTGGGTGCAAGGAAA CTGTGCATGGGAATTTCACCTATAATTTTAAACAATTATGATCACACCCCTCTACTTACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 147-409, gnl|bosTau2|chr1 (97652436-97652701) | |
| 147-409, gnl|Hg17|chr21 (39113296-39113561) | |
| 147-409, gnl|Mm7|chr16 (96022621-96022886) | |
| 526-762, gnl|bosTau2|chr1 (97655404-97655637) | |
| 526-762, gnl|canFam2|chr31 (35979232-35979449) | |
| 526-762, gnl|danRer3|chr16 (14141727-14141509) | |
| 526-762, gnl|dasNov1|scaffold_6678 (92154-92379) | |
| 526-762, gnl|echTel1|scaffold_302972 (107985-108211) | |
| 526-762, gnl|fr1|chrUn (10171012-10170786) | |
| 526-762, gnl|galGal2|chr1 (101521935-101522156) | |
| 526-762, gnl|hg17|chr21 (39116467-39116693) | |
| 526-762, gnl|Hg17|chr21 (39116466-39116721) | |
| 526-762, gnl|loxAfr1|scaffold_4089 (48174-48402) | |
| 526-762, gnl|mm7|chr16 (96025510-96025736) | |
| 526-762, gnl|Mm7|chr16 (96025509-96025764) | |
| 526-762, gnl|monDom2|scaffold_29 (3849033-3848816) | |
| 526-762, gnl|oryCun1|scaffold_204138 (25957-25740) | |
| 526-762, gnl|panTro1|chr22 (39153753-39153979) | |
| 526-762, gnl|rheMac2|chr3 (7815151-7814925) | |
| 526-762, gnl|rn3|chr11 (36084555-36084781) | |
| 526-762, gnl|tetNig1|chrUn_random (14193439-14193222) | |
| 526-762, gnl|xenTro1|scaffold_440 (299278-299503) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-409, gnl|bosTau2|chr1 (97652436-97652701) | |
| 147-409, gnl|Hg17|chr21 (39113296-39113561) | |
| 147-409, gnl|Mm7|chr16 (96022621-96022886) | |
| 526-762, gnl|bosTau2|chr1 (97655404-97655637) | |
| 526-762, gnl|canFam2|chr31 (35979232-35979449) | |
| 526-762, gnl|danRer3|chr16 (14141727-14141509) | |
| 526-762, gnl|dasNov1|scaffold_6678 (92154-92379) | |
| 526-762, gnl|echTel1|scaffold_302972 (107985-108211) | |
| 526-762, gnl|fr1|chrUn (10171012-10170786) | |
| 526-762, gnl|galGal2|chr1 (101521935-101522156) | |
| 526-762, gnl|hg17|chr21 (39116467-39116693) | |
| 526-762, gnl|Hg17|chr21 (39116466-39116721) | |
| 526-762, gnl|loxAfr1|scaffold_4089 (48174-48402) | |
| 526-762, gnl|mm7|chr16 (96025510-96025736) | |
| 526-762, gnl|Mm7|chr16 (96025509-96025764) | |
| 526-762, gnl|monDom2|scaffold_29 (3849033-3848816) | |
| 526-762, gnl|oryCun1|scaffold_204138 (25957-25740) | |
| 526-762, gnl|panTro1|chr22 (39153753-39153979) | |
| 526-762, gnl|rheMac2|chr3 (7815151-7814925) | |
| 526-762, gnl|rn3|chr11 (36084555-36084781) | |
| 526-762, gnl|tetNig1|chrUn_random (14193439-14193222) | |
| 526-762, gnl|xenTro1|scaffold_440 (299278-299503) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fty (0.351679) | |
| cty (0.20816) | |
| ill (0.175593) | |
| eli (0.151814) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| thg (0.126791) | |
| tra (0.123092) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| cty (0.20816) | |
| ill (0.175593) | |
| eli (0.151814) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| thg (0.126791) | |
| tra (0.123092) | |
| med (0.116252) | |
| cbl (0.114797) |